Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_023575.1
Length=45550
Score E
Sequences producing significant alignments: (Bits) Value
seq3083946 143 7e-30
seq2799564 102 2e-17
seq108461 91.5 4e-14
seq2951953 89.7 1e-13
seq3087968 80.6 7e-11
>seq3083946
Length=2825
Score = 143 bits (158), Expect = 7e-30
Identities = 166/221 (75%), Gaps = 2/221 (1%)
Strand=Plus/Minus
Query 39730 CGTCGTGAACCAGTTGTTCTTCGAACTTCAATCGATCTTCCCGGCCTGGCGGCAGGCGTG 39789
|||||||||| | ||||| ||| | || |||| |||||||||||| ||||| ||
Sbjct 2622 CGTCGTGAACGCGCTGTTCAAAGAATTGCAGGCGATTTTCCCGGCCTGGAAACAGGCTTG 2563
Query 39790 GCCAACCACGGAAGCGATTGCTAAGGCAAAGCGTACTTGGATCAAGGCGTTCATGGACGC 39849
||| | ||| || | || ||||| | |||||||||||||||||| | ||
Sbjct 2562 GCCTGATGCCGAATCGCTGAACGCCGCCAAGCGCAGTTGGATCAAGGCGTTCATCGTTGC 2503
Query 39850 AGGTCTGAACAGTCTGGAGCAGATCCGCTATGGCATTCAGCAATGCCGCGCATCT-GGCG 39908
|| | | || || |||||||||||||| ||| | ||| | ||||| ||| | ||||
Sbjct 2502 GGGGATCACCACCCTTGAGCAGATCCGCTACGGCCTGCAGAACTGCCG-GCAGATCGGCG 2444
Query 39909 GCGACTTCGCGCCAAGCGTCGGCAAGTTCATCAAGTGGTGC 39949
| |||||||||||||||||||||||||||||||| ||||||
Sbjct 2443 GAGACTTCGCGCCAAGCGTCGGCAAGTTCATCAAATGGTGC 2403
>seq2799564
Length=235
Score = 102 bits (112), Expect = 2e-17
Identities = 109/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 30194 CCGACGATCTCCGCCAACTTCCCGAAGAACACCACGCGGTGCCATTCGGTGCGCTCCTGT 30253
||| ||||||| || | ||| ||||| | | |||||||||||||||||| |||
Sbjct 144 CCGGCGATCTCTGCAACCTTGCCGAACATCGACACGCGGTGCCATTCGGTTTTCTCGACC 85
Query 30254 TGCTGGCCGGTCTGCTTGTCCTTCCAGCTCTCGCTGGTGGCGAGGGTGATGTTGGTCACC 30313
| |||||||||||||||||| |||| |||||||| || || | | |||||||||
Sbjct 84 TTCTGGCCGGTCTGCTTGTCAGTCCACTGTTCGCTGGTCGCCAGACTCAGGTTGGTCACG 25
Query 30314 GCATTGCCGTTGGGCATATAGCGA 30337
|| || ||||| |||| ||||||
Sbjct 24 GCGTTACCGTTAGGCAAGTAGCGA 1
>seq108461
Length=6150
Score = 91.5 bits (100), Expect = 4e-14
Identities = 70/83 (84%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 33218 TCCTGCAAGCGCTCGACCCGGACGCTGACGATCTCCAGCAGGATGCGGGAGGCCCAGCGG 33277
|||||||| |||||||| || ||| | ||||||||||||||||||| ||||||||||
Sbjct 4040 TCCTGCAACCGCTCGACGCGCACGGCGGTGATCTCCAGCAGGATGCGGCAGGCCCAGCGC 3981
Query 33278 GGCATGTGGATACTTGGCTTCCA 33300
||||| |||||||| || ||||
Sbjct 3980 GGCATATGGATACTGGGGGTCCA 3958
>seq2951953
Length=451
Score = 89.7 bits (98), Expect = 1e-13
Identities = 184/271 (68%), Gaps = 7/271 (3%)
Strand=Plus/Plus
Query 30056 CCGCCAAACATCTGCATCTGCCCGTGCATGTCGACGATGATCTCTGTTGTGTAGCGGTCC 30115
||||| | || |||||| || ||||||||||| | ||| || || ||||| || |
Sbjct 185 CCGCCCAGCAACTGCATGGTTCCTTGCATGTCGACTACGATTTCAGTGGTGTAACGCT-- 242
Query 30116 TGA--CCGTCCTGCGCCTGCCACTTTCGAGTTCTGAGTGAACCCTCGACGTACAGTTGCT 30173
||| ||||| | || |||| || ||| || || |||| ||| | |||
Sbjct 243 TGATGCCGTCTTTTTCC---CACTCGCGGGTTTGCAGCTTGCCTTCGATGTAGACCTGCG 299
Query 30174 GACCCTTCTTTACGTGCTGCCCGACGATCTCCGCCAACTTCCCGAAGAACACCACGCGGT 30233
||| || | || || || ||||||| || | ||| ||||| ||| ||||||||
Sbjct 300 AACCTTTGCGCAGGTACTCACCAGCGATCTCTGCAACCTTGCCGAACAACGACACGCGGT 359
Query 30234 GCCATTCGGTGCGCTCCTGTTGCTGGCCGGTCTGCTTGTCCTTCCAGCTCTCGCTGGTGG 30293
|||| ||||| ||| | ||| | |||||||||||| |||| |||||||| |
Sbjct 360 GCCACTCGGTTTTCTCTTTGCGCTCGTTGGTCTGCTTGTCGGTCCACTGTTCGCTGGTCG 419
Query 30294 CGAGGGTGATGTTGGTCACCGCATTGCCGTT 30324
| || | | ||||||||| || || |||||
Sbjct 420 CCAGACTCAGGTTGGTCACGGCGTTACCGTT 450
>seq3087968
Length=6546
Score = 80.6 bits (88), Expect = 7e-11
Identities = 68/84 (81%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 32986 TCACGGCGTAACCCGCTTGAACTCGACGACCCAGACCCAGGGATTCGCGGCCCAGGAGTC 33045
||| ||||| ||||||||||||||||| ||||| ||||| || || ||| ||| || ||
Sbjct 3682 TCATGGCGTCACCCGCTTGAACTCGACCACCCATACCCACGGGTTGGCGTTCCACGACTC 3623
Query 33046 GGCGCCGTTGATCGACTCCCACAG 33069
| ||||||||| |||| ||| ||
Sbjct 3622 AGTGCCGTTGATGGACTGCCAAAG 3599
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 140296956119984
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |