Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_022752.1 Length=42665 Score E Sequences producing significant alignments: (Bits) Value seq274481 84.2 6e-12 >seq274481 Length=3169 Score = 84.2 bits (92), Expect = 6e-12 Identities = 164/236 (69%), Gaps = 16/236 (7%) Strand=Plus/Minus Query 1190 GCTTACATCAACGGTGAATTTGTCAACCTGACATCCGGCAGTGTTTATTACGCTTACGAC 1249 || ||| |||||||| | || |||||||||||||| ||| | || || | |||||| Sbjct 1455 GCCTACCTCAACGGTCAGTTCGTCAACCTGACATCGGGCTCGATCTACCACTCGTACGAC 1396 Query 1250 CGGCGTAAGAACAG-CAGTCGG--GAGACTATACAACCAGGCGAAACGCTGTATATCGGT 1306 || ||| ||| |||| || ||| | || || |||||| | |||| |||||| Sbjct 1395 CGC---AAGCACAATCAGTGCTTCGACACTGTGCAGCCTGGCGAACCCCTGTTTATCGGG 1339 Query 1307 CAGGACTTCAACGTCGGGCATAT---GGCTAGCACCGTATACGTTCAGCGTGA--GTATG 1361 ||||||||||||||| | || ||||| |||| |||| |||| || || || Sbjct 1338 ATGGACTTCAACGTCGGCAAGATGGCGGCTATCACC---CACGTCAAGCGAGACGGTTTG 1282 Query 1362 TCTGGCACGCGGTAGCCGAGCTGGTGGATATGTTCGACACCCCAGATGTGGTCAGG 1417 | | |||| | ||||||||||||| | |||||| || ||| || ||||| Sbjct 1281 CC--CCGGGCGGCTGACGAGCTGGTGGATGGCTACGACACGCCGGATATGATCAGG 1228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 131403549580914