Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_023575.1 Length=45550 Score E Sequences producing significant alignments: (Bits) Value seq3083946 143 7e-30 seq2799564 102 2e-17 seq108461 91.5 4e-14 seq2951953 89.7 1e-13 seq3087968 80.6 7e-11 >seq3083946 Length=2825 Score = 143 bits (158), Expect = 7e-30 Identities = 166/221 (75%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 39730 CGTCGTGAACCAGTTGTTCTTCGAACTTCAATCGATCTTCCCGGCCTGGCGGCAGGCGTG 39789 |||||||||| | ||||| ||| | || |||| |||||||||||| ||||| || Sbjct 2622 CGTCGTGAACGCGCTGTTCAAAGAATTGCAGGCGATTTTCCCGGCCTGGAAACAGGCTTG 2563 Query 39790 GCCAACCACGGAAGCGATTGCTAAGGCAAAGCGTACTTGGATCAAGGCGTTCATGGACGC 39849 ||| | ||| || | || ||||| | |||||||||||||||||| | || Sbjct 2562 GCCTGATGCCGAATCGCTGAACGCCGCCAAGCGCAGTTGGATCAAGGCGTTCATCGTTGC 2503 Query 39850 AGGTCTGAACAGTCTGGAGCAGATCCGCTATGGCATTCAGCAATGCCGCGCATCT-GGCG 39908 || | | || || |||||||||||||| ||| | ||| | ||||| ||| | |||| Sbjct 2502 GGGGATCACCACCCTTGAGCAGATCCGCTACGGCCTGCAGAACTGCCG-GCAGATCGGCG 2444 Query 39909 GCGACTTCGCGCCAAGCGTCGGCAAGTTCATCAAGTGGTGC 39949 | |||||||||||||||||||||||||||||||| |||||| Sbjct 2443 GAGACTTCGCGCCAAGCGTCGGCAAGTTCATCAAATGGTGC 2403 >seq2799564 Length=235 Score = 102 bits (112), Expect = 2e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 30194 CCGACGATCTCCGCCAACTTCCCGAAGAACACCACGCGGTGCCATTCGGTGCGCTCCTGT 30253 ||| ||||||| || | ||| ||||| | | |||||||||||||||||| ||| Sbjct 144 CCGGCGATCTCTGCAACCTTGCCGAACATCGACACGCGGTGCCATTCGGTTTTCTCGACC 85 Query 30254 TGCTGGCCGGTCTGCTTGTCCTTCCAGCTCTCGCTGGTGGCGAGGGTGATGTTGGTCACC 30313 | |||||||||||||||||| |||| |||||||| || || | | ||||||||| Sbjct 84 TTCTGGCCGGTCTGCTTGTCAGTCCACTGTTCGCTGGTCGCCAGACTCAGGTTGGTCACG 25 Query 30314 GCATTGCCGTTGGGCATATAGCGA 30337 || || ||||| |||| |||||| Sbjct 24 GCGTTACCGTTAGGCAAGTAGCGA 1 >seq108461 Length=6150 Score = 91.5 bits (100), Expect = 4e-14 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 33218 TCCTGCAAGCGCTCGACCCGGACGCTGACGATCTCCAGCAGGATGCGGGAGGCCCAGCGG 33277 |||||||| |||||||| || ||| | ||||||||||||||||||| |||||||||| Sbjct 4040 TCCTGCAACCGCTCGACGCGCACGGCGGTGATCTCCAGCAGGATGCGGCAGGCCCAGCGC 3981 Query 33278 GGCATGTGGATACTTGGCTTCCA 33300 ||||| |||||||| || |||| Sbjct 3980 GGCATATGGATACTGGGGGTCCA 3958 >seq2951953 Length=451 Score = 89.7 bits (98), Expect = 1e-13 Identities = 184/271 (68%), Gaps = 7/271 (3%) Strand=Plus/Plus Query 30056 CCGCCAAACATCTGCATCTGCCCGTGCATGTCGACGATGATCTCTGTTGTGTAGCGGTCC 30115 ||||| | || |||||| || ||||||||||| | ||| || || ||||| || | Sbjct 185 CCGCCCAGCAACTGCATGGTTCCTTGCATGTCGACTACGATTTCAGTGGTGTAACGCT-- 242 Query 30116 TGA--CCGTCCTGCGCCTGCCACTTTCGAGTTCTGAGTGAACCCTCGACGTACAGTTGCT 30173 ||| ||||| | || |||| || ||| || || |||| ||| | ||| Sbjct 243 TGATGCCGTCTTTTTCC---CACTCGCGGGTTTGCAGCTTGCCTTCGATGTAGACCTGCG 299 Query 30174 GACCCTTCTTTACGTGCTGCCCGACGATCTCCGCCAACTTCCCGAAGAACACCACGCGGT 30233 ||| || | || || || ||||||| || | ||| ||||| ||| |||||||| Sbjct 300 AACCTTTGCGCAGGTACTCACCAGCGATCTCTGCAACCTTGCCGAACAACGACACGCGGT 359 Query 30234 GCCATTCGGTGCGCTCCTGTTGCTGGCCGGTCTGCTTGTCCTTCCAGCTCTCGCTGGTGG 30293 |||| ||||| ||| | ||| | |||||||||||| |||| |||||||| | Sbjct 360 GCCACTCGGTTTTCTCTTTGCGCTCGTTGGTCTGCTTGTCGGTCCACTGTTCGCTGGTCG 419 Query 30294 CGAGGGTGATGTTGGTCACCGCATTGCCGTT 30324 | || | | ||||||||| || || ||||| Sbjct 420 CCAGACTCAGGTTGGTCACGGCGTTACCGTT 450 >seq3087968 Length=6546 Score = 80.6 bits (88), Expect = 7e-11 Identities = 68/84 (81%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 32986 TCACGGCGTAACCCGCTTGAACTCGACGACCCAGACCCAGGGATTCGCGGCCCAGGAGTC 33045 ||| ||||| ||||||||||||||||| ||||| ||||| || || ||| ||| || || Sbjct 3682 TCATGGCGTCACCCGCTTGAACTCGACCACCCATACCCACGGGTTGGCGTTCCACGACTC 3623 Query 33046 GGCGCCGTTGATCGACTCCCACAG 33069 | ||||||||| |||| ||| || Sbjct 3622 AGTGCCGTTGATGGACTGCCAAAG 3599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 140296956119984