Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_022968.1 Length=148567 Score E Sequences producing significant alignments: (Bits) Value seq2958144 98.7 9e-16 seq302243 89.7 5e-13 >seq2958144 Length=471 Score = 98.7 bits (108), Expect = 9e-16 Identities = 197/285 (69%), Gaps = 8/285 (3%) Strand=Plus/Minus Query 101330 GTAGGTGGCGCAGTACGTGACGGTTTGCTTGGTCGTGAAGTTCAT-GACCGTGACTACGT 101388 || || ||||| || ||||| ||||||| || | | || ||| ||| ||| ||| Sbjct 410 GTTGGCGGCGCGGTGCGTGATCGTTTGCTCGG-CATCGAGGTCACCGACATCGACCGCGT 352 Query 101389 GGTTGTGGGTGCAACGCAC-GAAGAAATGATCAATAAAGGTTTCACCCAGGTTGGCGCTG 101447 |||||| || ||||| ||| ||||||||| || || || | || | ||| || |||| Sbjct 351 GGTTGTCGGCGCAAC-CACTGAAGAAATGCTCGCCAAGGGCTACAAGCCGGTGGGTGCTG 293 Query 101448 CTTTTCCAGTATACCTGCATCCTGAAACCAACGAAGAGTATGCTTTGGCCCGTACCGAGC 101507 || ||||| | |||| | || ||| | ||| ||||| || ||||||| ||||||| Sbjct 292 ACTTCCCAGTGTTCCTGGACCCGAAAAACGGCGACGAGTACGCCCTGGCCCGCACCGAGC 233 Query 101508 GCAAGACGGGCAACGGTCATACAGACTT--CGAAACATTCTTCAGCCCGGACGTGACTTT 101565 |||||| ||| ||| || | ||| | ||| | |||||| || || || | Sbjct 232 GCAAGAGTGGCCGTGGTTATGGCGGCTTTGTGTTTCATGC--CAGCCCCGAGGTCACACT 175 Query 101566 GGTTGAGGATTTGTCTCGTAGAGACCTGACGATCAACGCTATGGC 101610 || || || || |||| | || ||||| |||||||| ||||| Sbjct 174 GGAAGAAGACCTGATTCGTCGCGATCTGACCATCAACGCGATGGC 130 >seq302243 Length=1145 Score = 89.7 bits (98), Expect = 5e-13 Identities = 195/285 (68%), Gaps = 8/285 (3%) Strand=Plus/Plus Query 101330 GTAGGTGGCGCAGTACGTGACGGTTTGCTTGGTCGTGAAGTTCAT-GACCGTGACTACGT 101388 || || ||||| || ||||| || |||| || | | || ||| ||| ||| ||| Sbjct 56 GTCGGCGGCGCGGTGCGTGATCGTCTGCTCGG-CATCGAGGTCACCGACATCGACCGCGT 114 Query 101389 GGTTGTGGGTGCAACGCAC-GAAGAAATGATCAATAAAGGTTTCACCCAGGTTGGCGCTG 101447 ||| || || ||||| ||| ||||||||| || || || | || | ||| || |||| Sbjct 115 GGTCGTCGGCGCAAC-CACTGAAGAAATGCTCGCCAAGGGCTACAAGCCGGTGGGTGCTG 173 Query 101448 CTTTTCCAGTATACCTGCATCCTGAAACCAACGAAGAGTATGCTTTGGCCCGTACCGAGC 101507 || || |||| |||| || ||| | ||| ||||| || ||||||| ||||||| Sbjct 174 ACTTCCCGGTATTCCTGGCCCCGAAAAACGGCGATGAGTACGCCCTGGCCCGCACCGAGC 233 Query 101508 GCAAGACGGGCAACGGTCATACAGACTT--CGAAACATTCTTCAGCCCGGACGTGACTTT 101565 |||||| ||| ||| || | ||| | ||| | |||||| || || || | Sbjct 234 GCAAGAGTGGCCGGGGTTATGGCGGCTTTGTGTTTCATGC--CAGCCCCGAGGTCACGCT 291 Query 101566 GGTTGAGGATTTGTCTCGTAGAGACCTGACGATCAACGCTATGGC 101610 || || || || |||| | |||||||| |||||||| ||||| Sbjct 292 GGAAGAAGACCTGATTCGTCGCGACCTGACCATCAACGCCATGGC 336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 456937309068120