Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq150013 125 8e-23 seq3048439 123 3e-22 seq338454 122 1e-21 seq223494 122 1e-21 seq2836314 120 4e-21 seq2915918 111 2e-18 seq2880996 109 6e-18 seq2818177 109 6e-18 seq3087548 105 8e-17 seq2833774 105 8e-17 seq91939 104 3e-16 seq122565 102 1e-15 seq184539 100 3e-15 seq2879109 89.7 6e-12 seq2098547 86.0 7e-11 seq247149 86.0 7e-11 >seq150013 Length=32666 Score = 125 bits (138), Expect = 8e-23 Identities = 147/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 |||||| ||||| ||| | ||||||||| || ||||| | ||| || | ||| | Sbjct 24360 TGGCCAACTCGCCAGGCAACAGCAGGCGCACAGCCGTCTGCACCTCCCGGGACGTGATGG 24419 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 || |||||||| ||||||||| |||| ||||||| | ||||||| |||| |||| Sbjct 24420 TGGAACGCTTGTTGTAGTGCGCCAAACGGGAGGCCTCGCTAGCGATGCGCTCGAAGATGT 24479 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 |||| || ||||||||||||| ||| | |||| ||||| || ||| ||||||| Sbjct 24480 CGTTCACGAACGAGTTCATGATGCCCATAGCCTTGGAAGAGATACCGGTGTCCGGGTGCA 24539 Query 1254526 CCTGCTTGAGCACCTTGTA 1254544 | ||||| | |||||| || Sbjct 24540 CTTGCTTCAACACCTTATA 24558 >seq3048439 Length=1121 Score = 123 bits (136), Expect = 3e-22 Identities = 203/287 (71%), Gaps = 8/287 (3%) Strand=Plus/Plus Query 92649 AACATGTCGACGATGCGCGGGATCTTGCTCAGGCCGATGATCCTGCCCGTGGGCAGGTAG 92708 ||||||||||||||||||| | || |||||| | | | |||| || || | ||| Sbjct 32 AACATGTCGACGATGCGCGCCAGTTTCGACAGGCCCAGCACCTTGCCGGTCGGAATATAG 91 Query 92709 CCCACGTGGGCCTTGCCCATAAAGGGCAGCAGATGGTGCTCGCACATGGAGAAAAAGTCG 92768 |||||||||||||||| |||||||||||||| ||||||||||||| ||| | || ||| Sbjct 92 GCCACGTGGGCCTTGCCGATAAAGGGCAGCAGGTGGTGCTCGCACAGCGAGTACAACTCG 151 Query 92769 ACGTCGCGCACGATCACCATCTCGCCCGAGGCCTCGGCAAAGA--GCG-CGTCGCCGATG 92825 | ||| | ||||||||||||| | | | ||| || | ||| ||| | |||| Sbjct 152 ATGTCCTTTAGGATCACCATCTCGTCATTGTCAGAGGCGAACAATGCGCCGTTGACGATT 211 Query 92826 GCCTCGGCCAGCGTCATGC-GGTGGCCGCGCGTGCGCTCCACCATGGCCTTGGCCACGCG 92884 ||| ||| || ||| || ||| | | | | ||| |||||||| |||| Sbjct 212 TCCT---GCAG-GTTCTGCTCGTAGCCATGACACAGATACTGCATCGCCTTGGCGGCGCG 267 Query 92885 CATCGGCGTGTCCAGGAGGCCCTCGCGCCGCACGTCCTCGCCCAGGC 92931 | | ||||| || || ||||| ||||||| ||| || ||||||| Sbjct 268 CTTGGGCGTATCGAGCAGGCCTTCGCGCCCAGGGTCTTCACCCAGGC 314 >seq338454 Length=2200 Score = 122 bits (134), Expect = 1e-21 Identities = 148/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||| ||||| | | || Sbjct 1316 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGAATCTCCCTGGATGTGA 1375 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||| ||||| | |||||||| || |||||| | || || |||| | Sbjct 1376 TGGTCGAGCGTTTGTTGTAATGCGCCAGGCGCGACGCCTCGCCCGCTATACGCTCGAAAA 1435 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| |||||||||||||||| ||| | |||| |||||||| ||| |||| Sbjct 1436 TGTCGTTCACAAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCTGTGTCCGGGT 1495 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||||||||| Sbjct 1496 GGACCTGCTTCAGCACCTTGTA 1517 >seq223494 Length=5345 Score = 122 bits (134), Expect = 1e-21 Identities = 148/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| | | || Sbjct 2308 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCTGGATGTGA 2367 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| || |||||| |||| || || | | Sbjct 2368 TGGTAGAGCGCTTGTTGTAATGCGCCAGGCGCGACGCCTCGCCCGCGATACGCTCAAAGA 2427 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||| | ||| | |||| |||||||| ||| |||| Sbjct 2428 TGTCGTTGACGAAGGAGTTCATAATGCCCATGGCCTTGGACGAGATGCCGGTGTCCGGGT 2487 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||||||||| Sbjct 2488 GGACCTGCTTCAGCACCTTGTA 2509 >seq2836314 Length=258 Score = 120 bits (132), Expect = 4e-21 Identities = 119/154 (77%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 92601 TCGGCGATCTGGCGCGTGAGGGCCTCCTGCACCTGGAAGCGGTCGGAAAACATGTCGACG 92660 ||||||||||| ||||||||| ||||| | ||| | ||| | |||||||||| Sbjct 167 TCGGCGATCTGCCGCGTGAGGTTTTCCTGGATCTGCAGGCGCCGCGCGTACATGTCGACA 108 Query 92661 ATGCGCGGGATCTTGCTCAGGCCGATGATCCTGCCCGTGGGCAGGTAGCCCACGTGGGCC 92720 ||||||| | ||| |||||| | | | |||| || || | ||| ||||||||||| Sbjct 107 ATGCGCGCCAGCTTCGACAGGCCCAGCACCTTGCCGGTCGGTATATAGGCCACGTGGGCC 48 Query 92721 TTGCCCATAAAGGGCAGCAGATGGTGCTCGCACA 92754 ||||| |||||||||||||| ||||||||||||| Sbjct 47 TTGCCGATAAAGGGCAGCAGGTGGTGCTCGCACA 14 >seq2915918 Length=360 Score = 111 bits (122), Expect = 2e-18 Identities = 196/283 (69%), Gaps = 2/283 (1%) Strand=Plus/Minus Query 92650 ACATGTCGACGATGCGCGGGATCTTGCTCAGGCCGATGATCCTGCCCGTGGGCAGGTAGC 92709 |||||||||| ||||||| | ||| ||| |||| | | |||| || || | ||| Sbjct 356 ACATGTCGACAATGCGCGCCAGCTTCGACAGCCCGAGCACCTTGCCGGTCGGAATATAGG 297 Query 92710 CCACGTGGGCCTTGCCCATAAAGGGCAGCAGATGGTGCTCGCACATGGAGAAAAAGTCGA 92769 |||| ||||||||||| ||||||||||||| |||||||||||||| || | | |||| Sbjct 296 CCACATGGGCCTTGCCGATAAAGGGCAGCAAATGGTGCTCGCACAGCGAATACAGCTCGA 237 Query 92770 CGTCGCGCACGATCACCATCTCGCCCGAGGCCTCGGCAAAGAGCGCGTCGCCGATGGCCT 92829 ||| | |||||||||||| | | | || || ||||| || || | | Sbjct 236 TGTCCTTAAGAATCACCATCTCGTCATTGTCGGACGCGAACAGCGCACCGTTGACGATTT 177 Query 92830 CGGCCAGCGTCATGC-GGTGGCCGCGCGTGCGCTCCACCATGGCCTTGGCCACGCGCATC 92888 || |||| || ||| || |||| | | | |||||||||||| ||||| | Sbjct 176 CGTCCAG-GTTCTGCTCGTAGCCGTGACACAAGTACTGCATGGCCTTGGCAGCGCGCTTG 118 Query 92889 GGCGTGTCCAGGAGGCCCTCGCGCCGCACGTCCTCGCCCAGGC 92931 || ||||| || | ||| ||||| | ||| |||||||||| Sbjct 117 GGGGTGTCGAGCAAGCCTTCGCGTTGTGGGTCTTCGCCCAGGC 75 >seq2880996 Length=303 Score = 109 bits (120), Expect = 6e-18 Identities = 140/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 92601 TCGGCGATCTGGCGCGTGAGGGCCTCCTGCACCTGGAAGCGGTCGGAAAACATGTCGACG 92660 |||||||||||||| ||||| ||||| | ||| | |||| | | |||||||||| Sbjct 227 TCGGCGATCTGGCGGCTGAGGTTTTCCTGAATCTGCAGGCGGCGCGCATACATGTCGACA 168 Query 92661 ATGCGCGGGATCTTGCTCAGGCCGATGATCCTGCCCGTGGGCAGGTAGCCCACGTGGGCC 92720 || |||| || ||| |||||| | | | |||| | || | || |||| || ||| Sbjct 167 ATCCGCGCGACCTTCGACAGGCCCAGCACCTTGCCGCTCGGGATATACGCCACATGCGCC 108 Query 92721 TTGCCCATAAAGGGCAGCAGATGGTGCTCGCACATGGAGAAAAAGTCGACGTCGCGCACG 92780 ||||| ||||| |||||||| ||||||||||| | ||| | || |||| ||| || Sbjct 107 TTGCCGATAAACGGCAGCAGGTGGTGCTCGCATAGCGAGTACAACTCGATGTCCTTGACC 48 Query 92781 ATCACCATCTCGC 92793 | |||||| |||| Sbjct 47 AGCACCATTTCGC 35 >seq2818177 Length=245 Score = 109 bits (120), Expect = 6e-18 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 1254410 GCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTT 1254469 ||||||||| | |||||||| || || ||| ||||||| |||| |||||||| Sbjct 3 GCGCTTGTTGTAATGCGCCAGGCGCGACGCTTCGCCCGCGATGCGCTCGAAGATGTCGTT 62 Query 1254470 GACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTG 1254529 ||||||||||||||||| ||| | |||| |||||||| ||| ||||||||||| Sbjct 63 GACAAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCGGTGTCCGGGTGCACCTG 122 Query 1254530 CTTGAGCACCTTGTA 1254544 ||| ||||||||||| Sbjct 123 CTTCAGCACCTTGTA 137 >seq3087548 Length=5362 Score = 105 bits (116), Expect = 8e-17 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 92601 TCGGCGATCTGGCGCGTGAGGGCCTCCTGCACCTGGAAGCGGTCGGAAAACATGTCGACG 92660 || ||||||||||| ||||| ||||| | ||| | ||| | | |||||||||| Sbjct 5183 TCAGCGATCTGGCGGCTGAGGTTTTCCTGGATCTGCAGGCGACGCGCATACATGTCGACA 5242 Query 92661 ATGCGCGGGATCTTGCTCAGGCCGATGATCCTGCCCGTGGGCAGGTAGCCCACGTGGGCC 92720 || |||| || ||| |||||| | | |||| | || | ||| ||||||| ||| Sbjct 5243 ATCCGCGCGACCTTCGACAGGCCCAGCACTTTGCCGCTCGGGATGTACGCCACGTGAGCC 5302 Query 92721 TTGCCCATAAAGGGCAGCAGATGGTGCTCGCACATGGAGAAAAAGTCGACGTC 92773 ||||| ||||| |||||||| ||||||||||||| ||| | || |||| ||| Sbjct 5303 TTGCCGATAAACGGCAGCAGGTGGTGCTCGCACAGCGAGTACAACTCGATGTC 5355 >seq2833774 Length=256 Score = 105 bits (116), Expect = 8e-17 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 92601 TCGGCGATCTGGCGCGTGAGGGCCTCCTGCACCTGGAAGCGGTCGGAAAACATGTCGACG 92660 |||||||||||||| ||||| ||||| | ||| | |||| | | |||||||||| Sbjct 180 TCGGCGATCTGGCGGCTGAGGTTTTCCTGAATCTGCAGGCGGCGAGCATACATGTCGACA 121 Query 92661 ATGCGCGGGATCTTGCTCAGGCCGATGATCCTGCCCGTGGGCAGGTAGCCCACGTGGGCC 92720 || |||| || ||| |||||| | | |||| | || | || |||| || ||| Sbjct 120 ATCCGCGCGACCTTCGACAGGCCCAGCACTTTGCCGCTCGGGATATACGCCACATGCGCC 61 Query 92721 TTGCCCATAAAGGGCAGCAGATGGTGCTCGCACATGGAGAAAAAGTCGACGTC 92773 ||||| ||||| |||||||| ||||||||||||| ||| | || |||| ||| Sbjct 60 TTGCCGATAAACGGCAGCAGGTGGTGCTCGCACAGCGAGTACAACTCGATGTC 8 >seq91939 Length=48637 Score = 104 bits (114), Expect = 3e-16 Identities = 144/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| | | | |||||||||||| ||||||||||| || | || Sbjct 45992 GCTTGGCCAGCTCCCCGGGTAGCAACAGGCGCACGGCCGTCTGGATCTCCCGGGATGTGA 45933 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| || |||||| ||||||| || | | Sbjct 45932 TAGTCGAGCGCTTGTTGTAATGCGCCAGGCGTGACGCCTCGCCCGCGATGCGCTCAAAAA 45873 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||| || || || ||||||| ||| | ||| |||||||| || || | Sbjct 45872 TGTCGTTCACGAAGGAATTCATGATGCCCATGGCCTTAGATGAGATGCCAGTATCTGGAT 45813 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| || |||||||| Sbjct 45812 GGACCTGCTTCAGAACCTTGTA 45791 >seq122565 Length=3824 Score = 102 bits (112), Expect = 1e-15 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 ||||||| |||||| ||| | |||||||||||| ||||||||||| || | ||| | Sbjct 2355 TGGCCAGCTCGCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGATGG 2414 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 | ||||||||| | |||||||| || || || | ||||| |||| || | Sbjct 2415 TCGAGCGCTTGTTGTAATGCGCCAGGCGCGACGCTTCCCCAGCAATGCGCTCGAAAATAT 2474 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 | ||||| || |||||||||| ||| | ||| |||||||| ||| ||||| | Sbjct 2475 CATTGACGAAGGAGTTCATGATGCCCATGGCTTTGGACGAGATGCCGGTGTCCGGGTGTA 2534 Query 1254526 CCTGCTTGAGCACCTTGTA 1254544 |||| || ||||| || || Sbjct 2535 CCTGTTTCAGCACTTTATA 2553 >seq184539 Length=18133 Score = 100 bits (110), Expect = 3e-15 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 ||||||| || || ||| | |||||||||||| ||||||||||| | | ||| | Sbjct 8248 TGGCCAGCTCCCCAGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCTGGACGTGATAG 8189 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 || ||||||||| | || ||||| || ||||| | ||||| |||| |||| Sbjct 8188 TGCAGCGCTTGTTATAATGTGCCAGGCGCGACGCCTCACCTGCAATGCGCTCGAAAATGT 8129 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 | ||| ||| || ||||||| ||| | ||| ||||||||| || ||||| | Sbjct 8128 CACTGAGAAAGGAATTCATGATGCTCATGGCCTTTGAAGAGATGCCCGTATCTGGGTGAA 8069 Query 1254526 CCTGCTTGAGCACCTTGTAGATG 1254548 | ||||| | ||||||||||||| Sbjct 8068 CTTGCTTCAACACCTTGTAGATG 8046 >seq2879109 Length=301 Score = 89.7 bits (98), Expect = 6e-12 Identities = 161/230 (70%), Gaps = 8/230 (3%) Strand=Plus/Minus Query 92706 TAGCCCACGTGGGCCTTGCCCATAAAGGGCAGCAGATGGTGCTCGCACATGGAGAAAAAG 92765 ||| |||||||||||||||| |||||||||||||| ||||||||||||| || | | Sbjct 300 TAGGCCACGTGGGCCTTGCCGATAAAGGGCAGCAGGTGGTGCTCGCACAGCGAATACAGC 241 Query 92766 TCGACGTCGCGCACGATCACCATCTCGCCCGAGGCCTCGGCAAAGA--GCG-CGTCGCCG 92822 |||| ||| | ||||||||||||| | | ||| || | ||| ||| | || Sbjct 240 TCGATGTCCTTGAGGATCACCATCTCGTCGTTATCGGAGGCGAACAAGGCGCCGTTGACG 181 Query 92823 ATGGCCTCGGCCAGCGTCATGC-GGTGGCCGCGCGTGCGCTCCACCATGGCCTTGGCCAC 92881 |||| | |||| || ||| | ||| | | | | |||||||||||| | Sbjct 180 ATGGTTT---CCAG-GTTTTGCTCATAGCCATGACACAGGTACTGCATGGCCTTGGCGGC 125 Query 92882 GCGCATCGGCGTGTCCAGGAGGCCCTCGCGCCGCACGTCCTCGCCCAGGC 92931 |||| | || ||||| || | ||| |||||| | ||| |||||||||| Sbjct 124 GCGCTTGGGGGTGTCGAGCAAGCCTTCGCGCTCCGGGTCTTCGCCCAGGC 75 >seq2098547 Length=127 Score = 86.0 bits (94), Expect = 7e-11 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 1254448 CGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGA 1254507 ||||||| |||| |||||||| || || |||||||||| ||| | |||| ||||| Sbjct 9 CGATGCGCTCGAAGATGTCGTTCACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGA 68 Query 1254508 TGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544 |||| ||| ||||| |||||||| ||||||||||| Sbjct 69 TGCCGGTGTCCGGGTGGACCTGCTTCAGCACCTTGTA 105 >seq247149 Length=2651 Score = 86.0 bits (94), Expect = 7e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 1254410 GCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTT 1254469 ||||||||| | |||||||| || |||||| ||||||| || | |||||||| Sbjct 2070 GCGCTTGTTGTAATGCGCCAGGCGCGACGCCTCGCCAGCGATGCGCTCAAAGATGTCGTT 2011 Query 1254470 GACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTG 1254529 || || |||||||| | ||| | |||| |||||||| ||| ||||| ||||| Sbjct 2010 AACGAAGGAGTTCATAATGCCCATAGCCTTGGACGAGATGCCGGTGTCCGGGTGGACCTG 1951 Query 1254530 CTTGAGCACCTTGTA 1254544 ||| ||||||||||| Sbjct 1950 CTTCAGCACCTTGTA 1936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5853681523842987