Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_022749.1
Length=39758
Score E
Sequences producing significant alignments: (Bits) Value
seq3088379 549 5e-152
seq212862 271 2e-68
seq3087477 255 1e-63
seq3082850 80.6 7e-11
>seq3088379
Length=10556
Score = 549 bits (608), Expect = 5e-152
Identities = 1030/1487 (69%), Gaps = 55/1487 (4%)
Strand=Plus/Plus
Query 751 ATTCAGCTGTTGCCGCACACCAAGGGGGAGTGGGCATTCAAACGGATGCCCATCACGCTG 810
|| ||||| | |||||||||||||| |||||||||||||| || || ||||||||
Sbjct 604 ATGCAGCTTCTACCGCACACCAAGGGCGAGTGGGCATTCAAGCGTCAGCTGATCACGCTC 663
Query 811 GAGCCGTGGCAGCTATTTGTGATCTGCTGTG-CGTTTGGCTGGGTCAATAA--AGGCACC 867
||||| |||||||| |||| | || ||| | || |||||||| || || ||| |
Sbjct 664 GAGCCTTGGCAGCTTTTTGGCCTA-GCCGTGACATTCGGCTGGGTAAAGAAGAAGGG--C 720
Query 868 CGGTTGCGCCGCTTCCGGGAGGTGTACACCGAAATCCCCCGTAAGAACGGCAAATCAGCA 927
|| ||||| ||||| || ||| ||| | ||| | || ||||||||||| |
Sbjct 721 GGGCACCGCCGGTTCCGTGAAAGCTACTGGGAAGTGCCCAGAAAAAACGGCAAATCGGTT 780
Query 928 ATCTCTGCCGGTG---TTGCCCT--GTATTGTT--TTGCCTGTGATAACGAGTTTGGCGC 980
| |||||||| ||| | | | || ||| | ||| ||| |||||| |||||
Sbjct 781 GT---TGCCGGTGGCGTTGGCATCAGCAT-GTTCGTCGCC---GATGGCGAGTTCGGCGC 833
Query 981 GGAAGTGTATTCCGGTGCCACGACAGAGAAACAGGCGTGGGAAGTCTTTCGCCCGGCGCG 1040
|| ||||| | || || || || ||||||||||| ||||| || || || || ||
Sbjct 834 CGAGGTGTACGCAGGGGCGACCACTGAGAAACAGGCCTGGGAGGTTTTCCGGCCTGCCAA 893
Query 1041 ACTGATGTGTAAACGCACACCC-ATGCTGACGGAAGCGTTCGGGATTGAGGTTAACGCCT 1099
|||||| || | | | ||| ||||||| | || ||| || ||||| |||||||
Sbjct 894 GCTGATG-GTCAGCAAATCCCCGATGCTGATTCAGGCCGCCGGCATCGAGGTGAACGCCT 952
Query 1100 CAAACATGAACCGTCCGGAGGATGGCGCGCGGTTTGAACCGCTGATCGGCAACCCAGGTG 1159
| || |||||| ||| || | || || || || |||||||| ||||| || |
Sbjct 953 CGAATATGAACATCCCGTCCGACTTCAGTCGCTTCGAGCCACTGATCGGTAACCCTGGCG 1012
Query 1160 ATGGTTCATCACCCCACTGTGCCGTGGTTGATGAATATCACGAGCATGCCACCGATGCGC 1219
| || |||| || ||| ||| | || || || || ||||| || | || || |
Sbjct 1013 ACGGCGCATCGCCGAGCTGCGCCATCGTCGACGAGTACCACGAACACCCAACGTCGGCAC 1072
Query 1220 TTTATACCACAATGCTTACCGGGATGGGGGCGCGACGTCAGCCACTGATGTGGGCCATCA 1279
|| ||| ||||| || |||||||| || || |||||||||||||||| |||||
Sbjct 1073 AGTACGACACCATGCTCACAGGGATGGGCGCCCGGCGTCAGCCACTGATGTTCATCATCA 1132
Query 1280 CCACCGCCGGGTACAACATTGAGGGGCCGTGCTACGACAAACGGCGGGAAGTCATCGAGA 1339
|||||||||| | ||||||| || |||||||||||||| || || | ||| ||||||
Sbjct 1133 CCACCGCCGGCGCCGACATTGAAGGCCCGTGCTACGACAAGCGCCGCCAGGTCGTCGAGA 1192
Query 1340 TGCTCAACGGCTCGGTGCCTAACGATGAACTGTTCGGGATCATCTATACCGTTGATGAAG 1399
||||| ||| | ||||| | || || | ||||| |||| || |||| || |
Sbjct 1193 TGCTCGCCGGTACCGTGCCGGATGAAGAGTTATTCGGCTGGATCTGGACGCTTGACGAGG 1252
Query 1400 GTGACGACTGGACCGACCCGCAGGTGCTGGAAAAAGCCAATCCAAATATTGGCGTGTCGG 1459
| |||||||||||||| ||| || |||||| || ||||| || || ||||| ||||
Sbjct 1253 GCGACGACTGGACCGATCCGAAGATGCTGGCCAAGGCCAACCCGAACCACGGCGTCTCGG 1312
Query 1460 TTTATCGCGAATTTTTGTTAAGTCAGCAGCAGCGTGCGAAAAATAACGCCCGTCTGGCAA 1519
| | || || | | ||||||||| | || | || ||| | || |
Sbjct 1313 TGTTTCAAGAGTACCTCGAGAGTCAGCAGGCCAGGGCCATCCGCTCTGCGCGTTTTGCCA 1372
Query 1520 ACGTCTTTAAAACAAAACACCTCAATATCTGGGTG-TCGGCGCGTTCGGCGTATTTCAAC 1578
|| || ||||| || |||||||| |||||||| || | || |||| | || ||||
Sbjct 1373 ACACATTCAAAACTAAGCACCTCAACCTCTGGGTGAGCGCCAAGTCCGGC-TTTTACAAC 1431
Query 1579 CTGGTGAGCTGGCAGAGCTGCGAGGATAAATCACTGACTCTTGAGCAGTTCGAGGGGCAG 1638
||| |||||| | |||||| || | || ||||| || |||||||||||||||||
Sbjct 1432 ATGGAAAGCTGGAAAGCCTGCGAAGACACGTCGCTGACCCTGGAGCAGTTCGAGGGGCAA 1491
Query 1639 CCGTGCATTCTGGCCTTTGACCTGGCGCGTAAGCTGGATATGAACAGCATGGCGCGACTT 1698
||| || | ||| ||| ||||||| ||||| ||||||||| || || || | |
Sbjct 1492 GAGTGGATAGCCGGCTTCGACTTGGCGCGCAAGCTCGATATGAAC-TCAAGG-GCCAGGT 1549
Query 1699 TATACCCGCGAG--ATTGACGGTAAAACGCATTACTACAGTGTGGCCCCGCGTTTCTGGG 1756
| | | ||| | |||||||| || | || |||||||| | || ||| |||||||
Sbjct 1550 TGTTCTGGCGTGTAATTGACGGGAAGAACCACTACTACAGCATTGCTCCGAAATTCTGGG 1609
Query 1757 TACCGTATGACACGGTGTATAGCGTCGAGAAAAATGAAGATCGCCGGACAGCCGAACGCT 1816
| || |||||||| | | | | ||| || || || | || || || |
Sbjct 1610 TCCCTTATGACACCGCCTTCAACACCGATAACAA---------GCGCATGGCTGAGCGTT 1660
Query 1817 TTCAGAAATGGGTGGA----AATGGGCGTTCTGACCGTTACCGATGGTGCAGAGGTGGAT 1872
| ||| ||| | | || || |||| || ||||| ||||| ||||| ||
Sbjct 1661 TCCAGGCCTGGATTCACTCCAA---GC-ATCTGGATGTGACCGACGGTGCGGAGGTCGAC 1716
Query 1873 TATCGCTACATCCTCGAAGAGGCCAAAGCGGCGAACAA--AATCAGCCCGGTCAGTGAGT 1930
|| ||| | ||||| || || |||| | ||||||| | || | ||| || | || |
Sbjct 1717 TACCGCGAAATCCTTGAGGACACCAAGGAGGCGAACCACCAAGC--CCCTGTGCGCGAAT 1774
Query 1931 CACCCATCGACCCTTTCGGAGCGACCGGGCTGTCACATGACCTTGCTGATGAAGACCTGA 1990
|| || |||||| || || || || ||| |||||||||| ||| | | | |
Sbjct 1775 GCCCAATTGACCCTCATGGCGCAACAGGCCTGAGTCATGACCTTGATGACCAGGGTTTCA 1834
Query 1991 ATCCCGTTACTATCGTCCAGAACTTCGCCAATATGTCCGACCCGATGAAAGAGCTGGAGG 2050
|||| || || ||| ||||||| | |||| ||||| || |||||||||||||||||||
Sbjct 1835 ATCCGGTCACCATCACGCAGAACTACACCAACATGTCGGATCCGATGAAAGAGCTGGAGG 1894
Query 2051 CAGCGATTGAATCGGGACGCTTTCATCATGACGGCAATCCCATCATGACCTGGTGTATCG 2110
| ||||| || | || || || |||||||||||||| || |||||||||||||| |||
Sbjct 1895 CCGCGATAGAGGCTGGCCGTTTCCATCATGACGGCAACCCGATCATGACCTGGTGCGTCG 1954
Query 2111 GCAATGTGGTCGGCAAAAACATGCCAGGTAACGATGATTTAGTGAAGCCCG-TCAAAGAG 2169
|||| ||| ||||||| ||| |||| ||||||||||| | ||| ||||| ||||| ||
Sbjct 1955 GCAACGTGATCGGCAAGAACTTGCCCGGTAACGATGACATCGTG-CGCCCGATCAAACAG 2013
Query 2170 CAGGCG--GAAAACAAAATCGATGGTGCAGTTGCGCTGATTATGGCG 2214
|||| || ||||| ||||| || || || |||||||||||| ||
Sbjct 2014 --GGCGATGACAACAAGATCGACGGCGCTGTCGCGCTGATTATGACG 2058
>seq212862
Length=62768
Score = 271 bits (300), Expect = 2e-68
Identities = 464/666 (70%), Gaps = 9/666 (1%)
Strand=Plus/Plus
Query 18654 AACCATGCCGACGCTTACTGTTATAAAACATTTCGATGTAATCAAAAATATCACCGCGAG 18713
||||||| ||||| || ||| || ||||||||||||||||| || | ||| | ||||
Sbjct 59465 AACCATGTCGACGTTTTGAGTTGTAGAACATTTCGATGTAATCGAACACATCGCTACGAG 59524
Query 18714 CTTCTTCTCGCGTTCCGTAGATCTTTTTCTTTATCCGTTCACGTTTCAGTAGCTGGAAAA 18773
| ||||| || | ||| || || ||| |||||||| |||||||| ||||||||||
Sbjct 59525 CATCTTCCCGTCTGGTGTAAATTTTCCGCTTGATCCGTTCTCGTTTCAGAAGCTGGAAAA 59584
Query 18774 AACTTTCTGCGACTGCGTTGTCATGACAGTTACCGCGACGGCTCATACTGCCCTCCAGCC 18833
| || || || || ||||||||||||||||| || ||||| ||||| ||| | |||
Sbjct 59585 AGCTCTCGGCCACGGCGTTGTCATGACAGTTGCCTCGACGACTCATGCTGGCAACCAAAT 59644
Query 18834 CGTGTGATTTCAGGAACGACTGCCACTCATAGCTTGTGTACTGACTGCCTTGATCAGAAT 18893
|| || |||| || |||| || |||| ||||||| ||||| || || ||||
Sbjct 59645 TGTTTGCCTTCAAAAAGCTGCGCCAATCGGAGCTGCTGTACTGGCTGCCCTGGTCGGAAT 59704
Query 18894 GAACCAGCACCTGCTTTTGAGGATTACGTCGCCACACGGCCATCAGAAGTGCATTCAGGA 18953
|||||| ||||| | | || ||||| | ||| || ||||||| | |||| |
Sbjct 59705 GAACCATCACCTCTTGCTTCGGTTTACGCCTCCAAACCGCCATCAACAACGCATCAATAG 59764
Query 18954 CAATATCCTTTGTCATCCGGGGCTGCATTGACCAGCCAATAACTTTGCGCGAGAACAGGT 19013
| | ||| | |||||| | | || |||||||||||||| || | || || |||| |
Sbjct 59765 CCAAATCACTGGTCATCTGCGCCTTCATTGACCAGCCAACGACCTGACGAGAATACAGAT 59824
Query 19014 CAACAACCACAGCCAGATACAGCCAGCCTTCGTGAGTCCGGATGTAGGTGATGTCCGTTA 19073
| | ||||| |||| ||||| ||||||||| | || || |||||||||||||| ||||
Sbjct 59825 CCAGCACCACCGCCAAATACAACCAGCCTTCATACGTACGAATGTAGGTGATGTCGGTTA 59884
Query 19074 CCCAACGCTCATCCGGTGCTTCCGAGTTGAACTGCCGCTGGAGCCTGTTGGGCGTCACGA 19133
||||| || | ||| | | | |||||| |||| ||| ||||| | |||
Sbjct 59885 CCCAAACCTTGTTGGGTTCCACGACATCGAACTGGCGCTTCAGCAAATTGGGTGAGGCGA 59944
Query 19134 -TGCTGG-TTTCACCCTTACGTGCCCGTG-GGCTACGGTACCCGACCTGAGCCCTTATCC 19190
||||| || | || ||| | || | | ||| || || || ||||| | | ||
Sbjct 59945 CCGCTGGCTTACCGCCGTACTTTCCAGGGCGGCGTCGATAACCTGTCTGAGAGCGCAGCC 60004
Query 19191 CGGCACGCTTCATCAG--TCGCCAGAC-ACGGTTAACTCCGCACTGTTGTCCGGTATCCC 19247
| || | |||||| | |||| || | ||| ||||| || ||| || |
Sbjct 60005 CTTCAAGACGCATCAGCCTTGCCACACGAAGGT---GCCCGCAAACTTCACCGACCTCGC 60061
Query 19248 GCAGGTCGAGGTGGATCTTGCGATAACCATAAACGCAACCCGACTCCAGCCAGAACTGCT 19307
|||| ||| ||||| |||||||| |||||||||| || |||||||||| | ||||
Sbjct 60062 GCAGATCGTTATGGATTTTGCGATAGCCATAAACGCCGCCGCTCTCCAGCCAGGAATGCT 60121
Query 19308 TTATCA 19313
| ||||
Sbjct 60122 TGATCA 60127
>seq3087477
Length=5220
Score = 255 bits (282), Expect = 1e-63
Identities = 300/406 (74%), Gaps = 0/406 (0%)
Strand=Plus/Minus
Query 18673 GTTATAAAACATTTCGATGTAATCAAAAATATCACCGCGAGCTTCTTCTCGCGTTCCGTA 18732
||| |||||||| ||||||||||| || | |||| | ||||| || | || || |||
Sbjct 1757 GTTGTAAAACATCTCGATGTAATCGAACACATCATCTCGAGCATCCTGGCGTGTAGTGTA 1698
Query 18733 GATCTTTTTCTTTATCCGTTCACGTTTCAGTAGCTGGAAAAAACTTTCTGCGACTGCGTT 18792
||| || ||| |||||||| || ||||| | ||||||||| || || || || ||||
Sbjct 1697 GATTTTACGCTTGATCCGTTCCCGCTTCAGCAACTGGAAAAAGCTCTCCGCCACAGCGTC 1638
Query 18793 GTCATGACAGTTACCGCGACGGCTCATACTGCCCTCCAGCCCGTGTGATTTCAGGAACGA 18852
||| || || ||||| ||||| ||||| ||| | |||| || | ||||| |||
Sbjct 1637 GTCGTGGCAATTACCTCGACGACTCATGCTGGCTACCAGGTTGTTAGCTTTCAAGAAGCT 1578
Query 18853 CTGCCACTCATAGCTTGTGTACTGACTGCCTTGATCAGAATGAACCAGCACCTGCTTTTG 18912
|||| || |||| ||||||||||||||||||| || || | || ||||| | |
Sbjct 1577 TCGCCAGTCTGAGCTGCTGTACTGACTGCCTTGATCCGAGTGGATCATCACCTCTTGCTT 1518
Query 18913 AGGATTACGTCGCCACACGGCCATCAGAAGTGCATTCAGGACAATATCCTTTGTCATCCG 18972
|| ||||||| ||| || |||||||| ||||||| | | | | || | |||||| |
Sbjct 1517 CGGCTTACGTCTCCAAACCGCCATCAGCAGTGCATCAATGGCTACGTCGCTGGTCATCTG 1458
Query 18973 GGGCTGCATTGACCAGCCAATAACTTTGCGCGAGAACAGGTCAACAACCACAGCCAGATA 19032
| || ||||||||| ||||| | | ||| || ||||| || | ||||| |||| |||
Sbjct 1457 CGACTTCATTGACCAACCAATGATCTGGCGTGAAAACAGATCGAGCACCACGGCCAAATA 1398
Query 19033 CAGCCAGCCTTCGTGAGTCCGGATGTAGGTGATGTCCGTTACCCAA 19078
|||||||||||| | || ||||||||||| ||||| || ||||||
Sbjct 1397 CAGCCAGCCTTCATATGTTCGGATGTAGGTAATGTCTGTGACCCAA 1352
>seq3082850
Length=2593
Score = 80.6 bits (88), Expect = 7e-11
Identities = 86/114 (75%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 18710 CGAGCTTCTTCTCGCGTTCCGTAGATCTTTTTCTTTATCCGTTCACGTTTCAGTAGCTGG 18769
||||| |||| ||||| |||||| || | | ||| || | |||||||| ||||||
Sbjct 2348 CGAGCATCTTGTCGCGAGGTGTAGATTTTCCGCCTGATCTGTGCCCGTTTCAGAAGCTGG 2289
Query 18770 AAAAAACTTTCTGCGACTGCGTTGTCATGACAGTTACCGCGACGGCTCATACTG 18823
||||| || | || || ||||||| ||||||||| || || || ||||| |||
Sbjct 2288 AAAAAGCTCGCGGCCACGGCGTTGTTATGACAGTTGCCTCGGCGACTCATGCTG 2235
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 122442325037040
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