Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_022096.1 Length=258139 Score E Sequences producing significant alignments: (Bits) Value seq319551 257 3e-63 seq2952710 246 5e-60 seq2969742 232 1e-55 seq2851609 194 3e-44 seq90113 172 9e-38 seq501696 118 2e-21 seq240294 116 6e-21 seq1752915 98.7 2e-15 seq620055 95.1 2e-14 seq879015 93.3 7e-14 >seq319551 Length=751 Score = 257 bits (284), Expect = 3e-63 Identities = 310/418 (74%), Gaps = 8/418 (2%) Strand=Plus/Minus Query 35465 CTGGCCCTGGTATTTACCGCCGCGATCCTTGTACGAGATTTCGCAGTCCTCGTCACTCTC 35524 ||||||||| || || || |||| |||||||| || | ||| ||| ||||||| || Sbjct 706 CTGGCCCTGATACTTGCCTGCGCGGTCCTTGTAGGACACTTCACAGGCCTCGTCGGACTG 647 Query 35525 GAAAAACAGCATCTGCGCCACACCTTCGTTCGCGTACACACGCGCCGGCAGGTTGGTAGT 35584 | ||||||||||| ||||| ||||| || ||||| | |||||||| |||| || Sbjct 646 CAGGAACAGCATCTGTGCCACGCCTTCATTGGCGTAGATCTTCGCCGGCAACGTGGTGGT 587 Query 35585 GTTGCTGAACTCCAGAGTCACATGACCTTCCCACTCAGGTTCCAGCGGCGTCACGTTGAC 35644 |||| ||||||||| ||||| |||||||||||||| || || ||||||||||||||||| Sbjct 586 GTTGGAGAACTCCAGGGTCACGTGACCTTCCCACTCGGGCTCAAGCGGCGTCACGTTGAC 527 Query 35645 GATGATACCACAGCGCGCGTAGGTGCTCTTACCCAAACACACCACGAGGACGTTGCGCGG 35704 |||||| || ||||||||||||||||| || ||||| || | || |||| ||||| Sbjct 526 GATGATGCCGCAGCGCGCGTAGGTGCTTTTGCCCAAGCAAATGGTCAGCACGTCACGCGG 467 Query 35705 AATGCGGAAGTATTCGACCGTGCGTGCCAGAGCGAAGCTGTTCGGCGGAATCAGGATGC- 35763 |||||||| | || || ||||| ||||| |||||| ||| ||||| || ||||| Sbjct 466 GATGCGGAAAAACTCCACGGTGCGCGCCAGGGCGAAGGAGTTGGGCGGGAT---GATGCA 410 Query 35764 --TGTCAGCCTTAACCGGCTGC-AGGCACTTGGGATCGAAGTTCTTCGGATCAACCACTG 35820 ||| ||| | || | | | || ||| ||||| |||||||| || || | | Sbjct 409 CACGTCGCTCTTGA-CGTCGACGAAGCTCTTTTCGTCGAAATTCTTCGGGTCGACGATCG 351 Query 35821 CGCTGTTGATGTTGGTGAAGACTTCCCACTCATCGGCAGCACGCACGTCATAACCATA 35878 | |||||| |||||||| || | | || ||||| ||||||||| || ||||| Sbjct 350 CCGAGTTGATATTGGTGAACACCTTGAATTCGTCGGCGCAACGCACGTCGTAGCCATA 293 >seq2952710 Length=454 Score = 246 bits (272), Expect = 5e-60 Identities = 304/412 (74%), Gaps = 8/412 (2%) Strand=Plus/Plus Query 35465 CTGGCCCTGGTATTTACCGCCGCGATCCTTGTACGAGATTTCGCAGTCCTCGTCACTCTC 35524 ||||||||| || || ||| | || |||||||| || | ||| ||| ||||||| || Sbjct 46 CTGGCCCTGATACTTGCCGGCACGGTCCTTGTAGGACACTTCACAGGCCTCGTCGGACTG 105 Query 35525 GAAAAACAGCATCTGCGCCACACCTTCGTTCGCGTACACACGCGCCGGCAGGTTGGTAGT 35584 | |||| |||||| ||||| ||||| || ||||| | ||||||| |||| || Sbjct 106 CAGGAACAACATCTGTGCCACGCCTTCATTGGCGTAGATCTTGGCCGGCAACGTGGTGGT 165 Query 35585 GTTGCTGAACTCCAGAGTCACATGACCTTCCCACTCAGGTTCCAGCGGCGTCACGTTGAC 35644 |||| ||||||||| ||||| |||||||||||||| || || ||||||||||||||||| Sbjct 166 GTTGGAGAACTCCAGGGTCACGTGACCTTCCCACTCGGGCTCGAGCGGCGTCACGTTGAC 225 Query 35645 GATGATACCACAGCGCGCGTAGGTGCTCTTACCCAAACACACCACGAGGACGTTGCGCGG 35704 ||| || || ||||||||||||||||| ||||||| || | || |||| ||||| Sbjct 226 GATAATGCCGCAGCGCGCGTAGGTGCTTTTACCCAGGCAGATGGTCAGCACGTCACGCGG 285 Query 35705 AATGCGGAAGTATTCGACCGTGCGTGCCAGAGCGAAGCTGTTCGGCGGAATCAGGATGC- 35763 |||||||| | || || ||||| ||||| |||||| ||| ||||| || ||||| Sbjct 286 GATGCGGAAAAACTCCACGGTGCGCGCCAGGGCGAAGGAGTTTGGCGGGAT---GATGCA 342 Query 35764 --TGTCAGCCTTAACCGGCTGC-AGGCACTTGGGATCGAAGTTCTTCGGATCAACCACTG 35820 ||| ||| | || | | | || ||| |||||||||||||| || || | | Sbjct 343 CACGTCGCTCTTGA-CGTCGACAAAGCTCTTCTCGTCGAAGTTCTTCGGGTCGACGATCG 401 Query 35821 CGCTGTTGATGTTGGTGAAGACTTCCCACTCATCGGCAGCACGCACGTCATA 35872 | |||||| |||||||| || | | |||||||| ||||||||| || Sbjct 402 CCGAGTTGATATTGGTGAACACCTTGAATTCATCGGCGCAACGCACGTCGTA 453 >seq2969742 Length=514 Score = 232 bits (256), Expect = 1e-55 Identities = 301/412 (73%), Gaps = 8/412 (2%) Strand=Plus/Plus Query 35465 CTGGCCCTGGTATTTACCGCCGCGATCCTTGTACGAGATTTCGCAGTCCTCGTCACTCTC 35524 ||| || || || || || | || |||||||| || | ||| || ||||||| || Sbjct 106 CTGACCTTGATACTTGCCCGCACGGTCCTTGTAGGACACTTCACACGCCTCGTCGGACTG 165 Query 35525 GAAAAACAGCATCTGCGCCACACCTTCGTTCGCGTACACACGCGCCGGCAGGTTGGTAGT 35584 | ||||||||||| ||||||||||| || ||||| | |||||||| | |||| || Sbjct 166 CAGGAACAGCATCTGTGCCACACCTTCATTGGCGTAGATTTTCGCCGGCAAGGTGGTGGT 225 Query 35585 GTTGCTGAACTCCAGAGTCACATGACCTTCCCACTCAGGTTCCAGCGGCGTCACGTTGAC 35644 |||| ||||||||| ||||| |||||||||||||| ||||||||||| ||||||||||| Sbjct 226 GTTGGAGAACTCCAGGGTCACGTGACCTTCCCACTCGGGTTCCAGCGGGGTCACGTTGAC 285 Query 35645 GATGATACCACAGCGCGCGTAGGTGCTCTTACCCAAACACACCACGAGGACGTTGCGCGG 35704 |||||| || || || || || ||||| ||||||| || | | |||| || || Sbjct 286 GATGATGCCGCAACGGGCATAAGTGCTTTTACCCAGGCAGATGGTCAATACGTCCCGAGG 345 Query 35705 AATGCGGAAGTATTCGACCGTGCGTGCCAGAGCGAAGCTGTTCGGCGGAATCAGGATGC- 35763 ||| || ||| |||| || ||||| ||||| |||||| ||| ||||| || ||||| Sbjct 346 AATACGAAAGAATTCCACGGTGCGGGCCAGGGCGAAGGAGTTTGGCGGGAT---GATGCA 402 Query 35764 --TGTCAGCCTTAACCGGCTGC-AGGCACTTGGGATCGAAGTTCTTCGGATCAACCACTG 35820 ||| ||| | || | | | || || ||||||||||||||||| || | | Sbjct 403 CACGTCGCTCTTGA-CGTCGACGAAGCTTTTTTCGTCGAAGTTCTTCGGATCGACGATCG 461 Query 35821 CGCTGTTGATGTTGGTGAAGACTTCCCACTCATCGGCAGCACGCACGTCATA 35872 | |||||| |||||||| || | | |||||||| ||||||||| || Sbjct 462 CCGAGTTGATATTGGTGAACACCTTGAATTCATCGGCGCAACGCACGTCGTA 513 >seq2851609 Length=271 Score = 194 bits (214), Expect = 3e-44 Identities = 179/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35529 AACAGCATCTGCGCCACACCTTCGTTCGCGTACACACGCGCCGGCAGGTTGGTAGTGTTG 35588 ||||||||||||||||| |||||||| ||||| | ||||||| | |||| |||||| Sbjct 246 AACAGCATCTGCGCCACGCCTTCGTTGGCGTAGATCTTGGCCGGCAAGGTGGTGGTGTTG 187 Query 35589 CTGAACTCCAGAGTCACATGACCTTCCCACTCAGGTTCCAGCGGCGTCACGTTGACGATG 35648 ||||||||| ||||| || ||||||||||| || || || ||||||||||| |||||| Sbjct 186 GAGAACTCCAGGGTCACGTGGCCTTCCCACTCCGGCTCAAGGGGCGTCACGTTAACGATG 127 Query 35649 ATACCACAGCGCGCGTAGGTGCTCTTACCCAAACACACCACGAGGACGTTGCGCGGAATG 35708 || || ||||| ||||||||||| ||||||| || | || |||| || ||||| Sbjct 126 ATGCCGCAGCGTGCGTAGGTGCTTTTACCCAGGCAGATGGTCAGCACGTCACGGGGAATC 67 Query 35709 CGGAAGTATTCGACCGTGCGTGCCAGAGCGAAGCTGTTCGGCGGAAT 35755 || ||| |||| || ||||| ||||| || ||| ||| |||||||| Sbjct 66 CGAAAGAATTCCACGGTGCGCGCCAGGGCAAAGGAGTTTGGCGGAAT 20 >seq90113 Length=4134 Score = 172 bits (190), Expect = 9e-38 Identities = 151/188 (80%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 35568 GCCGGCAGGTTGGTAGTGTTGCTGAACTCCAGAGTCACATGACCTTCCCACTCAGGTTCC 35627 ||||||| |||| |||||| ||||||||| ||||| ||||||||||||||||| || Sbjct 3928 GCCGGCAAAGTGGTGGTGTTGGAGAACTCCAGGGTCACGTGACCTTCCCACTCAGGCTCA 3987 Query 35628 AGCGGCGTCACGTTGACGATGATACCACAGCGCGCGTAGGTGCTCTTACCCAAACACACC 35687 || ||||||||||| |||||||| || ||||||||||||||||| ||||||| || | Sbjct 3988 AGTGGCGTCACGTTAACGATGATGCCGCAGCGCGCGTAGGTGCTTTTACCCAGGCAGATG 4047 Query 35688 ACGAGGACGTTGCGCGGAATGCGGAAGTATTCGACCGTGCGTGCCAGAGCGAAGCTGTTC 35747 || |||| || ||||| |||||| |||| || ||||| ||||| || ||| ||| Sbjct 4048 GTCAGCACGTCACGGGGAATCCGGAAGAATTCCACGGTGCGCGCCAGGGCAAAGGAGTTT 4107 Query 35748 GGCGGAAT 35755 |||||||| Sbjct 4108 GGCGGAAT 4115 >seq501696 Length=102 Score = 118 bits (130), Expect = 2e-21 Identities = 73/78 (94%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 120228 GCCGGTATAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCTCGGGTTCGATC 120287 ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 78 GCCGGTATAGCTCAGTTGGTAGAGCAACTGACTTGTAATCAGTAGGTCCCGGGTTCGACT 19 Query 120288 CCTGATGCCGGCACCATA 120305 |||| ||||||||||||| Sbjct 18 CCTGGTGCCGGCACCATA 1 >seq240294 Length=15375 Score = 116 bits (128), Expect = 6e-21 Identities = 73/79 (92%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 120228 GCCGGTATAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCTCGGGTTCGATC 120287 |||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 3687 GCCGGTTTAGCTCAGTTGGTAGAGCAACTGACTTGTAATCAGTAGGTCCCGGGTTCGACT 3746 Query 120288 CCTGATGCCGGCACCATAT 120306 |||| |||||||||||||| Sbjct 3747 CCTGGTGCCGGCACCATAT 3765 >seq1752915 Length=127 Score = 98.7 bits (108), Expect = 2e-15 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 247003 GTGCCAGACGTGCGATGATTTCGGAGTTCATGCTGCGATGGTGCGTACGGGCAACGTCCG 247062 || ||| || ||||||||||||||||||||||||||||| || | || || | || | Sbjct 117 GTTCCAAGCGAGCGATGATTTCGGAGTTCATGCTGCGATGATGATTGCGAGCCCCCTCGG 58 Query 247063 CGATGCGTTCGCGCATGCCATCCGGCAAACGCACGACAAACTTGTCGGCGCTGCGGC 247119 | |||||||| ||||| || || |||| ||| ||||| |||||||| || | |||| Sbjct 57 CAATGCGTTCCCGCATTCCGTCTGGCAGACGTACGACGAACTTGTCAGCCGTACGGC 1 >seq620055 Length=105 Score = 95.1 bits (104), Expect = 2e-14 Identities = 58/62 (94%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 120245 GGTAGAGCAACTGACTTGTAATCAGTAGGTCTCGGGTTCGATCCCTGATGCCGGCACCAT 120304 ||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||| Sbjct 105 GGTAGAGCAACTGACTTGTAATCAGTAGGTCCCGGGTTCGACTCCTGGTGCCGGCACCAT 46 Query 120305 AT 120306 || Sbjct 45 AT 44 >seq879015 Length=111 Score = 93.3 bits (102), Expect = 7e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 247003 GTGCCAGACGTGCGATGATTTCGGAGTTCATGCTGCGATGGTGCGTACGGGCAACGTCCG 247062 || ||| || ||||||||||||||||||||||||||||| || | || || || || | Sbjct 11 GTTCCAAGCGAGCGATGATTTCGGAGTTCATGCTGCGATGATGATTGCGAGCCACCTCGG 70 Query 247063 CGATGCGTTCGCGCATGCCATCCGGCAAACGCACGACAAAC 247103 | |||||||| ||||| || || |||| ||| ||||| ||| Sbjct 71 CAATGCGTTCCCGCATTCCGTCTGGCAGACGTACGACGAAC 111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794031135976440