Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_022747.1 Length=34145 Score E Sequences producing significant alignments: (Bits) Value seq3063309 95.1 3e-15 >seq3063309 Length=1409 Score = 95.1 bits (104), Expect = 3e-15 Identities = 271/415 (65%), Gaps = 4/415 (1%) Strand=Plus/Minus Query 15494 TCACCCGTCCAGAACGAGTAAGCAGGGTGCAT--CTTAGAAGAAGGGGTAGAAAAGTAAG 15551 || |||| |||||||| ||| || ||||| || | | || || |||||||| | Sbjct 415 TCGCCCGACCAGAACGGGTACGCTTGGTGCGAGACTGCGCTG--GGCGTCGAAAAGTAGG 358 Query 15552 TCTTACGCCACTTTTTATGCGTAGCCATCGCCGAGGCGACTTTGTTCAGCTCGTCAAACT 15611 | || |||||||| || || || |||| || ||| || || | || | ||| || | Sbjct 357 TTTTGCGCCACTTCTTGTGGGTGCCCATGGCACTGGCCACGGTGCTGAGTTTGTCGAAGT 298 Query 15612 TGCCGATCCAGAAATACTCATCAATATAAACGTGGCCGTGGTAACTCTGTGCCGTTTTGC 15671 | ||||| ||||||||||| | || |||||||| ||||| | ||| || || ||| Sbjct 297 CACGTATCCAAAAATACTCATCGACGTAGACGTGGCCATGGTAGCCCTGGGCGGTGCTGC 238 Query 15672 CGTTGGTAGAGAGATAGTGCAACTCTGCACCATTCGACAAAGTAGAAGGGTTACCCGTGA 15731 ||||| || | | ||| ||| || || || | || ||||| || || | Sbjct 237 TATTGGTCGACAAGAAACGCAGCTCGGCGCCGTTGCTGAGCGTGATCGGGTTGCCGGTCA 178 Query 15732 TCTCAATGCCTAAAAACTCTTTTGCAATCGCCACAATATAGCGACGGAAAACATCAGCTT 15791 ||| ||| | || ||| ||||||| | | || || | ||||||| || | | Sbjct 177 GCTCGATGTCGAACCACTGCTTTGCAAACTGGATGATGTAACTGCGGAAAATTTCCGACT 118 Query 15792 GAGCGCGAGAGGCTGAGAGAAATATCTGGTTATCGCCCGTGAGAATCGCCTGTTCTAACG 15851 | | ||| ||| || || || | |||||| ||||| || || | || | |||| Sbjct 117 GCGAGCGGCTGGCCGACAGGAACACCTGGTTGTCGCCGGTCAGCACGGCGTCCATGAACG 58 Query 15852 CTTCACCTGCAAAGTAATAGGTTGCGCCAATTTGGCGAGACTTGAGAATGTTACG 15906 |||| || || ||||| || || ||| | ||||| || || ||||| || Sbjct 57 CTTCGCCGGCGAAGTAGTACGTCAGGCCCACCTGGCGGCTTTTCAGGATGTTGCG 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 105139485902274