Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_022749.1 Length=39758 Score E Sequences producing significant alignments: (Bits) Value seq3088379 549 5e-152 seq212862 271 2e-68 seq3087477 255 1e-63 seq3082850 80.6 7e-11 >seq3088379 Length=10556 Score = 549 bits (608), Expect = 5e-152 Identities = 1030/1487 (69%), Gaps = 55/1487 (4%) Strand=Plus/Plus Query 751 ATTCAGCTGTTGCCGCACACCAAGGGGGAGTGGGCATTCAAACGGATGCCCATCACGCTG 810 || ||||| | |||||||||||||| |||||||||||||| || || |||||||| Sbjct 604 ATGCAGCTTCTACCGCACACCAAGGGCGAGTGGGCATTCAAGCGTCAGCTGATCACGCTC 663 Query 811 GAGCCGTGGCAGCTATTTGTGATCTGCTGTG-CGTTTGGCTGGGTCAATAA--AGGCACC 867 ||||| |||||||| |||| | || ||| | || |||||||| || || ||| | Sbjct 664 GAGCCTTGGCAGCTTTTTGGCCTA-GCCGTGACATTCGGCTGGGTAAAGAAGAAGGG--C 720 Query 868 CGGTTGCGCCGCTTCCGGGAGGTGTACACCGAAATCCCCCGTAAGAACGGCAAATCAGCA 927 || ||||| ||||| || ||| ||| | ||| | || ||||||||||| | Sbjct 721 GGGCACCGCCGGTTCCGTGAAAGCTACTGGGAAGTGCCCAGAAAAAACGGCAAATCGGTT 780 Query 928 ATCTCTGCCGGTG---TTGCCCT--GTATTGTT--TTGCCTGTGATAACGAGTTTGGCGC 980 | |||||||| ||| | | | || ||| | ||| ||| |||||| ||||| Sbjct 781 GT---TGCCGGTGGCGTTGGCATCAGCAT-GTTCGTCGCC---GATGGCGAGTTCGGCGC 833 Query 981 GGAAGTGTATTCCGGTGCCACGACAGAGAAACAGGCGTGGGAAGTCTTTCGCCCGGCGCG 1040 || ||||| | || || || || ||||||||||| ||||| || || || || || Sbjct 834 CGAGGTGTACGCAGGGGCGACCACTGAGAAACAGGCCTGGGAGGTTTTCCGGCCTGCCAA 893 Query 1041 ACTGATGTGTAAACGCACACCC-ATGCTGACGGAAGCGTTCGGGATTGAGGTTAACGCCT 1099 |||||| || | | | ||| ||||||| | || ||| || ||||| ||||||| Sbjct 894 GCTGATG-GTCAGCAAATCCCCGATGCTGATTCAGGCCGCCGGCATCGAGGTGAACGCCT 952 Query 1100 CAAACATGAACCGTCCGGAGGATGGCGCGCGGTTTGAACCGCTGATCGGCAACCCAGGTG 1159 | || |||||| ||| || | || || || || |||||||| ||||| || | Sbjct 953 CGAATATGAACATCCCGTCCGACTTCAGTCGCTTCGAGCCACTGATCGGTAACCCTGGCG 1012 Query 1160 ATGGTTCATCACCCCACTGTGCCGTGGTTGATGAATATCACGAGCATGCCACCGATGCGC 1219 | || |||| || ||| ||| | || || || || ||||| || | || || | Sbjct 1013 ACGGCGCATCGCCGAGCTGCGCCATCGTCGACGAGTACCACGAACACCCAACGTCGGCAC 1072 Query 1220 TTTATACCACAATGCTTACCGGGATGGGGGCGCGACGTCAGCCACTGATGTGGGCCATCA 1279 || ||| ||||| || |||||||| || || |||||||||||||||| ||||| Sbjct 1073 AGTACGACACCATGCTCACAGGGATGGGCGCCCGGCGTCAGCCACTGATGTTCATCATCA 1132 Query 1280 CCACCGCCGGGTACAACATTGAGGGGCCGTGCTACGACAAACGGCGGGAAGTCATCGAGA 1339 |||||||||| | ||||||| || |||||||||||||| || || | ||| |||||| Sbjct 1133 CCACCGCCGGCGCCGACATTGAAGGCCCGTGCTACGACAAGCGCCGCCAGGTCGTCGAGA 1192 Query 1340 TGCTCAACGGCTCGGTGCCTAACGATGAACTGTTCGGGATCATCTATACCGTTGATGAAG 1399 ||||| ||| | ||||| | || || | ||||| |||| || |||| || | Sbjct 1193 TGCTCGCCGGTACCGTGCCGGATGAAGAGTTATTCGGCTGGATCTGGACGCTTGACGAGG 1252 Query 1400 GTGACGACTGGACCGACCCGCAGGTGCTGGAAAAAGCCAATCCAAATATTGGCGTGTCGG 1459 | |||||||||||||| ||| || |||||| || ||||| || || ||||| |||| Sbjct 1253 GCGACGACTGGACCGATCCGAAGATGCTGGCCAAGGCCAACCCGAACCACGGCGTCTCGG 1312 Query 1460 TTTATCGCGAATTTTTGTTAAGTCAGCAGCAGCGTGCGAAAAATAACGCCCGTCTGGCAA 1519 | | || || | | ||||||||| | || | || ||| | || | Sbjct 1313 TGTTTCAAGAGTACCTCGAGAGTCAGCAGGCCAGGGCCATCCGCTCTGCGCGTTTTGCCA 1372 Query 1520 ACGTCTTTAAAACAAAACACCTCAATATCTGGGTG-TCGGCGCGTTCGGCGTATTTCAAC 1578 || || ||||| || |||||||| |||||||| || | || |||| | || |||| Sbjct 1373 ACACATTCAAAACTAAGCACCTCAACCTCTGGGTGAGCGCCAAGTCCGGC-TTTTACAAC 1431 Query 1579 CTGGTGAGCTGGCAGAGCTGCGAGGATAAATCACTGACTCTTGAGCAGTTCGAGGGGCAG 1638 ||| |||||| | |||||| || | || ||||| || ||||||||||||||||| Sbjct 1432 ATGGAAAGCTGGAAAGCCTGCGAAGACACGTCGCTGACCCTGGAGCAGTTCGAGGGGCAA 1491 Query 1639 CCGTGCATTCTGGCCTTTGACCTGGCGCGTAAGCTGGATATGAACAGCATGGCGCGACTT 1698 ||| || | ||| ||| ||||||| ||||| ||||||||| || || || | | Sbjct 1492 GAGTGGATAGCCGGCTTCGACTTGGCGCGCAAGCTCGATATGAAC-TCAAGG-GCCAGGT 1549 Query 1699 TATACCCGCGAG--ATTGACGGTAAAACGCATTACTACAGTGTGGCCCCGCGTTTCTGGG 1756 | | | ||| | |||||||| || | || |||||||| | || ||| ||||||| Sbjct 1550 TGTTCTGGCGTGTAATTGACGGGAAGAACCACTACTACAGCATTGCTCCGAAATTCTGGG 1609 Query 1757 TACCGTATGACACGGTGTATAGCGTCGAGAAAAATGAAGATCGCCGGACAGCCGAACGCT 1816 | || |||||||| | | | | ||| || || || | || || || | Sbjct 1610 TCCCTTATGACACCGCCTTCAACACCGATAACAA---------GCGCATGGCTGAGCGTT 1660 Query 1817 TTCAGAAATGGGTGGA----AATGGGCGTTCTGACCGTTACCGATGGTGCAGAGGTGGAT 1872 | ||| ||| | | || || |||| || ||||| ||||| ||||| || Sbjct 1661 TCCAGGCCTGGATTCACTCCAA---GC-ATCTGGATGTGACCGACGGTGCGGAGGTCGAC 1716 Query 1873 TATCGCTACATCCTCGAAGAGGCCAAAGCGGCGAACAA--AATCAGCCCGGTCAGTGAGT 1930 || ||| | ||||| || || |||| | ||||||| | || | ||| || | || | Sbjct 1717 TACCGCGAAATCCTTGAGGACACCAAGGAGGCGAACCACCAAGC--CCCTGTGCGCGAAT 1774 Query 1931 CACCCATCGACCCTTTCGGAGCGACCGGGCTGTCACATGACCTTGCTGATGAAGACCTGA 1990 || || |||||| || || || || ||| |||||||||| ||| | | | | Sbjct 1775 GCCCAATTGACCCTCATGGCGCAACAGGCCTGAGTCATGACCTTGATGACCAGGGTTTCA 1834 Query 1991 ATCCCGTTACTATCGTCCAGAACTTCGCCAATATGTCCGACCCGATGAAAGAGCTGGAGG 2050 |||| || || ||| ||||||| | |||| ||||| || ||||||||||||||||||| Sbjct 1835 ATCCGGTCACCATCACGCAGAACTACACCAACATGTCGGATCCGATGAAAGAGCTGGAGG 1894 Query 2051 CAGCGATTGAATCGGGACGCTTTCATCATGACGGCAATCCCATCATGACCTGGTGTATCG 2110 | ||||| || | || || || |||||||||||||| || |||||||||||||| ||| Sbjct 1895 CCGCGATAGAGGCTGGCCGTTTCCATCATGACGGCAACCCGATCATGACCTGGTGCGTCG 1954 Query 2111 GCAATGTGGTCGGCAAAAACATGCCAGGTAACGATGATTTAGTGAAGCCCG-TCAAAGAG 2169 |||| ||| ||||||| ||| |||| ||||||||||| | ||| ||||| ||||| || Sbjct 1955 GCAACGTGATCGGCAAGAACTTGCCCGGTAACGATGACATCGTG-CGCCCGATCAAACAG 2013 Query 2170 CAGGCG--GAAAACAAAATCGATGGTGCAGTTGCGCTGATTATGGCG 2214 |||| || ||||| ||||| || || || |||||||||||| || Sbjct 2014 --GGCGATGACAACAAGATCGACGGCGCTGTCGCGCTGATTATGACG 2058 >seq212862 Length=62768 Score = 271 bits (300), Expect = 2e-68 Identities = 464/666 (70%), Gaps = 9/666 (1%) Strand=Plus/Plus Query 18654 AACCATGCCGACGCTTACTGTTATAAAACATTTCGATGTAATCAAAAATATCACCGCGAG 18713 ||||||| ||||| || ||| || ||||||||||||||||| || | ||| | |||| Sbjct 59465 AACCATGTCGACGTTTTGAGTTGTAGAACATTTCGATGTAATCGAACACATCGCTACGAG 59524 Query 18714 CTTCTTCTCGCGTTCCGTAGATCTTTTTCTTTATCCGTTCACGTTTCAGTAGCTGGAAAA 18773 | ||||| || | ||| || || ||| |||||||| |||||||| |||||||||| Sbjct 59525 CATCTTCCCGTCTGGTGTAAATTTTCCGCTTGATCCGTTCTCGTTTCAGAAGCTGGAAAA 59584 Query 18774 AACTTTCTGCGACTGCGTTGTCATGACAGTTACCGCGACGGCTCATACTGCCCTCCAGCC 18833 | || || || || ||||||||||||||||| || ||||| ||||| ||| | ||| Sbjct 59585 AGCTCTCGGCCACGGCGTTGTCATGACAGTTGCCTCGACGACTCATGCTGGCAACCAAAT 59644 Query 18834 CGTGTGATTTCAGGAACGACTGCCACTCATAGCTTGTGTACTGACTGCCTTGATCAGAAT 18893 || || |||| || |||| || |||| ||||||| ||||| || || |||| Sbjct 59645 TGTTTGCCTTCAAAAAGCTGCGCCAATCGGAGCTGCTGTACTGGCTGCCCTGGTCGGAAT 59704 Query 18894 GAACCAGCACCTGCTTTTGAGGATTACGTCGCCACACGGCCATCAGAAGTGCATTCAGGA 18953 |||||| ||||| | | || ||||| | ||| || ||||||| | |||| | Sbjct 59705 GAACCATCACCTCTTGCTTCGGTTTACGCCTCCAAACCGCCATCAACAACGCATCAATAG 59764 Query 18954 CAATATCCTTTGTCATCCGGGGCTGCATTGACCAGCCAATAACTTTGCGCGAGAACAGGT 19013 | | ||| | |||||| | | || |||||||||||||| || | || || |||| | Sbjct 59765 CCAAATCACTGGTCATCTGCGCCTTCATTGACCAGCCAACGACCTGACGAGAATACAGAT 59824 Query 19014 CAACAACCACAGCCAGATACAGCCAGCCTTCGTGAGTCCGGATGTAGGTGATGTCCGTTA 19073 | | ||||| |||| ||||| ||||||||| | || || |||||||||||||| |||| Sbjct 59825 CCAGCACCACCGCCAAATACAACCAGCCTTCATACGTACGAATGTAGGTGATGTCGGTTA 59884 Query 19074 CCCAACGCTCATCCGGTGCTTCCGAGTTGAACTGCCGCTGGAGCCTGTTGGGCGTCACGA 19133 ||||| || | ||| | | | |||||| |||| ||| ||||| | ||| Sbjct 59885 CCCAAACCTTGTTGGGTTCCACGACATCGAACTGGCGCTTCAGCAAATTGGGTGAGGCGA 59944 Query 19134 -TGCTGG-TTTCACCCTTACGTGCCCGTG-GGCTACGGTACCCGACCTGAGCCCTTATCC 19190 ||||| || | || ||| | || | | ||| || || || ||||| | | || Sbjct 59945 CCGCTGGCTTACCGCCGTACTTTCCAGGGCGGCGTCGATAACCTGTCTGAGAGCGCAGCC 60004 Query 19191 CGGCACGCTTCATCAG--TCGCCAGAC-ACGGTTAACTCCGCACTGTTGTCCGGTATCCC 19247 | || | |||||| | |||| || | ||| ||||| || ||| || | Sbjct 60005 CTTCAAGACGCATCAGCCTTGCCACACGAAGGT---GCCCGCAAACTTCACCGACCTCGC 60061 Query 19248 GCAGGTCGAGGTGGATCTTGCGATAACCATAAACGCAACCCGACTCCAGCCAGAACTGCT 19307 |||| ||| ||||| |||||||| |||||||||| || |||||||||| | |||| Sbjct 60062 GCAGATCGTTATGGATTTTGCGATAGCCATAAACGCCGCCGCTCTCCAGCCAGGAATGCT 60121 Query 19308 TTATCA 19313 | |||| Sbjct 60122 TGATCA 60127 >seq3087477 Length=5220 Score = 255 bits (282), Expect = 1e-63 Identities = 300/406 (74%), Gaps = 0/406 (0%) Strand=Plus/Minus Query 18673 GTTATAAAACATTTCGATGTAATCAAAAATATCACCGCGAGCTTCTTCTCGCGTTCCGTA 18732 ||| |||||||| ||||||||||| || | |||| | ||||| || | || || ||| Sbjct 1757 GTTGTAAAACATCTCGATGTAATCGAACACATCATCTCGAGCATCCTGGCGTGTAGTGTA 1698 Query 18733 GATCTTTTTCTTTATCCGTTCACGTTTCAGTAGCTGGAAAAAACTTTCTGCGACTGCGTT 18792 ||| || ||| |||||||| || ||||| | ||||||||| || || || || |||| Sbjct 1697 GATTTTACGCTTGATCCGTTCCCGCTTCAGCAACTGGAAAAAGCTCTCCGCCACAGCGTC 1638 Query 18793 GTCATGACAGTTACCGCGACGGCTCATACTGCCCTCCAGCCCGTGTGATTTCAGGAACGA 18852 ||| || || ||||| ||||| ||||| ||| | |||| || | ||||| ||| Sbjct 1637 GTCGTGGCAATTACCTCGACGACTCATGCTGGCTACCAGGTTGTTAGCTTTCAAGAAGCT 1578 Query 18853 CTGCCACTCATAGCTTGTGTACTGACTGCCTTGATCAGAATGAACCAGCACCTGCTTTTG 18912 |||| || |||| ||||||||||||||||||| || || | || ||||| | | Sbjct 1577 TCGCCAGTCTGAGCTGCTGTACTGACTGCCTTGATCCGAGTGGATCATCACCTCTTGCTT 1518 Query 18913 AGGATTACGTCGCCACACGGCCATCAGAAGTGCATTCAGGACAATATCCTTTGTCATCCG 18972 || ||||||| ||| || |||||||| ||||||| | | | | || | |||||| | Sbjct 1517 CGGCTTACGTCTCCAAACCGCCATCAGCAGTGCATCAATGGCTACGTCGCTGGTCATCTG 1458 Query 18973 GGGCTGCATTGACCAGCCAATAACTTTGCGCGAGAACAGGTCAACAACCACAGCCAGATA 19032 | || ||||||||| ||||| | | ||| || ||||| || | ||||| |||| ||| Sbjct 1457 CGACTTCATTGACCAACCAATGATCTGGCGTGAAAACAGATCGAGCACCACGGCCAAATA 1398 Query 19033 CAGCCAGCCTTCGTGAGTCCGGATGTAGGTGATGTCCGTTACCCAA 19078 |||||||||||| | || ||||||||||| ||||| || |||||| Sbjct 1397 CAGCCAGCCTTCATATGTTCGGATGTAGGTAATGTCTGTGACCCAA 1352 >seq3082850 Length=2593 Score = 80.6 bits (88), Expect = 7e-11 Identities = 86/114 (75%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 18710 CGAGCTTCTTCTCGCGTTCCGTAGATCTTTTTCTTTATCCGTTCACGTTTCAGTAGCTGG 18769 ||||| |||| ||||| |||||| || | | ||| || | |||||||| |||||| Sbjct 2348 CGAGCATCTTGTCGCGAGGTGTAGATTTTCCGCCTGATCTGTGCCCGTTTCAGAAGCTGG 2289 Query 18770 AAAAAACTTTCTGCGACTGCGTTGTCATGACAGTTACCGCGACGGCTCATACTG 18823 ||||| || | || || ||||||| ||||||||| || || || ||||| ||| Sbjct 2288 AAAAAGCTCGCGGCCACGGCGTTGTTATGACAGTTGCCTCGGCGACTCATGCTG 2235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122442325037040