Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_023006.1 Length=43564 Score E Sequences producing significant alignments: (Bits) Value seq310551 165 2e-36 seq2951953 138 3e-28 seq2948836 123 7e-24 seq2799564 123 7e-24 seq3088487 114 3e-21 seq2966539 109 1e-19 seq2787928 102 2e-17 seq610375 100 8e-17 seq2099341 86.0 2e-12 seq391464 86.0 2e-12 seq2907691 84.2 6e-12 seq2099342 82.4 2e-11 >seq310551 Length=517 Score = 165 bits (182), Expect = 2e-36 Identities = 251/351 (72%), Gaps = 10/351 (3%) Strand=Plus/Plus Query 37168 CTGGTTACCCGCAAAGGTGCTGTTCGGGCCCGCGAGGGCGACCTGGGCATCATCCCTGGC 37227 ||||| || |||||||| || || ||| ||||||| ||||| || || || || Sbjct 6 CTGGTGACGCGCAAAGGCGCGGTGTCGGCGAAAAAGGGCGAGCTGGGGATTATTCCGGGT 65 Query 37228 TCGATGGGTGCGAAGTCATTCATCGTTCGCGGCAAGGGAAATTCCGAATCGTTCTGCTCT 37287 || ||||| || || |||||||| |||||| ||| || || ||||||||||| Sbjct 66 TCCATGGGCGCAAAAAGTTTCATCGTGCGCGGCCTGGGCAACGAAGAGTCGTTCTGCTCG 125 Query 37288 TGCAGCCACGGTGCCGGTCGAATGATGAGCCGGGCCGAAGC--AAAACGCCGGTTCACAG 37345 ||||||||||| ||||| || | |||||||| || |||| ||||| || ||||| | Sbjct 126 TGCAGCCACGGCGCCGGCCGCACCATGAGCCGCACCAAAGCGAAAAACACC--TTCACGG 183 Query 37346 TCGAGGATCATGAGGCG-GCCAC--CAAAGGTATCGAGTGCCGCAAAGATGCCGAAGTGA 37402 | | || || || || ||||| | | | | ||||||||||| || ||||| |||| Sbjct 184 TGGCCGACCA-GATCCGCGCCACGGCCCACG--TGGAGTGCCGCAAGGACGCCGATGTGA 240 Query 37403 TCGACGAGACGCCAGCGGCTTACAAGGACATCGATGCGGTCATGGCCGCGCAATCCGCCC 37462 |||| || | || ||| |||||||||||||| || |||||| || || || | Sbjct 241 TCGATGAAATTCCGATGGCCTACAAGGACATCGACGCCGTCATGCATGCCCAGCGCGAGC 300 Query 37463 TGGTGGACATCGTGCACACGCTGCGCCAAGTCGTTTGCGTGAAGGGTTGAG 37513 |||| || | ||||||| ||||| || || || ||||| || |||| || Sbjct 301 TGGTTGAAGTGCTGCACACCCTGCGTCAGGTGGTGTGCGTAAAAGGTTAAG 351 >seq2951953 Length=451 Score = 138 bits (152), Expect = 3e-28 Identities = 176/241 (73%), Gaps = 6/241 (2%) Strand=Plus/Plus Query 23450 TGTCCACCACAATTTCGGTGGTGTAG---TTGGTCGCGCCGTCTTTTTCCCACTTGCGTG 23506 |||| || || ||||| |||||||| ||| | ||||||||||||||||| ||| | Sbjct 213 TGTCGACTACGATTTCAGTGGTGTAACGCTTGAT---GCCGTCTTTTTCCCACTCGCGGG 269 Query 23507 TCTGCAGCTTGCCGATGATCGCGCATTCACTTCCCTTGCGCAGATACTCGCCGGCAATCT 23566 | ||||||||||| ||| | | || |||||||| ||||| || || |||| Sbjct 270 TTTGCAGCTTGCCTTCGATGTAGACCTGCGAACCTTTGCGCAGGTACTCACCAGCGATCT 329 Query 23567 CGGCGACCTTGCCGAAGAACACGACGCGGTGCCATTCGGTCTTTTCCTTGCGCTCGCCGG 23626 | || ||||||||||| ||| ||||||||||| ||||| || || ||||||||| || Sbjct 330 CTGCAACCTTGCCGAACAACGACACGCGGTGCCACTCGGTTTTCTCTTTGCGCTCGTTGG 389 Query 23627 TCTGCTTGTCCTTCCAGGTTTCCGACGTGGCCAGGCTGATGTTGCAGACGGCATCGCCGT 23686 |||||||||| |||| ||| || ||||| || | |||| ||||| | |||| Sbjct 390 TCTGCTTGTCGGTCCACTGTTCGCTGGTCGCCAGACTCAGGTTGGTCACGGCGTTACCGT 449 Query 23687 T 23687 | Sbjct 450 T 450 >seq2948836 Length=441 Score = 123 bits (136), Expect = 7e-24 Identities = 145/196 (74%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 15082 CGGCTTCTGGTGGTCGCCGTCCAACCAGAACATCAACGGCATCACTGGCACCAGCCGGCC 15141 |||||||||| |||||||| ||| | | ||| ||| ||||||| || | ||| | Sbjct 298 CGGCTTCTGGGCTTCGCCGTCTAACAAAGAGTTCACCGGTCTCACTGGTACGACCCGAGC 239 Query 15142 TATCGACTTCACGCTGGGCGATTCCAGCTCGCGCGCCAACCTGCTGAACGAAGCAAAGGT 15201 | |||| | | | ||||| | | || ||||||||||||||| | || || | Sbjct 238 TGTCGAGTACCTGGACGGCGACGAGACGTGCCGGGCCAACCTGCTGAACAACGCCAACAT 179 Query 15202 GGCGACCATCATTCGCGAGGACGGTTTCCGCCTGTGGGGCAACCGCACCCTGTCGAGCGA 15261 ||||| ||||||||||| ||||| | ||| ||||||| |||||||| ||||||||||| Sbjct 178 CGCGACGATCATTCGCGACGACGGCTATCGCTTGTGGGGGAACCGCACGCTGTCGAGCGA 119 Query 15262 TCAAAAGTGGGCGTTC 15277 || |||||||| ||| Sbjct 118 TCCGAAGTGGGCATTC 103 >seq2799564 Length=235 Score = 123 bits (136), Expect = 7e-24 Identities = 165/226 (73%), Gaps = 20/226 (9%) Strand=Plus/Minus Query 23484 GCCGTCTTTTTCCCACTTGCGTGTCTGCAGCTTGCC---GATG---ATC-GCGCATTCAC 23536 ||||||||||||||||| ||| || ||||| ||||| |||| | | ||| | Sbjct 217 GCCGTCTTTTTCCCACTCGCGGGTTTGCAGTTTGCCTTCGATGTAAACCTGCGAA----- 163 Query 23537 TTCCCTTGCGCAGATACTCGCCGGCAATCTCGGCGACCTTGCCGAAGAACACGACGCGGT 23596 || |||||||| ||||||||||| ||||| || ||||||||||| | | ||||||| Sbjct 162 --CCTTTGCGCAGGTACTCGCCGGCGATCTCTGCAACCTTGCCGAACATCGACACGCGGT 105 Query 23597 GCCATTCGGTCTTTTC---CTTGCGCTCGCCGGTCTGCTTGTCCTTCCAGGTTTCCGACG 23653 |||||||||| || || ||| || ||||||||||||||| |||| ||| | Sbjct 104 GCCATTCGGTTTTCTCGACCTT---CTGGCCGGTCTGCTTGTCAGTCCACTGTTCGCTGG 48 Query 23654 TGGCCAGGCTGATGTTGCAGACGGCATCGCCGTTTTGCAGGTAGCG 23699 | ||||| || | |||| ||||| | ||||| ||| |||||| Sbjct 47 TCGCCAGACTCAGGTTGGTCACGGCGTTACCGTTAGGCAAGTAGCG 2 >seq3088487 Length=16894 Score = 114 bits (126), Expect = 3e-21 Identities = 343/520 (66%), Gaps = 27/520 (5%) Strand=Plus/Minus Query 14908 CGATGGCCCGAACACTGTTGACGCTGACGCCATCGCCTACGCCGGCGACTTCGGCAGCCC 14967 ||| || |||||||| ||| | | |||||| ||| ||||| || ||||||||| Sbjct 10043 CGACGGGCCGAACACAACTGATGAAGCCGCCATGGCCCACGCCCAGGAGTTCGGCAGCAA 9984 Query 14968 GCGCGTCTACCTGGTTGACCCCAAGGTGCTGAAGACCGACA-GC--GAAGGCGAAACCGT 15024 ||| |||||||||||| || || | | | |||| || || || ||||| | Sbjct 9983 ACGCTGCTACCTGGTTGATCCGGGCGTCCAGTTGTGGGACACGCTGGAGAGCAAAACCAT 9924 Query 15025 CACCGAGTGGTCCAGCCCATGCGTT----GCCGGCCTGCTGGCCAAGTCGGACAACGAAC 15080 | || || || ||| ||||| || ||| | | ||| | | || || Sbjct 9923 C---GA-TGCACCGGCCTCGGCGTTCGTGGCTGGCTTATTCGCCTGGACCGATGCGGAGT 9868 Query 15081 GCGGCTTCTGGTGGTCGCCGTCCAACCAGAACATCAACGGCATCACTGGCACCAGCCGGC 15140 ||| ||||||| ||||||||| ||| | | | ||||||||| || ||| || | Sbjct 9867 ACGGGTTCTGGTCGTCGCCGTCAAACAAAGAGTTTGTCGGCATCACCGGGACCTCGCGCC 9808 Query 15141 CTATCGACTTCACGC-TGGG--CGATTCCAGCTCGCGCGCCAACCTGCTGAACGAAGCAA 15197 | | || ||| | |||| ||| || || || |||||||| || ||| | |||| Sbjct 9807 CGGTGGAGTTCCTGGATGGGGACGAAACCTGC---CGGGCCAACCTCCTCAACAACGCAA 9751 Query 15198 AGGTGGCGACCATCATTCGCGAGGACGGTTTCCGCCTGTGGGGCAACCGCACCCTGTCGA 15257 | | | |||||||| ||||| | ||||| ||||||||||||||||| || ||||| Sbjct 9750 ACATCACCACCATCATCCGCGACGGCGGTTATCGCCTGTGGGGCAACCGTACGCTGTCCT 9691 Query 15258 GCGATCAAAAGTGGGCGTTCCTGT-----GCGTGCGCCGCACCGCCGACATCATCAACGA 15312 |||| |||||||| || ||| ||||| ||||||| || ||| ||| || Sbjct 9690 CGGATCCGAAGTGGGCATT--TGTCACCCGCGTG---CGCACCGTGGATATCGTCATGGA 9636 Query 15313 CAGCATCCTGGTGAACCACCTGTGGGCCGTGGATCGCGGCATCACCAAGCAGTACATCGA 15372 | ||||| | ||| ||||| || || || |||||||||||| |||||| | Sbjct 9635 CGCGATCCTCGCCGGACACAAATGGGCAGTCGACCGTGGCATCACCAAGACCTACATCAA 9576 Query 15373 AGACGTGGTGGAAGGCGTGAACGCCTACCTGCGCCACCTG 15412 || ||| || ||| || | || | | ||| ||||| Sbjct 9575 GGATGTGACCGACGGCCTGCAGGCGTTCATGCAGGACCTG 9536 >seq2966539 Length=502 Score = 109 bits (120), Expect = 1e-19 Identities = 87/105 (83%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 15173 CGCGCCAACCTGCTGAACGAAGCAAAGGTGGCGACCATCATTCGCGAGGACGGTTTCCGC 15232 || ||||||||||||||| | || || | ||||| ||||||||||| ||||| | |||| Sbjct 378 CGTGCCAACCTGCTGAACAACGCCAATATCGCGACGATCATTCGCGATGACGGCTACCGC 437 Query 15233 CTGTGGGGCAACCGCACCCTGTCGAGCGATCAAAAGTGGGCGTTC 15277 |||||||||||||||| || ||||| |||| |||||||| ||| Sbjct 438 TTGTGGGGCAACCGCACGCTTTCGAGTGATCCGAAGTGGGCATTC 482 >seq2787928 Length=229 Score = 102 bits (112), Expect = 2e-17 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 15173 CGCGCCAACCTGCTGAACGAAGCAAAGGTGGCGACCATCATTCGCGAGGACGGTTTCCGC 15232 || ||||||||||||||| | || || | ||||| ||||| ||||| ||||| | ||| Sbjct 23 CGGGCCAACCTGCTGAACAACGCCAATATCGCGACGATCATCCGCGACGACGGCTATCGC 82 Query 15233 CTGTGGGGCAACCGCACCCTGTCGAGCGATCAAAAGTGGGCGTT 15276 ||||||| |||||||| ||||||||||||| |||||||| || Sbjct 83 TTGTGGGGTAACCGCACGCTGTCGAGCGATCCGAAGTGGGCTTT 126 >seq610375 Length=104 Score = 100 bits (110), Expect = 8e-17 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 21062 ATGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATC 21121 |||||| |||| ||||| ||||||||| |||| | ||||||||||||| |||||||||| Sbjct 80 ATGGCGCACCCGGCAGGACTCGAACCTGCGACCATCCGCTTAGAAGGCGGATGCTCTATC 21 Query 21122 CAGCTGAGCTACGGG 21136 ||||||||||||||| Sbjct 20 CAGCTGAGCTACGGG 6 >seq2099341 Length=127 Score = 86.0 bits (94), Expect = 2e-12 Identities = 84/107 (79%), Gaps = 6/107 (6%) Strand=Plus/Minus Query 23539 CCCTTGCGCAGATACTCGCCGGCAATCTCGGCGACCTTGCCGAAGAACACGACGCGGTGC 23598 || |||||||| ||||| ||||| |||||||| || |||||||| | | ||||||||| Sbjct 121 CCTTTGCGCAGGTACTCACCGGCGATCTCGGCCACTTTGCCGAACATCGACACGCGGTGC 62 Query 23599 CATTCGGTCTTTTC---CTTGCGCTCGCCGGTCTGCTTGTCCTTCCA 23642 |||||||| || || ||| || ||| ||||||||||| |||| Sbjct 61 CATTCGGTTTTCTCGACCTT---CTGGCCAGTCTGCTTGTCGGTCCA 18 >seq391464 Length=100 Score = 86.0 bits (94), Expect = 2e-12 Identities = 60/66 (91%), Gaps = 2/66 (3%) Strand=Plus/Minus Query 21081 TCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATCCAGCTGAGCTACGGG-GCC 21139 ||||||||| |||| | ||||||||||||| ||||||||||||||||||||||||| ||| Sbjct 98 TCGAACCTGCGACCATCCGCTTAGAAGGCGGATGCTCTATCCAGCTGAGCTACGGGCGCC 39 Query 21140 -GATTA 21144 ||||| Sbjct 38 TGATTA 33 >seq2907691 Length=344 Score = 84.2 bits (92), Expect = 6e-12 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 21081 TCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATCCAGCTGAGCTACGGG 21136 ||||||||| |||| | ||||||||||||| ||||||||||||||||||||||||| Sbjct 342 TCGAACCTGCGACCATCCGCTTAGAAGGCGGATGCTCTATCCAGCTGAGCTACGGG 287 >seq2099342 Length=127 Score = 82.4 bits (90), Expect = 2e-11 Identities = 83/107 (78%), Gaps = 6/107 (6%) Strand=Plus/Minus Query 23539 CCCTTGCGCAGATACTCGCCGGCAATCTCGGCGACCTTGCCGAAGAACACGACGCGGTGC 23598 || |||||||| ||||| ||||| |||||||| || |||||||| | | |||||| || Sbjct 121 CCTTTGCGCAGGTACTCACCGGCGATCTCGGCCACTTTGCCGAACATCGACACGCGGGGC 62 Query 23599 CATTCGGTCTTTTC---CTTGCGCTCGCCGGTCTGCTTGTCCTTCCA 23642 |||||||| || || ||| || ||| ||||||||||| |||| Sbjct 61 CATTCGGTTTTCTCGACCTT---CTGGCCAGTCTGCTTGTCGGTCCA 18 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134174839868132