Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_023610.1 Length=218339 Score E Sequences producing significant alignments: (Bits) Value seq331658 118 1e-21 seq178508 98.7 1e-15 seq3036489 86.0 8e-12 >seq331658 Length=687 Score = 118 bits (130), Expect = 1e-21 Identities = 222/323 (69%), Gaps = 9/323 (3%) Strand=Plus/Minus Query 99860 CCAAAACCACCTGCGCCGCGTTCAGTTTCCGTACTGAACTCATCCACCTGTTTGAACAGA 99919 |||||||||||||||||||| | |||||| || |||||| | |||| ||| ||| | Sbjct 468 CCAAAACCACCTGCGCCGCGCTGAGTTTC-GTC--GAACTCCTGCACCAGTTCGAAGTGC 412 Query 99920 CCCATCACCACCGGTTGAATCAGGTATTGCGCAATACGGTCGCCACGAGAGATTTTAAAC 99979 || ||||||||| | || | || |||||||| ||||| || ||| || || Sbjct 411 GCCTGTACCACCGGTACCAGCACCAACTGAGCAATACGTTCGCCGACAGCGATGTTGAAT 352 Query 99980 GCAGGTCCCTGAGTGTTACGGTTCCACAGTGAAACCATCAGCTGCCCGTTGTAGTCTGCA 100039 || | || || ||||||||| || ||||||| | || | ||||| | | Sbjct 351 GCGG-----TGT-TGCCACGGTTCCAGCACGACACCATCAATTCACCCTGATAGTCCGAA 298 Query 100040 TCAATGACGCCCGTCAGGTTACCCAGTACGATACCGTGTTTGTGACCCAGACCGGAGCGA 100099 || || | ||| ||||| ||||| ||||| ||||||||||| ||||| |||||||| Sbjct 297 TCGATCAGGCCTACGAGGTTGCCCAGCACGATGCCGTGTTTGTGGCCCAGGCCGGAGCGC 238 Query 100100 GGGTGAATCAATCCCACGTAGTTTGGATTCTTCAGGAAGAATGCCAGACCGGTTGGAATC 100159 || | |||||| || | | ||| | | | ||| | ||| ||||| |||||| Sbjct 237 GGCAGGATCAATGCCGCCAGGCCTGGGTCGCCGACGTAGATCGACAGGCCGGTAGGAATC 178 Query 100160 AGTTTTGTTTCGCCAGGTTCGAG 100182 || |||| | ||| || || || Sbjct 177 AGGATTGTCTGGCCCGGCTCAAG 155 >seq178508 Length=400 Score = 98.7 bits (108), Expect = 1e-15 Identities = 174/250 (70%), Gaps = 9/250 (4%) Strand=Plus/Plus Query 99860 CCAAAACCACCTGCGCCGCGTTCAGTTTCCGTACTGAACTCATCCACCTGTTTGAACAGA 99919 |||||||| ||||||||||||| ||| || | ||||| | ||| ||| ||| | Sbjct 32 CCAAAACCGCCTGCGCCGCGTTGAGTCTCATCA---AACTCTTGAACCAGTTCGAAGTGC 88 Query 99920 CCCATCACCACCGGTTGAATCAGGTATTGCGCAATACGGTCGCCACGAGAGATTTTAAAC 99979 | ||||||||| | || |||||| ||||| |||||| || || || || Sbjct 89 GCTTGCACCACCGGCACCAGCACCAGTTGCGCGATACGCTCGCCAACAGCAATGTTGAAG 148 Query 99980 GCAGGTCCCTGAGTGTTACGGTTCCACAGTGAAACCATCAGCTGCCCGTTGTAGTCTGCA 100039 || |||| || | |||||||| || ||||| |||| || | |||||| | Sbjct 149 GC-GGTC--TGGCCG---CGGTTCCAGCACGACACCATTAGCTCGCCCTGGTAGTCGGAG 202 Query 100040 TCAATGACGCCCGTCAGGTTACCCAGTACGATACCGTGTTTGTGACCCAGACCGGAGCGA 100099 || || | ||| |||||| ||||| ||||| ||||||||||| ||||| |||||||| Sbjct 203 TCGATCAGGCCGACCAGGTTGCCCAGCACGATGCCGTGTTTGTGGCCCAGGCCGGAGCGC 262 Query 100100 GGGTGAATCA 100109 || | |||| Sbjct 263 GGCAGGATCA 272 >seq3036489 Length=965 Score = 86.0 bits (94), Expect = 8e-12 Identities = 172/250 (69%), Gaps = 9/250 (4%) Strand=Plus/Minus Query 99860 CCAAAACCACCTGCGCCGCGTTCAGTTTCCGTACTGAACTCATCCACCTGTTTGAACAGA 99919 ||||||||||||||||| || | ||||| || ||| || | |||| ||| |||| | Sbjct 563 CCAAAACCACCTGCGCCACGCTGGGTTTC-GTC--GAATTCCTGCACCAGTTCGAACTGC 507 Query 99920 CCCATCACCACCGGTTGAATCAGGTATTGCGCAATACGGTCGCCACGAGAGATTTTAAAC 99979 || |||||||| | || ||| || || || ||||| | ||| || || Sbjct 506 GCCTGGACCACCGGCACCAGCACCAGTTGGGCGATGCGCTCGCCGACCGCGATATTGAAT 447 Query 99980 GCAGGTCCCTGAGTGTTACGGTTCCACAGTGAAACCATCAGCTGCCCGTTGTAGTCTGCA 100039 || |||| || | |||||||| || ||||||| | || | |||||| | Sbjct 446 GC-GGTC--TGGCCG---CGGTTCCAGCACGACACCATCAATTCGCCCTGGTAGTCGGAG 393 Query 100040 TCAATGACGCCCGTCAGGTTACCCAGTACGATACCGTGTTTGTGACCCAGACCGGAGCGA 100099 || || | |||| ||| || ||||| ||||| ||||||||||| ||||| |||||||| Sbjct 392 TCGATCAGGCCCACCAGATTGCCCAGCACGATGCCGTGTTTGTGGCCCAGGCCGGAGCGC 333 Query 100100 GGGTGAATCA 100109 || | |||| Sbjct 332 GGCAGGATCA 323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671588045488440