Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_022981.1 Length=76323 Score E Sequences producing significant alignments: (Bits) Value seq2830298 123 1e-23 seq2744214 93.3 2e-14 >seq2830298 Length=253 Score = 123 bits (136), Expect = 1e-23 Identities = 181/254 (71%), Gaps = 4/254 (2%) Strand=Plus/Plus Query 66496 CGCCTACATCGACGCTGAGCACTCCCTGGACCCTGAGTACGCCAAGGCG--CTCGGTGTG 66553 ||| | | ||||||| |||||| ||||||| ||||| |||||| ||| || || || Sbjct 1 CGCGTTCGTCGACGCCGAGCACGCCCTGGATCCTGAATACGCC--GGCAAACTGGGCGTC 58 Query 66554 GACCTCGACAACCTCGTGGTGGTTCAGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTT 66613 || | ||| |||| |||| ||||||||||| || ||||| ||||| || ||| Sbjct 59 AACGTTGACGACCTGCTGGTTTCGCAGCCGGACACCGGTGAGCAAGCCCTCGAAATCACC 118 Query 66614 GACCTCCTCGTCAAGTCTGGCGAGCTGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTG 66673 ||| | || || || || | | | |||| || ||||| |||||||| ||| Sbjct 119 GACATGCTGGTGCGTTCCAACGCCATCGACGTGATCGTGGTCGACTCCGTGGCGGCGCTG 178 Query 66674 GTGCCGCGCGCCGAGCTCGAAGGCGACATCGGGGACAGTCACGTCGGCCTGCACGCGCGC 66733 || ||| || || |||||||||| || || |||| ||||| |||||||| || ||| Sbjct 179 GTACCGAAGGCAGAAATCGAAGGCGAAATGGGCGACATGCACGTGGGCCTGCAAGCCCGC 238 Query 66734 CTCATGTCGCAGGC 66747 || ||||| ||||| Sbjct 239 CTGATGTCCCAGGC 252 >seq2744214 Length=211 Score = 93.3 bits (102), Expect = 2e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 66348 CCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGAGGGGCCGGG 66407 |||| |||||| | | ||||||| ||| || ||||| || || || | ||||| Sbjct 3 CCACTGGCTCTCTGGGTCTGGACATCGCACTCGGCATTGGCGGCCTGCCAAAAGGCCGTA 62 Query 66408 TGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTGTGTCTCCACGCGGTGG 66467 | || ||||||||||| || |||||||| || || | |||||| ||| | | | | Sbjct 63 TTGTCGAAATCTACGGTCCTGAATCTTCCGGTAAAACTACTCTGACTCTGTCGGTGATTG 122 Query 66468 CCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACTCCCTGGACC 66527 || | ||||| || || | || | ||| | | ||||||| |||||| ||||||| | Sbjct 123 CCCAGGCGCAAAAAATGGGCGCCACCTGCGCGTTCGTCGACGCCGAGCACGCCCTGGATC 182 Query 66528 CTGAGTACGCC 66538 |||| |||||| Sbjct 183 CTGAATACGCC 193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 234920245048164