Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq300236 116 3e-21 seq155098 116 3e-21 seq185925 111 1e-19 seq2709013 89.7 4e-13 seq2340502 84.2 2e-11 seq1887490 84.2 2e-11 seq2278510 82.4 7e-11 >seq300236 Length=7644 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || |||||||||||| | || || || || |||||||| || || || || || || || Sbjct 7411 ACAATGCAGATCTTTGTAAAGACCCTCACTGGTAAAACCATCACTCTGGAGGTGGAGCCC 7470 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | || | || || ||||| ||||| ||||| || || ||||| || Sbjct 7471 AGTGACACCATTGAGAATGTCAAGGGGAAGATACAAGAAAAAGAGGGCATCCCTCCAGAC 7530 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || | ||||||||||| |||||||||||||| ||| | | | | | || || || Sbjct 7531 CAGCAGAGGTTGATCTTTGCGGGGAAACAGCTGGAAGATGGGCGCACCCTTTCTGACTAC 7590 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||| || || || || || || ||| |||| Sbjct 7591 AACATCCAGAAAGAGTCCACTCTGCACCTGGT 7622 >seq155098 Length=7669 Score = 116 bits (128), Expect = 3e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | || || || || || || || || || ||||| || ||| || | Sbjct 7438 GATGCAGATTTTTGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCCTC 7379 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || ||| |||||| ||||| |||||||| || || |||||||| ||||| || || Sbjct 7378 GGATACAATAGAAAATGTAAAGACCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCA 7319 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| |||||||||| || || || ||||| ||| | | |||| || || | Sbjct 7318 GCAAATACTGATCTTTGCTGGCAAGCAACTGGAAGATGAACGTACTTTGTCTGACTACAG 7259 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919 |||||||||||| || || || || | |||||| || Sbjct 7258 CATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGA 7222 >seq185925 Length=7279 Score = 111 bits (122), Expect = 1e-19 Identities = 157/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || || || || || || || || || || || || || || ||| || Sbjct 517 GATGCAGATTTTCATGAAGACCCTGACGGGGAAGACCATCACTCTTGAGGTCGAACCCTT 458 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || ||| |||||| ||||| |||||||| || || |||||||| ||||| || || Sbjct 457 GGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCA 398 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACAT-GTCAGATTATA 24881 ||| | ||||| ||| || || || ||||| ||| || | || | ||| || || | Sbjct 397 GCAAAGACAGATCTGTGCTGGCAAGCAACTGGAAGATG-GACATACTTTGTCTGACTACA 339 Query 24882 ACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919 ||||||||||||| || || || || | |||||| || Sbjct 338 ACATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGA 301 >seq2709013 Length=200 Score = 89.7 bits (98), Expect = 4e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 24737 ACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAAAAGATCCAA 24796 || || || ||||| | ||| || | || ||| |||||| ||||| |||||||| Sbjct 198 ACCATCACTCTCGAGCTTGAACCCTCAGATACAATAGAAAATGTAAAGGCCAAGATCCAG 139 Query 24797 GACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAG 24856 | || |||||||| ||||| || || ||| | ||||| |||| || || || ||||| Sbjct 138 GGTAAGGAAGGAATTCCTCCTGACCAGCAAAGACTGATCATTGCTGGCAAGCAACTGGAA 79 Query 24857 GATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTG 24916 ||| | | |||| || || |||||||||||||| || | || || | |||||| Sbjct 78 GATGGACGTACTTTGTCTGACTACAACATTCAAAAGGAGTCCCCTCTTCATCTAGTGTTG 19 Query 24917 CGATTGCGCGGAGG 24930 || | || || || Sbjct 18 AGACTTCGTGGTGG 5 >seq2340502 Length=142 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 ||||||||||||||||| || || || || || || || | ||||||||||| |||||| Sbjct 38 AAGATCCAAGACAAAGAGGGCATCCCACCAGACCAGCAGAGGTTGATCTTTGCAGGGAAA 97 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAA 24891 |||||||| ||| | | | | |||| || || ||||| || || Sbjct 98 CAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAA 141 >seq1887490 Length=127 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 ||||||||||||||||| || || || || || || || | ||||||||||| |||||| Sbjct 23 AAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGCAGAGATTGATCTTTGCAGGGAAA 82 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAA 24891 |||||||| ||| | | | | |||| || || ||||| || || Sbjct 83 CAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAA 126 >seq2278510 Length=135 Score = 82.4 bits (90), Expect = 7e-11 Identities = 100/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 24768 CAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAAC 24827 || |||||| ||||| |||||||| || || |||||||| ||||| || || ||| Sbjct 135 CAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAAA 76 Query 24828 GTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACAT-GTCAGATTATAACATT 24886 | ||||||||| || || || ||||| ||| || | || | ||| || || |||||| Sbjct 75 GACAGATCTTTGCTGGCAAGCAACTGGAAGATG-GACATACTTTGTCTGACTACAACATT 17 Query 24887 CAAAAGGAATCGAC 24900 |||||||| || || Sbjct 16 CAAAAGGAGTCCAC 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432965981494174