Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_023610.1
Length=218339
Score E
Sequences producing significant alignments: (Bits) Value
seq331658 118 1e-21
seq178508 98.7 1e-15
seq3036489 86.0 8e-12
>seq331658
Length=687
Score = 118 bits (130), Expect = 1e-21
Identities = 222/323 (69%), Gaps = 9/323 (3%)
Strand=Plus/Minus
Query 99860 CCAAAACCACCTGCGCCGCGTTCAGTTTCCGTACTGAACTCATCCACCTGTTTGAACAGA 99919
|||||||||||||||||||| | |||||| || |||||| | |||| ||| ||| |
Sbjct 468 CCAAAACCACCTGCGCCGCGCTGAGTTTC-GTC--GAACTCCTGCACCAGTTCGAAGTGC 412
Query 99920 CCCATCACCACCGGTTGAATCAGGTATTGCGCAATACGGTCGCCACGAGAGATTTTAAAC 99979
|| ||||||||| | || | || |||||||| ||||| || ||| || ||
Sbjct 411 GCCTGTACCACCGGTACCAGCACCAACTGAGCAATACGTTCGCCGACAGCGATGTTGAAT 352
Query 99980 GCAGGTCCCTGAGTGTTACGGTTCCACAGTGAAACCATCAGCTGCCCGTTGTAGTCTGCA 100039
|| | || || ||||||||| || ||||||| | || | ||||| | |
Sbjct 351 GCGG-----TGT-TGCCACGGTTCCAGCACGACACCATCAATTCACCCTGATAGTCCGAA 298
Query 100040 TCAATGACGCCCGTCAGGTTACCCAGTACGATACCGTGTTTGTGACCCAGACCGGAGCGA 100099
|| || | ||| ||||| ||||| ||||| ||||||||||| ||||| ||||||||
Sbjct 297 TCGATCAGGCCTACGAGGTTGCCCAGCACGATGCCGTGTTTGTGGCCCAGGCCGGAGCGC 238
Query 100100 GGGTGAATCAATCCCACGTAGTTTGGATTCTTCAGGAAGAATGCCAGACCGGTTGGAATC 100159
|| | |||||| || | | ||| | | | ||| | ||| ||||| ||||||
Sbjct 237 GGCAGGATCAATGCCGCCAGGCCTGGGTCGCCGACGTAGATCGACAGGCCGGTAGGAATC 178
Query 100160 AGTTTTGTTTCGCCAGGTTCGAG 100182
|| |||| | ||| || || ||
Sbjct 177 AGGATTGTCTGGCCCGGCTCAAG 155
>seq178508
Length=400
Score = 98.7 bits (108), Expect = 1e-15
Identities = 174/250 (70%), Gaps = 9/250 (4%)
Strand=Plus/Plus
Query 99860 CCAAAACCACCTGCGCCGCGTTCAGTTTCCGTACTGAACTCATCCACCTGTTTGAACAGA 99919
|||||||| ||||||||||||| ||| || | ||||| | ||| ||| ||| |
Sbjct 32 CCAAAACCGCCTGCGCCGCGTTGAGTCTCATCA---AACTCTTGAACCAGTTCGAAGTGC 88
Query 99920 CCCATCACCACCGGTTGAATCAGGTATTGCGCAATACGGTCGCCACGAGAGATTTTAAAC 99979
| ||||||||| | || |||||| ||||| |||||| || || || ||
Sbjct 89 GCTTGCACCACCGGCACCAGCACCAGTTGCGCGATACGCTCGCCAACAGCAATGTTGAAG 148
Query 99980 GCAGGTCCCTGAGTGTTACGGTTCCACAGTGAAACCATCAGCTGCCCGTTGTAGTCTGCA 100039
|| |||| || | |||||||| || ||||| |||| || | |||||| |
Sbjct 149 GC-GGTC--TGGCCG---CGGTTCCAGCACGACACCATTAGCTCGCCCTGGTAGTCGGAG 202
Query 100040 TCAATGACGCCCGTCAGGTTACCCAGTACGATACCGTGTTTGTGACCCAGACCGGAGCGA 100099
|| || | ||| |||||| ||||| ||||| ||||||||||| ||||| ||||||||
Sbjct 203 TCGATCAGGCCGACCAGGTTGCCCAGCACGATGCCGTGTTTGTGGCCCAGGCCGGAGCGC 262
Query 100100 GGGTGAATCA 100109
|| | ||||
Sbjct 263 GGCAGGATCA 272
>seq3036489
Length=965
Score = 86.0 bits (94), Expect = 8e-12
Identities = 172/250 (69%), Gaps = 9/250 (4%)
Strand=Plus/Minus
Query 99860 CCAAAACCACCTGCGCCGCGTTCAGTTTCCGTACTGAACTCATCCACCTGTTTGAACAGA 99919
||||||||||||||||| || | ||||| || ||| || | |||| ||| |||| |
Sbjct 563 CCAAAACCACCTGCGCCACGCTGGGTTTC-GTC--GAATTCCTGCACCAGTTCGAACTGC 507
Query 99920 CCCATCACCACCGGTTGAATCAGGTATTGCGCAATACGGTCGCCACGAGAGATTTTAAAC 99979
|| |||||||| | || ||| || || || ||||| | ||| || ||
Sbjct 506 GCCTGGACCACCGGCACCAGCACCAGTTGGGCGATGCGCTCGCCGACCGCGATATTGAAT 447
Query 99980 GCAGGTCCCTGAGTGTTACGGTTCCACAGTGAAACCATCAGCTGCCCGTTGTAGTCTGCA 100039
|| |||| || | |||||||| || ||||||| | || | |||||| |
Sbjct 446 GC-GGTC--TGGCCG---CGGTTCCAGCACGACACCATCAATTCGCCCTGGTAGTCGGAG 393
Query 100040 TCAATGACGCCCGTCAGGTTACCCAGTACGATACCGTGTTTGTGACCCAGACCGGAGCGA 100099
|| || | |||| ||| || ||||| ||||| ||||||||||| ||||| ||||||||
Sbjct 392 TCGATCAGGCCCACCAGATTGCCCAGCACGATGCCGTGTTTGTGGCCCAGGCCGGAGCGC 333
Query 100100 GGGTGAATCA 100109
|| | ||||
Sbjct 332 GGCAGGATCA 323
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671588045488440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |