Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_022067.1 Length=109960 Score E Sequences producing significant alignments: (Bits) Value seq3066367 109 4e-19 seq2899236 91.5 1e-13 >seq3066367 Length=1492 Score = 109 bits (120), Expect = 4e-19 Identities = 130/174 (75%), Gaps = 7/174 (4%) Strand=Plus/Plus Query 95677 GTTGGATTTGATAAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAG 95736 ||||| ||||| ||||| |||| |||||||| || |||||||| || || |||| || Sbjct 919 GTTGGCCTTGATCAGGCCGGTGATCACATCCACCGACGGCCGCTGGGTGGCGAGGATCAG 978 Query 95737 ATGAATGCCGGCTGCGCGCGCCTTCTGGGCGATGCGGACAAT--GTTGGCCTCGACTTCT 95794 || || ||||| || || |||||||||||||| || | || ||| | |||| | Sbjct 979 GTGGATCCCGGCCGCACGGGCCTTCTGGGCGATACGCGCGATCAGTT--CTTCGA---CC 1033 Query 95795 TTCTTGTAGCCGCCCATCATGAGGTCTGCCAGCTCGTCGACCACTACCACGATG 95848 |||||| | || |||||| | ||| || | ||||||||||| ||||||||| Sbjct 1034 TTCTTGCCGACGATCATCATCATGTCGGCGAATTCGTCGACCACCACCACGATG 1087 >seq2899236 Length=330 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/198 (71%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 95960 TCGGTGACCACCGGCTGCAAA--AGGTGGGGGATACCGTTGTATGGGGTGAGTTCCACCA 96017 |||||||||||||| ||| | ||||| || || || | ||| | ||||||| || Sbjct 29 TCGGTGACCACCGG--GCAGAGCAGGTGCGGAATGCCTTCGTAGATCGACAGTTCCAACA 86 Query 96018 TCTTCGGGTCGATCATGATGAGCTTGACCCGATCAGGATTGGCTCGGTAGAGCATGGAAA 96077 ||||||||||||||||||| |||||| | ||| || | | | | || || || | Sbjct 87 TCTTCGGGTCGATCATGATCAGCTTGGCGTCATCCGGGCCAGATTTGAACAGGATCGACA 146 Query 96078 CCAGCATCGAGTTGATGAAGCTGGACTTGCCCGATCCGGTGGCGCCAGCCACCAGCAGGT 96137 | ||||| ||| | | || || || || ||||||| || || ||||||| || Sbjct 147 GGATCATCGCGTTCACGCCCACCGATTTACCGGAACCGGTGGTACCGGCTACCAGCAAGT 206 Query 96138 GGGGCATTTTGGCCAGGT 96155 | |||||||| ||||||| Sbjct 207 GCGGCATTTTCGCCAGGT 224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338507003512391