Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_022066.1
Length=108297
Score E
Sequences producing significant alignments: (Bits) Value
seq3066367 118 7e-22
seq2899236 91.5 1e-13
seq2606047 87.8 1e-12
seq261985 87.8 1e-12
seq2421911 86.0 4e-12
>seq3066367
Length=1492
Score = 118 bits (130), Expect = 7e-22
Identities = 132/174 (76%), Gaps = 7/174 (4%)
Strand=Plus/Plus
Query 95172 GTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAG 95231
||||| ||||| ||||| |||| |||||||| || |||||||| || || |||| ||
Sbjct 919 GTTGGCCTTGATCAGGCCGGTGATCACATCCACCGACGGCCGCTGGGTGGCGAGGATCAG 978
Query 95232 ATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAAT--GTTGGCCTCGACTTCT 95289
|| || ||||| || || |||||||||||||| || | || ||| | |||| |
Sbjct 979 GTGGATCCCGGCCGCACGGGCCTTCTGGGCGATACGCGCGATCAGTT--CTTCGA---CC 1033
Query 95290 TTCTTGTAGCCGCCCATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGATG 95343
|||||| | || |||||| | ||| |||| |||||||||||| |||||||||
Sbjct 1034 TTCTTGCCGACGATCATCATCATGTCGGCGAATTCGTCGACCACCACCACGATG 1087
>seq2899236
Length=330
Score = 91.5 bits (100), Expect = 1e-13
Identities = 140/198 (71%), Gaps = 4/198 (2%)
Strand=Plus/Plus
Query 95455 TCGGTGACCACCGGCTGCAAA--AGGTGGGGGATACCGTTGTATGGGGTGAGTTCCACCA 95512
|||||||||||||| ||| | ||||| || || || | ||| | ||||||| ||
Sbjct 29 TCGGTGACCACCGG--GCAGAGCAGGTGCGGAATGCCTTCGTAGATCGACAGTTCCAACA 86
Query 95513 TCTTCGGGTCGATCATGATGAGCTTGACCCGATCAGGATTGGCTCGGTAGAGCATGGAAA 95572
||||||||||||||||||| |||||| | ||| || | | | | || || || |
Sbjct 87 TCTTCGGGTCGATCATGATCAGCTTGGCGTCATCCGGGCCAGATTTGAACAGGATCGACA 146
Query 95573 CCAGCATCGAGTTGATGAAGCTGGACTTGCCCGATCCGGTGGCGCCAGCCACCAGCAGGT 95632
| ||||| ||| | | || || || || ||||||| || || ||||||| ||
Sbjct 147 GGATCATCGCGTTCACGCCCACCGATTTACCGGAACCGGTGGTACCGGCTACCAGCAAGT 206
Query 95633 GGGGCATTTTGGCCAGGT 95650
| |||||||| |||||||
Sbjct 207 GCGGCATTTTCGCCAGGT 224
>seq2606047
Length=181
Score = 87.8 bits (96), Expect = 1e-12
Identities = 77/96 (80%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 95172 GTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAG 95231
||||| ||||| | ||| |||| |||||||| || |||||||| ||||| |||| |
Sbjct 40 GTTGGCCTTGATCAAGCCGGTGATCACATCCACCGACGGCCGCTGGGTCGCGAGGATCAA 99
Query 95232 ATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCG 95267
||||||||||| || |||||||| |||||||| ||
Sbjct 100 GTGAATACCGGCCGCACGCGCCTTTTGGGCGATACG 135
>seq261985
Length=1168
Score = 87.8 bits (96), Expect = 1e-12
Identities = 77/96 (80%), Gaps = 0/96 (0%)
Strand=Plus/Minus
Query 95172 GTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAG 95231
||||| ||||| | ||| |||| ||||||||| || |||||||| ||||| |||| |
Sbjct 142 GTTGGCCTTGATCAAGCCGGTGATTACATCCACCGACGGCCGCTGGGTCGCGAGGATCAA 83
Query 95232 ATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCG 95267
||||||||||| || || ||||| |||||||| ||
Sbjct 82 GTGAATACCGGCCGCACGGGCCTTTTGGGCGATACG 47
>seq2421911
Length=154
Score = 86.0 bits (94), Expect = 4e-12
Identities = 80/102 (78%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 95166 CGGCACGTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAG 95225
||| | ||||| ||||| || || |||| || ||||| || |||||||| ||||||||
Sbjct 13 CGGGATGTTGGCCTTGATCAGACCCGTGATCACGTCCACCGATGGCCGCTGAGTCGCCAG 72
Query 95226 GACGAGATGAATACCGGCTGCGCGCGCCTTCTGGGCGATGCG 95267
|| | ||||||||||| || || || ||||||||||| ||
Sbjct 73 GATCAAGTGAATACCGGCCGCCCGGGCTTTCTGGGCGATACG 114
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 333385715070318
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |