Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_022096.1
Length=258139
Score E
Sequences producing significant alignments: (Bits) Value
seq319551 257 3e-63
seq2952710 246 5e-60
seq2969742 232 1e-55
seq2851609 194 3e-44
seq90113 172 9e-38
seq501696 118 2e-21
seq240294 116 6e-21
seq1752915 98.7 2e-15
seq620055 95.1 2e-14
seq879015 93.3 7e-14
>seq319551
Length=751
Score = 257 bits (284), Expect = 3e-63
Identities = 310/418 (74%), Gaps = 8/418 (2%)
Strand=Plus/Minus
Query 35465 CTGGCCCTGGTATTTACCGCCGCGATCCTTGTACGAGATTTCGCAGTCCTCGTCACTCTC 35524
||||||||| || || || |||| |||||||| || | ||| ||| ||||||| ||
Sbjct 706 CTGGCCCTGATACTTGCCTGCGCGGTCCTTGTAGGACACTTCACAGGCCTCGTCGGACTG 647
Query 35525 GAAAAACAGCATCTGCGCCACACCTTCGTTCGCGTACACACGCGCCGGCAGGTTGGTAGT 35584
| ||||||||||| ||||| ||||| || ||||| | |||||||| |||| ||
Sbjct 646 CAGGAACAGCATCTGTGCCACGCCTTCATTGGCGTAGATCTTCGCCGGCAACGTGGTGGT 587
Query 35585 GTTGCTGAACTCCAGAGTCACATGACCTTCCCACTCAGGTTCCAGCGGCGTCACGTTGAC 35644
|||| ||||||||| ||||| |||||||||||||| || || |||||||||||||||||
Sbjct 586 GTTGGAGAACTCCAGGGTCACGTGACCTTCCCACTCGGGCTCAAGCGGCGTCACGTTGAC 527
Query 35645 GATGATACCACAGCGCGCGTAGGTGCTCTTACCCAAACACACCACGAGGACGTTGCGCGG 35704
|||||| || ||||||||||||||||| || ||||| || | || |||| |||||
Sbjct 526 GATGATGCCGCAGCGCGCGTAGGTGCTTTTGCCCAAGCAAATGGTCAGCACGTCACGCGG 467
Query 35705 AATGCGGAAGTATTCGACCGTGCGTGCCAGAGCGAAGCTGTTCGGCGGAATCAGGATGC- 35763
|||||||| | || || ||||| ||||| |||||| ||| ||||| || |||||
Sbjct 466 GATGCGGAAAAACTCCACGGTGCGCGCCAGGGCGAAGGAGTTGGGCGGGAT---GATGCA 410
Query 35764 --TGTCAGCCTTAACCGGCTGC-AGGCACTTGGGATCGAAGTTCTTCGGATCAACCACTG 35820
||| ||| | || | | | || ||| ||||| |||||||| || || | |
Sbjct 409 CACGTCGCTCTTGA-CGTCGACGAAGCTCTTTTCGTCGAAATTCTTCGGGTCGACGATCG 351
Query 35821 CGCTGTTGATGTTGGTGAAGACTTCCCACTCATCGGCAGCACGCACGTCATAACCATA 35878
| |||||| |||||||| || | | || ||||| ||||||||| || |||||
Sbjct 350 CCGAGTTGATATTGGTGAACACCTTGAATTCGTCGGCGCAACGCACGTCGTAGCCATA 293
>seq2952710
Length=454
Score = 246 bits (272), Expect = 5e-60
Identities = 304/412 (74%), Gaps = 8/412 (2%)
Strand=Plus/Plus
Query 35465 CTGGCCCTGGTATTTACCGCCGCGATCCTTGTACGAGATTTCGCAGTCCTCGTCACTCTC 35524
||||||||| || || ||| | || |||||||| || | ||| ||| ||||||| ||
Sbjct 46 CTGGCCCTGATACTTGCCGGCACGGTCCTTGTAGGACACTTCACAGGCCTCGTCGGACTG 105
Query 35525 GAAAAACAGCATCTGCGCCACACCTTCGTTCGCGTACACACGCGCCGGCAGGTTGGTAGT 35584
| |||| |||||| ||||| ||||| || ||||| | ||||||| |||| ||
Sbjct 106 CAGGAACAACATCTGTGCCACGCCTTCATTGGCGTAGATCTTGGCCGGCAACGTGGTGGT 165
Query 35585 GTTGCTGAACTCCAGAGTCACATGACCTTCCCACTCAGGTTCCAGCGGCGTCACGTTGAC 35644
|||| ||||||||| ||||| |||||||||||||| || || |||||||||||||||||
Sbjct 166 GTTGGAGAACTCCAGGGTCACGTGACCTTCCCACTCGGGCTCGAGCGGCGTCACGTTGAC 225
Query 35645 GATGATACCACAGCGCGCGTAGGTGCTCTTACCCAAACACACCACGAGGACGTTGCGCGG 35704
||| || || ||||||||||||||||| ||||||| || | || |||| |||||
Sbjct 226 GATAATGCCGCAGCGCGCGTAGGTGCTTTTACCCAGGCAGATGGTCAGCACGTCACGCGG 285
Query 35705 AATGCGGAAGTATTCGACCGTGCGTGCCAGAGCGAAGCTGTTCGGCGGAATCAGGATGC- 35763
|||||||| | || || ||||| ||||| |||||| ||| ||||| || |||||
Sbjct 286 GATGCGGAAAAACTCCACGGTGCGCGCCAGGGCGAAGGAGTTTGGCGGGAT---GATGCA 342
Query 35764 --TGTCAGCCTTAACCGGCTGC-AGGCACTTGGGATCGAAGTTCTTCGGATCAACCACTG 35820
||| ||| | || | | | || ||| |||||||||||||| || || | |
Sbjct 343 CACGTCGCTCTTGA-CGTCGACAAAGCTCTTCTCGTCGAAGTTCTTCGGGTCGACGATCG 401
Query 35821 CGCTGTTGATGTTGGTGAAGACTTCCCACTCATCGGCAGCACGCACGTCATA 35872
| |||||| |||||||| || | | |||||||| ||||||||| ||
Sbjct 402 CCGAGTTGATATTGGTGAACACCTTGAATTCATCGGCGCAACGCACGTCGTA 453
>seq2969742
Length=514
Score = 232 bits (256), Expect = 1e-55
Identities = 301/412 (73%), Gaps = 8/412 (2%)
Strand=Plus/Plus
Query 35465 CTGGCCCTGGTATTTACCGCCGCGATCCTTGTACGAGATTTCGCAGTCCTCGTCACTCTC 35524
||| || || || || || | || |||||||| || | ||| || ||||||| ||
Sbjct 106 CTGACCTTGATACTTGCCCGCACGGTCCTTGTAGGACACTTCACACGCCTCGTCGGACTG 165
Query 35525 GAAAAACAGCATCTGCGCCACACCTTCGTTCGCGTACACACGCGCCGGCAGGTTGGTAGT 35584
| ||||||||||| ||||||||||| || ||||| | |||||||| | |||| ||
Sbjct 166 CAGGAACAGCATCTGTGCCACACCTTCATTGGCGTAGATTTTCGCCGGCAAGGTGGTGGT 225
Query 35585 GTTGCTGAACTCCAGAGTCACATGACCTTCCCACTCAGGTTCCAGCGGCGTCACGTTGAC 35644
|||| ||||||||| ||||| |||||||||||||| ||||||||||| |||||||||||
Sbjct 226 GTTGGAGAACTCCAGGGTCACGTGACCTTCCCACTCGGGTTCCAGCGGGGTCACGTTGAC 285
Query 35645 GATGATACCACAGCGCGCGTAGGTGCTCTTACCCAAACACACCACGAGGACGTTGCGCGG 35704
|||||| || || || || || ||||| ||||||| || | | |||| || ||
Sbjct 286 GATGATGCCGCAACGGGCATAAGTGCTTTTACCCAGGCAGATGGTCAATACGTCCCGAGG 345
Query 35705 AATGCGGAAGTATTCGACCGTGCGTGCCAGAGCGAAGCTGTTCGGCGGAATCAGGATGC- 35763
||| || ||| |||| || ||||| ||||| |||||| ||| ||||| || |||||
Sbjct 346 AATACGAAAGAATTCCACGGTGCGGGCCAGGGCGAAGGAGTTTGGCGGGAT---GATGCA 402
Query 35764 --TGTCAGCCTTAACCGGCTGC-AGGCACTTGGGATCGAAGTTCTTCGGATCAACCACTG 35820
||| ||| | || | | | || || ||||||||||||||||| || | |
Sbjct 403 CACGTCGCTCTTGA-CGTCGACGAAGCTTTTTTCGTCGAAGTTCTTCGGATCGACGATCG 461
Query 35821 CGCTGTTGATGTTGGTGAAGACTTCCCACTCATCGGCAGCACGCACGTCATA 35872
| |||||| |||||||| || | | |||||||| ||||||||| ||
Sbjct 462 CCGAGTTGATATTGGTGAACACCTTGAATTCATCGGCGCAACGCACGTCGTA 513
>seq2851609
Length=271
Score = 194 bits (214), Expect = 3e-44
Identities = 179/227 (79%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 35529 AACAGCATCTGCGCCACACCTTCGTTCGCGTACACACGCGCCGGCAGGTTGGTAGTGTTG 35588
||||||||||||||||| |||||||| ||||| | ||||||| | |||| ||||||
Sbjct 246 AACAGCATCTGCGCCACGCCTTCGTTGGCGTAGATCTTGGCCGGCAAGGTGGTGGTGTTG 187
Query 35589 CTGAACTCCAGAGTCACATGACCTTCCCACTCAGGTTCCAGCGGCGTCACGTTGACGATG 35648
||||||||| ||||| || ||||||||||| || || || ||||||||||| ||||||
Sbjct 186 GAGAACTCCAGGGTCACGTGGCCTTCCCACTCCGGCTCAAGGGGCGTCACGTTAACGATG 127
Query 35649 ATACCACAGCGCGCGTAGGTGCTCTTACCCAAACACACCACGAGGACGTTGCGCGGAATG 35708
|| || ||||| ||||||||||| ||||||| || | || |||| || |||||
Sbjct 126 ATGCCGCAGCGTGCGTAGGTGCTTTTACCCAGGCAGATGGTCAGCACGTCACGGGGAATC 67
Query 35709 CGGAAGTATTCGACCGTGCGTGCCAGAGCGAAGCTGTTCGGCGGAAT 35755
|| ||| |||| || ||||| ||||| || ||| ||| ||||||||
Sbjct 66 CGAAAGAATTCCACGGTGCGCGCCAGGGCAAAGGAGTTTGGCGGAAT 20
>seq90113
Length=4134
Score = 172 bits (190), Expect = 9e-38
Identities = 151/188 (80%), Gaps = 0/188 (0%)
Strand=Plus/Plus
Query 35568 GCCGGCAGGTTGGTAGTGTTGCTGAACTCCAGAGTCACATGACCTTCCCACTCAGGTTCC 35627
||||||| |||| |||||| ||||||||| ||||| ||||||||||||||||| ||
Sbjct 3928 GCCGGCAAAGTGGTGGTGTTGGAGAACTCCAGGGTCACGTGACCTTCCCACTCAGGCTCA 3987
Query 35628 AGCGGCGTCACGTTGACGATGATACCACAGCGCGCGTAGGTGCTCTTACCCAAACACACC 35687
|| ||||||||||| |||||||| || ||||||||||||||||| ||||||| || |
Sbjct 3988 AGTGGCGTCACGTTAACGATGATGCCGCAGCGCGCGTAGGTGCTTTTACCCAGGCAGATG 4047
Query 35688 ACGAGGACGTTGCGCGGAATGCGGAAGTATTCGACCGTGCGTGCCAGAGCGAAGCTGTTC 35747
|| |||| || ||||| |||||| |||| || ||||| ||||| || ||| |||
Sbjct 4048 GTCAGCACGTCACGGGGAATCCGGAAGAATTCCACGGTGCGCGCCAGGGCAAAGGAGTTT 4107
Query 35748 GGCGGAAT 35755
||||||||
Sbjct 4108 GGCGGAAT 4115
>seq501696
Length=102
Score = 118 bits (130), Expect = 2e-21
Identities = 73/78 (94%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 120228 GCCGGTATAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCTCGGGTTCGATC 120287
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 78 GCCGGTATAGCTCAGTTGGTAGAGCAACTGACTTGTAATCAGTAGGTCCCGGGTTCGACT 19
Query 120288 CCTGATGCCGGCACCATA 120305
|||| |||||||||||||
Sbjct 18 CCTGGTGCCGGCACCATA 1
>seq240294
Length=15375
Score = 116 bits (128), Expect = 6e-21
Identities = 73/79 (92%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 120228 GCCGGTATAGCTCAGCTGGTAGAGCAACTGACTTGTAATCAGTAGGTCTCGGGTTCGATC 120287
|||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 3687 GCCGGTTTAGCTCAGTTGGTAGAGCAACTGACTTGTAATCAGTAGGTCCCGGGTTCGACT 3746
Query 120288 CCTGATGCCGGCACCATAT 120306
|||| ||||||||||||||
Sbjct 3747 CCTGGTGCCGGCACCATAT 3765
>seq1752915
Length=127
Score = 98.7 bits (108), Expect = 2e-15
Identities = 92/117 (79%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 247003 GTGCCAGACGTGCGATGATTTCGGAGTTCATGCTGCGATGGTGCGTACGGGCAACGTCCG 247062
|| ||| || ||||||||||||||||||||||||||||| || | || || | || |
Sbjct 117 GTTCCAAGCGAGCGATGATTTCGGAGTTCATGCTGCGATGATGATTGCGAGCCCCCTCGG 58
Query 247063 CGATGCGTTCGCGCATGCCATCCGGCAAACGCACGACAAACTTGTCGGCGCTGCGGC 247119
| |||||||| ||||| || || |||| ||| ||||| |||||||| || | ||||
Sbjct 57 CAATGCGTTCCCGCATTCCGTCTGGCAGACGTACGACGAACTTGTCAGCCGTACGGC 1
>seq620055
Length=105
Score = 95.1 bits (104), Expect = 2e-14
Identities = 58/62 (94%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 120245 GGTAGAGCAACTGACTTGTAATCAGTAGGTCTCGGGTTCGATCCCTGATGCCGGCACCAT 120304
||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||
Sbjct 105 GGTAGAGCAACTGACTTGTAATCAGTAGGTCCCGGGTTCGACTCCTGGTGCCGGCACCAT 46
Query 120305 AT 120306
||
Sbjct 45 AT 44
>seq879015
Length=111
Score = 93.3 bits (102), Expect = 7e-14
Identities = 81/101 (80%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 247003 GTGCCAGACGTGCGATGATTTCGGAGTTCATGCTGCGATGGTGCGTACGGGCAACGTCCG 247062
|| ||| || ||||||||||||||||||||||||||||| || | || || || || |
Sbjct 11 GTTCCAAGCGAGCGATGATTTCGGAGTTCATGCTGCGATGATGATTGCGAGCCACCTCGG 70
Query 247063 CGATGCGTTCGCGCATGCCATCCGGCAAACGCACGACAAAC 247103
| |||||||| ||||| || || |||| ||| ||||| |||
Sbjct 71 CAATGCGTTCCCGCATTCCGTCTGGCAGACGTACGACGAAC 111
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 794031135976440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |