Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq300236 116 3e-21
seq155098 116 3e-21
seq185925 111 1e-19
seq2709013 89.7 4e-13
seq2340502 84.2 2e-11
seq1887490 84.2 2e-11
seq2278510 82.4 7e-11
>seq300236
Length=7644
Score = 116 bits (128), Expect = 3e-21
Identities = 153/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760
|| |||||||||||| | || || || || |||||||| || || || || || || ||
Sbjct 7411 ACAATGCAGATCTTTGTAAAGACCCTCACTGGTAAAACCATCACTCTGGAGGTGGAGCCC 7470
Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820
| ||||| | || | || || ||||| ||||| ||||| || || ||||| ||
Sbjct 7471 AGTGACACCATTGAGAATGTCAAGGGGAAGATACAAGAAAAAGAGGGCATCCCTCCAGAC 7530
Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880
|| || | ||||||||||| |||||||||||||| ||| | | | | | || || ||
Sbjct 7531 CAGCAGAGGTTGATCTTTGCGGGGAAACAGCTGGAAGATGGGCGCACCCTTTCTGACTAC 7590
Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGT 24912
||||| || || || || || || ||| ||||
Sbjct 7591 AACATCCAGAAAGAGTCCACTCTGCACCTGGT 7622
>seq155098
Length=7669
Score = 116 bits (128), Expect = 3e-21
Identities = 156/217 (72%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||| ||| | || || || || || || || || || ||||| || ||| || |
Sbjct 7438 GATGCAGATTTTTGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCCTC 7379
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|| ||| |||||| ||||| |||||||| || || |||||||| ||||| || ||
Sbjct 7378 GGATACAATAGAAAATGTAAAGACCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCA 7319
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882
||| |||||||||| || || || ||||| ||| | | |||| || || |
Sbjct 7318 GCAAATACTGATCTTTGCTGGCAAGCAACTGGAAGATGAACGTACTTTGTCTGACTACAG 7259
Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919
|||||||||||| || || || || | |||||| ||
Sbjct 7258 CATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGA 7222
>seq185925
Length=7279
Score = 111 bits (122), Expect = 1e-19
Identities = 157/218 (72%), Gaps = 2/218 (1%)
Strand=Plus/Minus
Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762
||||||||| || || || || || || || || || || || || || || ||| ||
Sbjct 517 GATGCAGATTTTCATGAAGACCCTGACGGGGAAGACCATCACTCTTGAGGTCGAACCCTT 458
Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822
|| ||| |||||| ||||| |||||||| || || |||||||| ||||| || ||
Sbjct 457 GGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCA 398
Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACAT-GTCAGATTATA 24881
||| | ||||| ||| || || || ||||| ||| || | || | ||| || || |
Sbjct 397 GCAAAGACAGATCTGTGCTGGCAAGCAACTGGAAGATG-GACATACTTTGTCTGACTACA 339
Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919
||||||||||||| || || || || | |||||| ||
Sbjct 338 ACATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGA 301
>seq2709013
Length=200
Score = 89.7 bits (98), Expect = 4e-13
Identities = 136/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 24737 ACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAA 24796
|| || || ||||| | ||| || | || ||| |||||| ||||| ||||||||
Sbjct 198 ACCATCACTCTCGAGCTTGAACCCTCAGATACAATAGAAAATGTAAAGGCCAAGATCCAG 139
Query 24797 GACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAG 24856
| || |||||||| ||||| || || ||| | ||||| |||| || || || |||||
Sbjct 138 GGTAAGGAAGGAATTCCTCCTGACCAGCAAAGACTGATCATTGCTGGCAAGCAACTGGAA 79
Query 24857 GATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTG 24916
||| | | |||| || || |||||||||||||| || | || || | ||||||
Sbjct 78 GATGGACGTACTTTGTCTGACTACAACATTCAAAAGGAGTCCCCTCTTCATCTAGTGTTG 19
Query 24917 CGATTGCGCGGAGG 24930
|| | || || ||
Sbjct 18 AGACTTCGTGGTGG 5
>seq2340502
Length=142
Score = 84.2 bits (92), Expect = 2e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847
||||||||||||||||| || || || || || || || | ||||||||||| ||||||
Sbjct 38 AAGATCCAAGACAAAGAGGGCATCCCACCAGACCAGCAGAGGTTGATCTTTGCAGGGAAA 97
Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAA 24891
|||||||| ||| | | | | |||| || || ||||| || ||
Sbjct 98 CAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAA 141
>seq1887490
Length=127
Score = 84.2 bits (92), Expect = 2e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847
||||||||||||||||| || || || || || || || | ||||||||||| ||||||
Sbjct 23 AAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGCAGAGATTGATCTTTGCAGGGAAA 82
Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAA 24891
|||||||| ||| | | | | |||| || || ||||| || ||
Sbjct 83 CAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAA 126
>seq2278510
Length=135
Score = 82.4 bits (90), Expect = 7e-11
Identities = 100/134 (75%), Gaps = 2/134 (1%)
Strand=Plus/Minus
Query 24768 CAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAAC 24827
|| |||||| ||||| |||||||| || || |||||||| ||||| || || |||
Sbjct 135 CAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAAA 76
Query 24828 GTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACAT-GTCAGATTATAACATT 24886
| ||||||||| || || || ||||| ||| || | || | ||| || || ||||||
Sbjct 75 GACAGATCTTTGCTGGCAAGCAACTGGAAGATG-GACATACTTTGTCTGACTACAACATT 17
Query 24887 CAAAAGGAATCGAC 24900
|||||||| || ||
Sbjct 16 CAAAAGGAGTCCAC 3
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 432965981494174
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |