Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq185925 102 6e-17
seq136426 84.2 2e-11
>seq185925
Length=7279
Score = 102 bits (112), Expect = 6e-17
Identities = 152/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633
|| ||| | |||||| ||||| || ||||||||||| || || | | || | |||
Sbjct 304 CAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCATC 363
Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693
|| ||||| ||||||||| | ||| ||||||||| || || ||||| || || || ||
Sbjct 364 TTCCAGTTGCTTGCCAGCACAGATCTGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATC 423
Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753
|| | || || ||| |||||| || || | |||| || |||||||| || ||
Sbjct 424 CTGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCGACCTCAAGAGTGATGGT 483
Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
|| || || | ||| || | || |||||||| ||
Sbjct 484 CTTCCCCGTCAGGGTCTTCATGAAAATCTGCATCTT 519
>seq136426
Length=23094
Score = 84.2 bits (92), Expect = 2e-11
Identities = 158/231 (68%), Gaps = 11/231 (5%)
Strand=Plus/Minus
Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
||||||||||| ||||| ||||| || || ||||| ||||| || ||||| || || |
Sbjct 21301 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 21242
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCG---GC 29676
| |||| | ||| || || ||||| || ||| | ||||| || ||||| |||| |
Sbjct 21241 AGGGTGTGCCCATCTTCCAGCTGTTTCCCTGCAAAGATCAACCTCTGCTGGTCCGGGTGG 21182
Query 29677 GGAATACCCTCTTTG-TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTC 29735
|| | ||||||| | ||||| ||| || | || | ||||| | ||
Sbjct 21181 GGGGTGCCCTCTTGGATCTTG-------GCCTTGGCATTCTCGATGATGTCACTGGGCTC 21129
Query 29736 TACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|| || || || || || || ||||| ||||| || | || ||||||||
Sbjct 21128 CACCTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCATGAAGATCTGCAT 21078
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 370719076335051
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |