Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_022915.1 Length=40471 Score E Sequences producing significant alignments: (Bits) Value seq3085889 192 1e-44 >seq3085889 Length=3603 Score = 192 bits (212), Expect = 1e-44 Identities = 358/515 (70%), Gaps = 22/515 (4%) Strand=Plus/Minus Query 34752 TTGCCTTCCATTTCGTCTGCCGTTGGTTGGCTACCGACTTCGGGGAAAGCCTTGCGCAGA 34811 ||||||||||| ||||| |||||||| || || || ||||| || |||||||| Sbjct 1456 TTGCCTTCCATCTCGTCGGCCGTTGGCGCAGACCCAACCTCAGGGAATGCTTTGCGCAGG 1397 Query 34812 GCCTGTGCCTCGGCACACTTGGCGATCTGCCCATAAGGTCGCTTCTGCCACATGAGGTTG 34871 ||||| ||||| || || ||||||| ||| || | | ||| || |||||| |||| Sbjct 1396 GCCTGGGCCTCTGCGCATTTGGCGAGCTGGGCAAATGCTCGGCGCTTCCACATCGCGTTG 1337 Query 34872 GGGGCGATGCTTTTTTCTTTGCCACCCTTGACGGCGTAGTTCTCCTTCCAGAACTCGCTG 34931 || || | | | | |||| | || || ||||||| || |||| |||| || Sbjct 1336 GGCGCCGCGGTGT---CCTTGCT--CGATGTCG-CGTAGTTTTCAAGCCAGCGCTCGTTG 1283 Query 34932 GCCGTGAACTTC----ACGATGTCGCCTGATGGCATGCGTCGTGAGACGGTCACGCGACA 34987 |||||| | ||| || | | || || | ||| | || ||| |||||||| || Sbjct 1282 GCCGTGTA-TTCGGCAACCAGGCCGT-TGCT--CATCTGCCGCTTGACCGTCACGCGGCA 1227 Query 34988 CCATTGCGGAAACGTAATCTCGACACCGCCGATGACTTCG--GT--CTTGTCAGGGCCGA 35043 ||||| ||| |||| | ||||| |||| | ||||| || || | ||| || Sbjct 1226 CCATTCGGGATACGTGACTTCGACGCCGCTCAG--CTTCGCCGTTACTGG--AGGACCAT 1171 Query 35044 ACTCAGGCTCGGTGATGCCCGCGTATTCGCCCGTACGCGCTGCATCCGTGCGGTACAGAC 35103 | ||||||||| |||| || ||||| | ||| || || || || | |||||||||| | Sbjct 1170 ATTCAGGCTCGCTGATTCCGGCGTACTGGCCGGTGCGTGCCGCTTGAATGCGGTACAGGC 1111 Query 35104 CGATTCCGGGCATCACCACGTCACGCATTTGTCCAGTCTTGCTGTCCCACATTGGCACGA 35163 |||| || ||||||||| ||| |||||| | ||||| || ||| || || |||| Sbjct 1110 CGATGCCAGGCATCACCGTGTCCTGCATTTTTTTCGTCTTCGAGTTCCAGATCGGGACGA 1051 Query 35164 TGTGAACGGGCTTGCGCATCGGGTCAAGGCCCGCAGCCTTGCAGTAGCCCAGCACCATCT 35223 |||| || ||||| |||| ||||| ||| ||| |||| |||||| ||| ||||||| Sbjct 1050 TGTGCACCGGCTTCAGCATTGGGTCCAGGTGCGCGGCCTGGCAGTAAGCCAACACCATCA 991 Query 35224 TGATCGATTGGTGCGATGCGCCGGGGTAGAGGCTG 35258 || || | | |||||||||||||||||| Sbjct 990 CGACTGAGTTCTTTTCGGCGCCGGGGTAGAGGCTG 956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124640244920006