Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_023006.1
Length=43564
Score E
Sequences producing significant alignments: (Bits) Value
seq310551 165 2e-36
seq2951953 138 3e-28
seq2948836 123 7e-24
seq2799564 123 7e-24
seq3088487 114 3e-21
seq2966539 109 1e-19
seq2787928 102 2e-17
seq610375 100 8e-17
seq2099341 86.0 2e-12
seq391464 86.0 2e-12
seq2907691 84.2 6e-12
seq2099342 82.4 2e-11
>seq310551
Length=517
Score = 165 bits (182), Expect = 2e-36
Identities = 251/351 (72%), Gaps = 10/351 (3%)
Strand=Plus/Plus
Query 37168 CTGGTTACCCGCAAAGGTGCTGTTCGGGCCCGCGAGGGCGACCTGGGCATCATCCCTGGC 37227
||||| || |||||||| || || ||| ||||||| ||||| || || || ||
Sbjct 6 CTGGTGACGCGCAAAGGCGCGGTGTCGGCGAAAAAGGGCGAGCTGGGGATTATTCCGGGT 65
Query 37228 TCGATGGGTGCGAAGTCATTCATCGTTCGCGGCAAGGGAAATTCCGAATCGTTCTGCTCT 37287
|| ||||| || || |||||||| |||||| ||| || || |||||||||||
Sbjct 66 TCCATGGGCGCAAAAAGTTTCATCGTGCGCGGCCTGGGCAACGAAGAGTCGTTCTGCTCG 125
Query 37288 TGCAGCCACGGTGCCGGTCGAATGATGAGCCGGGCCGAAGC--AAAACGCCGGTTCACAG 37345
||||||||||| ||||| || | |||||||| || |||| ||||| || ||||| |
Sbjct 126 TGCAGCCACGGCGCCGGCCGCACCATGAGCCGCACCAAAGCGAAAAACACC--TTCACGG 183
Query 37346 TCGAGGATCATGAGGCG-GCCAC--CAAAGGTATCGAGTGCCGCAAAGATGCCGAAGTGA 37402
| | || || || || ||||| | | | | ||||||||||| || ||||| ||||
Sbjct 184 TGGCCGACCA-GATCCGCGCCACGGCCCACG--TGGAGTGCCGCAAGGACGCCGATGTGA 240
Query 37403 TCGACGAGACGCCAGCGGCTTACAAGGACATCGATGCGGTCATGGCCGCGCAATCCGCCC 37462
|||| || | || ||| |||||||||||||| || |||||| || || || |
Sbjct 241 TCGATGAAATTCCGATGGCCTACAAGGACATCGACGCCGTCATGCATGCCCAGCGCGAGC 300
Query 37463 TGGTGGACATCGTGCACACGCTGCGCCAAGTCGTTTGCGTGAAGGGTTGAG 37513
|||| || | ||||||| ||||| || || || ||||| || |||| ||
Sbjct 301 TGGTTGAAGTGCTGCACACCCTGCGTCAGGTGGTGTGCGTAAAAGGTTAAG 351
>seq2951953
Length=451
Score = 138 bits (152), Expect = 3e-28
Identities = 176/241 (73%), Gaps = 6/241 (2%)
Strand=Plus/Plus
Query 23450 TGTCCACCACAATTTCGGTGGTGTAG---TTGGTCGCGCCGTCTTTTTCCCACTTGCGTG 23506
|||| || || ||||| |||||||| ||| | ||||||||||||||||| ||| |
Sbjct 213 TGTCGACTACGATTTCAGTGGTGTAACGCTTGAT---GCCGTCTTTTTCCCACTCGCGGG 269
Query 23507 TCTGCAGCTTGCCGATGATCGCGCATTCACTTCCCTTGCGCAGATACTCGCCGGCAATCT 23566
| ||||||||||| ||| | | || |||||||| ||||| || || ||||
Sbjct 270 TTTGCAGCTTGCCTTCGATGTAGACCTGCGAACCTTTGCGCAGGTACTCACCAGCGATCT 329
Query 23567 CGGCGACCTTGCCGAAGAACACGACGCGGTGCCATTCGGTCTTTTCCTTGCGCTCGCCGG 23626
| || ||||||||||| ||| ||||||||||| ||||| || || ||||||||| ||
Sbjct 330 CTGCAACCTTGCCGAACAACGACACGCGGTGCCACTCGGTTTTCTCTTTGCGCTCGTTGG 389
Query 23627 TCTGCTTGTCCTTCCAGGTTTCCGACGTGGCCAGGCTGATGTTGCAGACGGCATCGCCGT 23686
|||||||||| |||| ||| || ||||| || | |||| ||||| | ||||
Sbjct 390 TCTGCTTGTCGGTCCACTGTTCGCTGGTCGCCAGACTCAGGTTGGTCACGGCGTTACCGT 449
Query 23687 T 23687
|
Sbjct 450 T 450
>seq2948836
Length=441
Score = 123 bits (136), Expect = 7e-24
Identities = 145/196 (74%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 15082 CGGCTTCTGGTGGTCGCCGTCCAACCAGAACATCAACGGCATCACTGGCACCAGCCGGCC 15141
|||||||||| |||||||| ||| | | ||| ||| ||||||| || | ||| |
Sbjct 298 CGGCTTCTGGGCTTCGCCGTCTAACAAAGAGTTCACCGGTCTCACTGGTACGACCCGAGC 239
Query 15142 TATCGACTTCACGCTGGGCGATTCCAGCTCGCGCGCCAACCTGCTGAACGAAGCAAAGGT 15201
| |||| | | | ||||| | | || ||||||||||||||| | || || |
Sbjct 238 TGTCGAGTACCTGGACGGCGACGAGACGTGCCGGGCCAACCTGCTGAACAACGCCAACAT 179
Query 15202 GGCGACCATCATTCGCGAGGACGGTTTCCGCCTGTGGGGCAACCGCACCCTGTCGAGCGA 15261
||||| ||||||||||| ||||| | ||| ||||||| |||||||| |||||||||||
Sbjct 178 CGCGACGATCATTCGCGACGACGGCTATCGCTTGTGGGGGAACCGCACGCTGTCGAGCGA 119
Query 15262 TCAAAAGTGGGCGTTC 15277
|| |||||||| |||
Sbjct 118 TCCGAAGTGGGCATTC 103
>seq2799564
Length=235
Score = 123 bits (136), Expect = 7e-24
Identities = 165/226 (73%), Gaps = 20/226 (9%)
Strand=Plus/Minus
Query 23484 GCCGTCTTTTTCCCACTTGCGTGTCTGCAGCTTGCC---GATG---ATC-GCGCATTCAC 23536
||||||||||||||||| ||| || ||||| ||||| |||| | | ||| |
Sbjct 217 GCCGTCTTTTTCCCACTCGCGGGTTTGCAGTTTGCCTTCGATGTAAACCTGCGAA----- 163
Query 23537 TTCCCTTGCGCAGATACTCGCCGGCAATCTCGGCGACCTTGCCGAAGAACACGACGCGGT 23596
|| |||||||| ||||||||||| ||||| || ||||||||||| | | |||||||
Sbjct 162 --CCTTTGCGCAGGTACTCGCCGGCGATCTCTGCAACCTTGCCGAACATCGACACGCGGT 105
Query 23597 GCCATTCGGTCTTTTC---CTTGCGCTCGCCGGTCTGCTTGTCCTTCCAGGTTTCCGACG 23653
|||||||||| || || ||| || ||||||||||||||| |||| ||| |
Sbjct 104 GCCATTCGGTTTTCTCGACCTT---CTGGCCGGTCTGCTTGTCAGTCCACTGTTCGCTGG 48
Query 23654 TGGCCAGGCTGATGTTGCAGACGGCATCGCCGTTTTGCAGGTAGCG 23699
| ||||| || | |||| ||||| | ||||| ||| ||||||
Sbjct 47 TCGCCAGACTCAGGTTGGTCACGGCGTTACCGTTAGGCAAGTAGCG 2
>seq3088487
Length=16894
Score = 114 bits (126), Expect = 3e-21
Identities = 343/520 (66%), Gaps = 27/520 (5%)
Strand=Plus/Minus
Query 14908 CGATGGCCCGAACACTGTTGACGCTGACGCCATCGCCTACGCCGGCGACTTCGGCAGCCC 14967
||| || |||||||| ||| | | |||||| ||| ||||| || |||||||||
Sbjct 10043 CGACGGGCCGAACACAACTGATGAAGCCGCCATGGCCCACGCCCAGGAGTTCGGCAGCAA 9984
Query 14968 GCGCGTCTACCTGGTTGACCCCAAGGTGCTGAAGACCGACA-GC--GAAGGCGAAACCGT 15024
||| |||||||||||| || || | | | |||| || || || ||||| |
Sbjct 9983 ACGCTGCTACCTGGTTGATCCGGGCGTCCAGTTGTGGGACACGCTGGAGAGCAAAACCAT 9924
Query 15025 CACCGAGTGGTCCAGCCCATGCGTT----GCCGGCCTGCTGGCCAAGTCGGACAACGAAC 15080
| || || || ||| ||||| || ||| | | ||| | | || ||
Sbjct 9923 C---GA-TGCACCGGCCTCGGCGTTCGTGGCTGGCTTATTCGCCTGGACCGATGCGGAGT 9868
Query 15081 GCGGCTTCTGGTGGTCGCCGTCCAACCAGAACATCAACGGCATCACTGGCACCAGCCGGC 15140
||| ||||||| ||||||||| ||| | | | ||||||||| || ||| || |
Sbjct 9867 ACGGGTTCTGGTCGTCGCCGTCAAACAAAGAGTTTGTCGGCATCACCGGGACCTCGCGCC 9808
Query 15141 CTATCGACTTCACGC-TGGG--CGATTCCAGCTCGCGCGCCAACCTGCTGAACGAAGCAA 15197
| | || ||| | |||| ||| || || || |||||||| || ||| | ||||
Sbjct 9807 CGGTGGAGTTCCTGGATGGGGACGAAACCTGC---CGGGCCAACCTCCTCAACAACGCAA 9751
Query 15198 AGGTGGCGACCATCATTCGCGAGGACGGTTTCCGCCTGTGGGGCAACCGCACCCTGTCGA 15257
| | | |||||||| ||||| | ||||| ||||||||||||||||| || |||||
Sbjct 9750 ACATCACCACCATCATCCGCGACGGCGGTTATCGCCTGTGGGGCAACCGTACGCTGTCCT 9691
Query 15258 GCGATCAAAAGTGGGCGTTCCTGT-----GCGTGCGCCGCACCGCCGACATCATCAACGA 15312
|||| |||||||| || ||| ||||| ||||||| || ||| ||| ||
Sbjct 9690 CGGATCCGAAGTGGGCATT--TGTCACCCGCGTG---CGCACCGTGGATATCGTCATGGA 9636
Query 15313 CAGCATCCTGGTGAACCACCTGTGGGCCGTGGATCGCGGCATCACCAAGCAGTACATCGA 15372
| ||||| | ||| ||||| || || || |||||||||||| |||||| |
Sbjct 9635 CGCGATCCTCGCCGGACACAAATGGGCAGTCGACCGTGGCATCACCAAGACCTACATCAA 9576
Query 15373 AGACGTGGTGGAAGGCGTGAACGCCTACCTGCGCCACCTG 15412
|| ||| || ||| || | || | | ||| |||||
Sbjct 9575 GGATGTGACCGACGGCCTGCAGGCGTTCATGCAGGACCTG 9536
>seq2966539
Length=502
Score = 109 bits (120), Expect = 1e-19
Identities = 87/105 (83%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 15173 CGCGCCAACCTGCTGAACGAAGCAAAGGTGGCGACCATCATTCGCGAGGACGGTTTCCGC 15232
|| ||||||||||||||| | || || | ||||| ||||||||||| ||||| | ||||
Sbjct 378 CGTGCCAACCTGCTGAACAACGCCAATATCGCGACGATCATTCGCGATGACGGCTACCGC 437
Query 15233 CTGTGGGGCAACCGCACCCTGTCGAGCGATCAAAAGTGGGCGTTC 15277
|||||||||||||||| || ||||| |||| |||||||| |||
Sbjct 438 TTGTGGGGCAACCGCACGCTTTCGAGTGATCCGAAGTGGGCATTC 482
>seq2787928
Length=229
Score = 102 bits (112), Expect = 2e-17
Identities = 85/104 (82%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 15173 CGCGCCAACCTGCTGAACGAAGCAAAGGTGGCGACCATCATTCGCGAGGACGGTTTCCGC 15232
|| ||||||||||||||| | || || | ||||| ||||| ||||| ||||| | |||
Sbjct 23 CGGGCCAACCTGCTGAACAACGCCAATATCGCGACGATCATCCGCGACGACGGCTATCGC 82
Query 15233 CTGTGGGGCAACCGCACCCTGTCGAGCGATCAAAAGTGGGCGTT 15276
||||||| |||||||| ||||||||||||| |||||||| ||
Sbjct 83 TTGTGGGGTAACCGCACGCTGTCGAGCGATCCGAAGTGGGCTTT 126
>seq610375
Length=104
Score = 100 bits (110), Expect = 8e-17
Identities = 67/75 (89%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 21062 ATGGCGACCCCGACAGGATTCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATC 21121
|||||| |||| ||||| ||||||||| |||| | ||||||||||||| ||||||||||
Sbjct 80 ATGGCGCACCCGGCAGGACTCGAACCTGCGACCATCCGCTTAGAAGGCGGATGCTCTATC 21
Query 21122 CAGCTGAGCTACGGG 21136
|||||||||||||||
Sbjct 20 CAGCTGAGCTACGGG 6
>seq2099341
Length=127
Score = 86.0 bits (94), Expect = 2e-12
Identities = 84/107 (79%), Gaps = 6/107 (6%)
Strand=Plus/Minus
Query 23539 CCCTTGCGCAGATACTCGCCGGCAATCTCGGCGACCTTGCCGAAGAACACGACGCGGTGC 23598
|| |||||||| ||||| ||||| |||||||| || |||||||| | | |||||||||
Sbjct 121 CCTTTGCGCAGGTACTCACCGGCGATCTCGGCCACTTTGCCGAACATCGACACGCGGTGC 62
Query 23599 CATTCGGTCTTTTC---CTTGCGCTCGCCGGTCTGCTTGTCCTTCCA 23642
|||||||| || || ||| || ||| ||||||||||| ||||
Sbjct 61 CATTCGGTTTTCTCGACCTT---CTGGCCAGTCTGCTTGTCGGTCCA 18
>seq391464
Length=100
Score = 86.0 bits (94), Expect = 2e-12
Identities = 60/66 (91%), Gaps = 2/66 (3%)
Strand=Plus/Minus
Query 21081 TCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATCCAGCTGAGCTACGGG-GCC 21139
||||||||| |||| | ||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 98 TCGAACCTGCGACCATCCGCTTAGAAGGCGGATGCTCTATCCAGCTGAGCTACGGGCGCC 39
Query 21140 -GATTA 21144
|||||
Sbjct 38 TGATTA 33
>seq2907691
Length=344
Score = 84.2 bits (92), Expect = 6e-12
Identities = 52/56 (93%), Gaps = 0/56 (0%)
Strand=Plus/Minus
Query 21081 TCGAACCTGTGACCGTTCGCTTAGAAGGCGAATGCTCTATCCAGCTGAGCTACGGG 21136
||||||||| |||| | ||||||||||||| |||||||||||||||||||||||||
Sbjct 342 TCGAACCTGCGACCATCCGCTTAGAAGGCGGATGCTCTATCCAGCTGAGCTACGGG 287
>seq2099342
Length=127
Score = 82.4 bits (90), Expect = 2e-11
Identities = 83/107 (78%), Gaps = 6/107 (6%)
Strand=Plus/Minus
Query 23539 CCCTTGCGCAGATACTCGCCGGCAATCTCGGCGACCTTGCCGAAGAACACGACGCGGTGC 23598
|| |||||||| ||||| ||||| |||||||| || |||||||| | | |||||| ||
Sbjct 121 CCTTTGCGCAGGTACTCACCGGCGATCTCGGCCACTTTGCCGAACATCGACACGCGGGGC 62
Query 23599 CATTCGGTCTTTTC---CTTGCGCTCGCCGGTCTGCTTGTCCTTCCA 23642
|||||||| || || ||| || ||| ||||||||||| ||||
Sbjct 61 CATTCGGTTTTCTCGACCTT---CTGGCCAGTCTGCTTGTCGGTCCA 18
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 134174839868132
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