Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_022059.1 Length=77367 Score E Sequences producing significant alignments: (Bits) Value seq3076860 154 7e-33 seq2830298 125 3e-24 seq2701102 111 7e-20 seq1642876 89.7 2e-13 seq2605055 84.2 1e-11 >seq3076860 Length=1922 Score = 154 bits (170), Expect = 7e-33 Identities = 323/479 (67%), Gaps = 7/479 (1%) Strand=Plus/Minus Query 67928 GGGGACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTGACC 67987 || ||| |||||| |||||||| |||||||||||||| ||||| |||| || | ||| Sbjct 1921 GGCGACATGCACGTGGGCCTGCAAGCCCGCCTGATGTCCCAGGCGCTGCGTAAAATCACC 1862 Query 67988 GGCACGATTGCCAGCACCAACACGCTCACCCTGTGGGTGAATCAGCTGCGCGAGAAGATC 68047 |||| || | | ||||| || | | | || ||| | || ||| ||| Sbjct 1861 GGCAACATCAAGAACGCCAACTGCCTGGTGATCTTCATCAACCAGATCCGTATGAAAATC 1802 Query 68048 GGCA--ACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCGCTTCT 68105 || | || | || ||||| || ||||||||||||||||| || ||| |||| Sbjct 1801 GGTGTGATGTTCGGTA--GCCCG---GAAACCACCACCGGTGGTAACGCGCTGAAGTTCT 1747 Query 68106 ACGCCTCGGTGCGTATGGATGTCCGCAGGATCGCCACCGAGAAGGAAGGCGATGAGGCTG 68165 |||| ||||| ||| ||||| |||| | | || | | | ||||||||| || |||| || Sbjct 1746 ACGCTTCGGTCCGTCTGGATATCCGTCGTACCGGCGCGGTGAAGGAAGGTGACGAGGTTG 1687 Query 68166 TCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCGCCTCCGCACCGCCAGG 68225 |||| | | || ||||| || || || ||||||||| |||| || || ||| |||| Sbjct 1686 TCGGTAGCGAAACCCGCGTTAAAGTCGTGAAGAACAAGGTGGCCCCGCCTTTCCGTCAGG 1627 Query 68226 CTGAGTTTTCCATCGTCTACGGCGAGGGCATTTCCCGCGAGGCCGAACTCCTCGACATGG 68285 | ||||| || | || ||| | ||||| | || | | ||| | ||||| ||| Sbjct 1626 CAGAGTTCCAGATTCTTTATGGCAAAGGCATCTACCTGAACGGCGAGATGATCGACTTGG 1567 Query 68286 CCGTTTCCCGAGGGCTCATCAAGAAGTCTGGGGCCTGGTTCAAGTACGGGGACAAGAACA 68345 ||| | || | || ||||||| || ||||||| ||| | || || | Sbjct 1566 GCGTACTGCACGGTTTTGTCGAGAAGTCCGGTGCCTGGTATGCCTACAACGGCAGCAAAA 1507 Query 68346 TCGGCCAGGGCAAGCCCAAGACCGTGCAGTGGCTGAAGGACAACCCGGACGTCGCCGCC 68404 |||| ||||||||| |||| | | | | ||| |||||||||||| |||| ||| Sbjct 1506 TCGGTCAGGGCAAGGCCAACTCGGCCAAATTCCTGGCGGACAACCCGGATATCGCTGCC 1448 >seq2830298 Length=253 Score = 125 bits (138), Expect = 3e-24 Identities = 179/252 (71%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 67720 CGCCTACATCGACGCCGAACATTCTCTCGACCCTGAGTACGCCGCGGCGCTCGGGGTGGA 67779 ||| | | |||||||||| || | || || ||||| ||||||| || || || | Sbjct 1 CGCGTTCGTCGACGCCGAGCACGCCCTGGATCCTGAATACGCCGGCAAACTGGGCGTCAA 60 Query 67780 TGTCGACAATCTCGTGGTTGTGCAGCCAGACACTGGCGAGCAGGCCCTGGAGATCGTTGA 67839 || ||| | || ||||| |||||| ||||| || ||||| ||||| || ||| || Sbjct 61 CGTTGACGACCTGCTGGTTTCGCAGCCGGACACCGGTGAGCAAGCCCTCGAAATCACCGA 120 Query 67840 CCTTCTCGTCAAGTCTGGCGAGGTTTCCATCATCGTTGTGGACTCTGTGGCGGCCCTGGT 67899 | | || || || || | | | ||||| || ||||| |||||||| ||||| Sbjct 121 CATGCTGGTGCGTTCCAACGCCATCGACGTGATCGTGGTCGACTCCGTGGCGGCGCTGGT 180 Query 67900 GCCGCGGGCGGAGCTCGAAGGGGACATCGGGGACTCGCACGTCGGCCTGCATGCCCGCCT 67959 ||| ||| || ||||||| || || || ||| |||||| |||||||| |||||||| Sbjct 181 ACCGAAGGCAGAAATCGAAGGCGAAATGGGCGACATGCACGTGGGCCTGCAAGCCCGCCT 240 Query 67960 GATGTCTCAGGC 67971 |||||| ||||| Sbjct 241 GATGTCCCAGGC 252 >seq2701102 Length=198 Score = 111 bits (122), Expect = 7e-20 Identities = 130/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 68081 ACCGGTGGTAAGGCTCTGCGCTTCTACGCCTCGGTGCGTATGGATGTCCGCAGGATCGCC 68140 ||||||||||| || ||| |||||||| ||||| ||| |||| ||||| | | || | Sbjct 1 ACCGGTGGTAACGCGCTGAAGTTCTACGCTTCGGTCCGTCTGGACATCCGCCGTACCGGC 60 Query 68141 ACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACGCGCGTGAAGGTTGTCAAGAAC 68200 | | ||||||||| || |||| ||| || | | || ||||| || || || |||||| Sbjct 61 GCGGTGAAGGAAGGTGACGAGGTTGTTGGTAGCGAAACCCGCGTTAAAGTCGTGAAGAAC 120 Query 68201 AAGCTGGCGCCTCCGCACCGCCAGGCTGAGTTTTCCATCGTCTACGGCGAGGGCAT 68256 ||| |||| || || ||| ||||||||||| || |||||||| |||| || Sbjct 121 AAGGTGGCTCCGCCATTCCGTCAGGCTGAGTTCCAGATTCTCTACGGCAAGGGTAT 176 >seq1642876 Length=127 Score = 89.7 bits (98), Expect = 2e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 67871 ATCGTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGACATCGGG 67930 ||||| || ||||| ||||| |||||||| ||| || || | ||||| || || || Sbjct 108 ATCGTGGTCGACTCCGTGGCAGCCCTGGTACCGAAAGCTGAAATTGAAGGCGAAATGGGC 49 Query 67931 GACTCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCG 67977 ||| |||||| |||||||| |||||||||||||| ||||| |||| Sbjct 48 GACATGCACGTGGGCCTGCAAGCCCGCCTGATGTCCCAGGCGCTGCG 2 >seq2605055 Length=181 Score = 84.2 bits (92), Expect = 1e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 68072 GAGACCACCACCGGTGGTAAGGCTCTGCGCTTCTACGCCTCGGTGCGTATGGATGTCCGC 68131 || ||||||||||||||||| || || |||||||| ||||| ||| |||| |||| Sbjct 53 GAAACCACCACCGGTGGTAACGCGTTGAAGTTCTACGCTTCGGTCCGTCTGGACATCCGT 112 Query 68132 AGGATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACGCGCGTGAAGGTT 68191 | | | | | | ||||||||| || |||| |||||||| | || ||||| || || Sbjct 113 CGTACTGGCGCGGTGAAGGAAGGTGACGAGGTTGTCGGCAGCGAAACCCGCGTTAAAGTC 172 Query 68192 GTCAAGAAC 68200 || |||||| Sbjct 173 GTGAAGAAC 181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 238135293234288