Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_023555.1 Length=43017 Score E Sequences producing significant alignments: (Bits) Value seq3088057 86.0 2e-12 >seq3088057 Length=7030 Score = 86.0 bits (94), Expect = 2e-12 Identities = 191/287 (67%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 6200 CGGCAATTGGGATGGGTCGTTTAAATGGGCCTACACCAACAATCCGGCGTGGGTATGGTA 6259 ||||| ||||| || | || ||| ||||||||||||||| || |||||||| | || Sbjct 5608 CGGCATCTGGGACGGCACCTTCAAAGAGGCCTACACCAACAACCCTGCGTGGGTGTTTTA 5667 Query 6260 CGACGTATTGACTCAACCGCGGTTCGGGCTTGGTAAGCGCGTTACGGCGGCCATGCTAGA 6319 ||| | || || || | ||| || || | ||| | || | ||| | || Sbjct 5668 TGACCTGGTGCTGCACCCTTACTACGGCCTCGGCGATCGCATCGATGCCACGATGGTTGA 5727 Query 6320 TAAATGGGAGTTGTACCGCATCGCACAGCGCTGCGATCAGATGGTGCCGGATGGTGCCGG 6379 | ||| | | || |||||||| || |||||||||||||||||||||||| || Sbjct 5728 TCGCTGGTCGCTTTATCGCATCGCGCAATACTGCGATCAGATGGTGCCGGATGGAAAAGG 5787 Query 6380 TGGTGTTGAGCCGCGTTTCGAGTTCAACTGTTATTTGCAGGCGCAGGCCGATGCCTGGAC 6439 || | |||||||| || | |||| || |||| ||||||||| |||| | Sbjct 5788 CGGCATGGAGCCGCGCTTTACCTGCAACCTGTACCTGCAAAAGCAGGCCGAGGCCTACGC 5847 Query 6440 GGTGATCCGTGATATCGCGGCGGGATTTAACGGGCTGACGTATTGGG 6486 |||| | | ||| | || || ||| |||| ||| | || |||| Sbjct 5848 GGTGCTGCAGGATCTGGCATCGATCTTTCACGGTCTGGCCTACTGGG 5894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132488637657778