Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq300236 132 3e-26
seq155098 109 3e-19
seq66256 104 1e-17
seq185925 95.1 8e-15
seq237091 91.5 9e-14
seq136426 91.5 9e-14
seq46653 87.8 1e-12
>seq300236
Length=7644
Score = 132 bits (146), Expect = 3e-26
Identities = 159/214 (74%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||||||||| | ||| ||| ||||| ||||| ||||| || ||| ||||| ||||
Sbjct 7625 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGCCCATCT 7566
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
||||| || || || || ||||||| | ||||||||| | || | ||||| || ||
Sbjct 7565 TCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGAGGGATGCCCTCTTTTTCT 7506
Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943
| ||| || ||||| || || || | ||| ||| ||| || || | || ||||
Sbjct 7505 TGTATCTTCCCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGG 7448
Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
| || || ||||||||||||||||||||||||||
Sbjct 7447 TTTTACCAGTGAGGGTCTTTACAAAGATCTGCAT 7414
>seq155098
Length=7669
Score = 109 bits (120), Expect = 3e-19
Identities = 153/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822
|||| || || |||| ||| |||||| |||||| | ||||| || | | || |||
Sbjct 7223 CTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGCTGTAGTCAGACAAAGTACGTTCA 7282
Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882
|| ||||||||||| || || ||||||||| ||||||||| | || | || |||||
Sbjct 7283 TCTTCCAGTTGCTTGCCAGCAAAGATCAGTATTTGCTGGTCAGGAGGAATTCCTTCCTTA 7342
Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942
|| | || || || || | |||| | || || ||||| || | || |||
Sbjct 7343 TCCTGGATCTTGGTCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGATG 7402
Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||| ||||| |||||||| ||||| ||||||||
Sbjct 7403 GTCTTCCCCGTCAGGGTCTTCACAAAAATCTGCAT 7437
>seq66256
Length=6617
Score = 104 bits (114), Expect = 1e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||||||||| | ||| ||| ||||| ||||| || || || || |||| ||||
Sbjct 1628 AGGACCAGGTGCAGGGTCTACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 1569
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
||||| ||||| | ||| ||||| || | |||||||| | || | || ||||| ||
Sbjct 1568 TCCAGCTGCTTGCTGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 1509
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || || ||| | || | ||| ||| ||| || || | ||| ||||||
Sbjct 1508 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCTACCTCCAGGGTGATGGTC 1449
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| || || |||||||| || ||||| |||||
Sbjct 1448 TTGCCGGTCAGGGTCTTCACGAAGATTTGCAT 1417
>seq185925
Length=7279
Score = 95.1 bits (104), Expect = 8e-15
Identities = 150/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822
|||| || || |||| ||| |||||| |||||||| ||||| || | | | ||
Sbjct 302 CTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCA 361
Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882
|| ||||||||||| || || ||||| ||| ||||||||| | || | || |||||
Sbjct 362 TCTTCCAGTTGCTTGCCAGCACAGATCTGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTA 421
Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942
|| | || || || || | |||| | || || ||||| |||| || |||
Sbjct 422 TCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCGACCTCAAGAGTGATG 481
Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||| ||||| |||||||| | || ||||||||
Sbjct 482 GTCTTCCCCGTCAGGGTCTTCATGAAAATCTGCAT 516
>seq237091
Length=19548
Score = 91.5 bits (100), Expect = 9e-14
Identities = 85/106 (80%), Gaps = 4/106 (4%)
Strand=Plus/Plus
Query 34874 CCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACAT 34931
||||||||||| | ||||| |||||| || || || | ||| ||| |||||| |
Sbjct 7172 CCCTCCTTGTCTTGGATTTTGGCTTTGAC--ATTCTCAATGGTGTCACTGGGCTCGACCT 7229
Query 34932 CAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||| |||||||||||| ||||| |||||||| ||||||||||||||
Sbjct 7230 CAAGGGTTATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 7275
>seq136426
Length=23094
Score = 91.5 bits (100), Expect = 9e-14
Identities = 164/233 (70%), Gaps = 15/233 (6%)
Strand=Plus/Minus
Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810
||||||||||| | |||||||| ||| | ||| ||| ||||| ||||| ||||| ||
Sbjct 21301 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 21242
Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC---TTGC 34867
||| || || |||| ||||| || || || || ||||||| | |||||||| ||
Sbjct 21241 AGGGTGTGCCCATCTTCCAGCTGTTTCCCTGCAAAGATCAACCTCTGCTGGTCCGGGTGG 21182
Query 34868 GGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGAT-TCATTGGCC 34924
|| |||| |||| || || ||| | || || || ||| ||| ||| |
Sbjct 21181 GGGGTGCCCT-CTTG-----GATCTTGGCCTTG--GCATTCTCGAT-GATGTCACTGGGC 21131
Query 34925 TCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| || || | ||| |||||||| || || | |||||| | |||||||||||
Sbjct 21130 TCCACCTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCATGAAGATCTGCAT 21078
>seq46653
Length=63443
Score = 87.8 bits (96), Expect = 1e-12
Identities = 151/215 (70%), Gaps = 6/215 (3%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAG-GCTGCGCTCATC 34824
|| |||| || | |||| ||| ||||| || || |||| || || || || ||||
Sbjct 29829 AGCACCAAATGCAGGGTGAACTC-TTCTGGATTTTGTAGTTTGACAGAGCACGGCCCATC 29887
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
||||| || || | ||| || | || | |||||||| |||| | || |||| ||
Sbjct 29888 CTCCAGCTGTTTGCTGGCAAAAACTAGATGCTGCTGGTCAGGCGGGATGCCTTCCTGATC 29947
Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942
| ||||| |||||| || || || | ||| ||| || ||| ||| ||| |||
Sbjct 29948 TTGGATTTTGACTTTGAC--ATTCTCAATGGTGTCACTGGGCTTGACCTCAGGGGTGATG 30005
Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||||||| | |||||||| ||||||| ||||||
Sbjct 30006 GTCTTTCCCTTCAGGGTCTTCACAAAGACCTGCAT 30040
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 313433323118309
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |