Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_022968.1
Length=148567
Score E
Sequences producing significant alignments: (Bits) Value
seq2958144 98.7 9e-16
seq302243 89.7 5e-13
>seq2958144
Length=471
Score = 98.7 bits (108), Expect = 9e-16
Identities = 197/285 (69%), Gaps = 8/285 (3%)
Strand=Plus/Minus
Query 101330 GTAGGTGGCGCAGTACGTGACGGTTTGCTTGGTCGTGAAGTTCAT-GACCGTGACTACGT 101388
|| || ||||| || ||||| ||||||| || | | || ||| ||| ||| |||
Sbjct 410 GTTGGCGGCGCGGTGCGTGATCGTTTGCTCGG-CATCGAGGTCACCGACATCGACCGCGT 352
Query 101389 GGTTGTGGGTGCAACGCAC-GAAGAAATGATCAATAAAGGTTTCACCCAGGTTGGCGCTG 101447
|||||| || ||||| ||| ||||||||| || || || | || | ||| || ||||
Sbjct 351 GGTTGTCGGCGCAAC-CACTGAAGAAATGCTCGCCAAGGGCTACAAGCCGGTGGGTGCTG 293
Query 101448 CTTTTCCAGTATACCTGCATCCTGAAACCAACGAAGAGTATGCTTTGGCCCGTACCGAGC 101507
|| ||||| | |||| | || ||| | ||| ||||| || ||||||| |||||||
Sbjct 292 ACTTCCCAGTGTTCCTGGACCCGAAAAACGGCGACGAGTACGCCCTGGCCCGCACCGAGC 233
Query 101508 GCAAGACGGGCAACGGTCATACAGACTT--CGAAACATTCTTCAGCCCGGACGTGACTTT 101565
|||||| ||| ||| || | ||| | ||| | |||||| || || || |
Sbjct 232 GCAAGAGTGGCCGTGGTTATGGCGGCTTTGTGTTTCATGC--CAGCCCCGAGGTCACACT 175
Query 101566 GGTTGAGGATTTGTCTCGTAGAGACCTGACGATCAACGCTATGGC 101610
|| || || || |||| | || ||||| |||||||| |||||
Sbjct 174 GGAAGAAGACCTGATTCGTCGCGATCTGACCATCAACGCGATGGC 130
>seq302243
Length=1145
Score = 89.7 bits (98), Expect = 5e-13
Identities = 195/285 (68%), Gaps = 8/285 (3%)
Strand=Plus/Plus
Query 101330 GTAGGTGGCGCAGTACGTGACGGTTTGCTTGGTCGTGAAGTTCAT-GACCGTGACTACGT 101388
|| || ||||| || ||||| || |||| || | | || ||| ||| ||| |||
Sbjct 56 GTCGGCGGCGCGGTGCGTGATCGTCTGCTCGG-CATCGAGGTCACCGACATCGACCGCGT 114
Query 101389 GGTTGTGGGTGCAACGCAC-GAAGAAATGATCAATAAAGGTTTCACCCAGGTTGGCGCTG 101447
||| || || ||||| ||| ||||||||| || || || | || | ||| || ||||
Sbjct 115 GGTCGTCGGCGCAAC-CACTGAAGAAATGCTCGCCAAGGGCTACAAGCCGGTGGGTGCTG 173
Query 101448 CTTTTCCAGTATACCTGCATCCTGAAACCAACGAAGAGTATGCTTTGGCCCGTACCGAGC 101507
|| || |||| |||| || ||| | ||| ||||| || ||||||| |||||||
Sbjct 174 ACTTCCCGGTATTCCTGGCCCCGAAAAACGGCGATGAGTACGCCCTGGCCCGCACCGAGC 233
Query 101508 GCAAGACGGGCAACGGTCATACAGACTT--CGAAACATTCTTCAGCCCGGACGTGACTTT 101565
|||||| ||| ||| || | ||| | ||| | |||||| || || || |
Sbjct 234 GCAAGAGTGGCCGGGGTTATGGCGGCTTTGTGTTTCATGC--CAGCCCCGAGGTCACGCT 291
Query 101566 GGTTGAGGATTTGTCTCGTAGAGACCTGACGATCAACGCTATGGC 101610
|| || || || |||| | |||||||| |||||||| |||||
Sbjct 292 GGAAGAAGACCTGATTCGTCGCGACCTGACCATCAACGCCATGGC 336
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 456937309068120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |