Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq313959 165 6e-35 seq47025 136 3e-26 seq110407 104 2e-16 seq357474 100 2e-15 >seq313959 Length=22831 Score = 165 bits (182), Expect = 6e-35 Identities = 925/1461 (63%), Gaps = 30/1461 (2%) Strand=Plus/Minus Query 281380 ATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAG 281439 ||| ||||| ||||| || |||| ||| || || || || || ||||| || Sbjct 3068 ATTGGTAATGGTAATCTTGTTGGCCTTGCCCGTGCTCTTGTCCATAGCTGTTACATTGAG 3009 Query 281440 AATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGG 281499 ||||||||||||||| | ||||| || || ||||| || || || || || | || || Sbjct 3008 AATACCATTGGCATCGATGTCAAAGGTCACCTCAATCTGGGGCACTCCCCTGGGTGCCGG 2949 Query 281500 TGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTC 281559 ||||| || || || ||| ||||| || || || ||| | | || Sbjct 2948 AGGGATTCCAGTCAGATCAAAGCGCCCCAGCAGGTTGTTGTCCCGAGTCATGGCCCTCTC 2889 Query 281560 ACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCT 281619 ||||| | | ||||| || | | ||||| ||||| || || || || | ||| Sbjct 2888 GCCCTCATAGACCTGGATCAGCACGCCCGGCTGATTGTCTGAGTAGGTGGTGAAAA-TCT 2830 Query 281620 GGATTTTTTACAAGGA-ATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAG 281678 | | | | | || || || | ||| | | || | ||||| | || || | Sbjct 2829 GTGTCTGCTTCGTGGGGATGGTGGAGTTGCGCTTGATCAGTACAGTCATGACTCCCCCTG 2770 Query 281679 CTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTT 281738 | || || ||||| | ||| || |||| ||||| | | | | | || | |||| Sbjct 2769 CGGTCTCCAAACCTAAAGACAGGGGAGCCACATCCAACAAAAGCAGGTCCTGTACCTTTT 2710 Query 281739 CATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCAT 281798 || | | || | | ||| ||||| |||| ||||| ||||| ||||| || |||| Sbjct 2709 CAGACTTATCCCCCATCAAAATGGCTGCCTGAACTGCAGCCCCATAGGCAACTGCCTCAT 2650 Query 281799 CAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT-TGAAAGAAGTTGTCTT 281857 | || || | | | || || | |||||| || | | || || | | ||| Sbjct 2649 CGGGGTTGATGCTCTTGTTGAGATCACGACCATTAAAGTAGTCCTGCAACA----GCCTT 2594 Query 281858 ---ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTA 281914 |||||||| || |||| || || || ||||| ||||| ||||| | | | |||| Sbjct 2593 TGAACCTTAGGGATTCGAGTAGAGCCCCCTACTAAGACAATGTCATGGATTTTAGCTTTA 2534 Query 281915 TCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCT 281974 |||| || | |||| | | | ||||| || || || || | ||||||| |||| Sbjct 2533 TCCATCTTGGCATCCCGAAGAGCCTTTTCCACAGGCTCCAGGGTGCCCCTAAACAGGTCT 2474 Query 281975 GAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGA 282032 | ||| | ||||| || ||||| || || || | || || ||||| ||||| Sbjct 2473 GCACACAACTCTTCAAACCGGGCTCTGGT--GATGGATGTGTAGAAGTCAATGCCTTCAT 2416 Query 282033 ACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTT 282092 | | ||||||| ||| | | | || || ||| || || | | || || | | Sbjct 2415 AAAGTGAATCAATTTCCAAGTTGGCCTGGGTGCTAGATGACAGGGTCCTCTTGGCCCTCT 2356 Query 282093 CACATGCTGTCCTTAGTCTTCGTA-AG---GCTTTTGCTGATTGATTCAAATCTGTTTTA 282148 | || || || | | | | | || |||| | ||| |||| || | ||| Sbjct 2355 CGCAGGCAGTGCGCAACCGCCTCACAGCCCGCTTGTTCTGGCTGATG----TCCTTCTTA 2300 Query 282149 TATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCT 282208 | ||| |||||||| ||||| ||| | | ||||| | || |||||||| || || Sbjct 2299 TGTTTCCTCTTGAATTCTTCCACAAAGTGGCTCACAAGCCTGTTGTCAAAATCCTCTCCA 2240 Query 282209 CCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAA 282268 ||||| | || | || | || || | || | |||| ||||| || | | || Sbjct 2239 CCCAAGTGGGTGTCCCCAGCTGTGGCCTTAACCTCAAAAATCCCATCATCTATGGTCAGG 2180 Query 282269 AGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT-TCATT-TCTTTGT 282326 | | |||||| || || ||||||| |||||| || | |||| || | || || Sbjct 2179 ACGGACACATCAAATGTGCCTCCACCCAGATCAAAGATCAAGACATGTCGCTCTCCCTGA 2120 Query 282327 CTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCA 282386 | || ||| | | ||| ||||| |||| ||||||||||| |||||||| |||||||| | Sbjct 2119 CCTGCTTTATCT-AAG-CCATAGGCAATGGCAGCAGCAGTGGGTTCATTGATAATTCTTA 2062 Query 282387 AAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAA 282446 ||||| ||||| || || |||||||| || ||||| || | || || || || | Sbjct 2061 GCACATTGAGACCTGCGATAACACCTGCATCCTTGGTGGCCTGACGCTGAGAGTCATTGA 2002 Query 282447 AATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTG 282506 | || || || ||||| || || |||| || || | || | | |||| || | Sbjct 2001 AGTAAGCTGGCACAGTGATCACAGCATTAGTGACAGTGTAGCCCAAAAAAGCCTCAGCAG 1942 Query 282507 TTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATT 282566 | | ||||| ||| | | | ||| || || |||| || ||| || | |||| || Sbjct 1941 TCTCCTTCATCTTAGTCAGTACCATAGAAGAGATTTCCTCAGGATAA-AAAGCTTTCTTT 1883 Query 282567 --CATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGG 282624 | |||| || || || | | || || || | || || |||| || || Sbjct 1882 TCCCCTTTG-TAGGACACCATTACCTTGGGCTTGCCTCCTTCGTTGATTACTTGGAAAGG 1824 Query 282625 CCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTT 282684 |||| ||||||||||||||| || | |||||||| | ||| || || | ||||| Sbjct 1823 CCAAAGTTTCATATCTGATTGCACGACAGGATCATTAAATTTTCTGCCGATCAGACGTTT 1764 Query 282685 TGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAAT 282744 |||||||| | ||| || ||||| | || | || | ||||| ||||| || || Sbjct 1763 GGCATCAAAGACAGTGTTCTGGGGATTCATGGCTACCTGGTTCTTGGCCGCATCGCCGAT 1704 Query 282745 CAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATT 282804 || | || || || || || | || || || || ||||| || || || | || Sbjct 1703 GAGCCGCTCGGTGTCGGTGAAGGCCACGTAGCTGGGGGTGGTGCGGTTGCCCTGGGCGTT 1644 Query 282805 CGCAATAATTTCAACTTTACC 282825 || || || || || || || Sbjct 1643 GGCGATGATCTCCACCTTGCC 1623 >seq47025 Length=35021 Score = 136 bits (150), Expect = 3e-26 Identities = 355/526 (67%), Gaps = 14/526 (3%) Strand=Plus/Plus Query 281409 TTGTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGA 281468 ||||| ||||| | |||| || || ||||| ||||||||||| | |||||| |||| Sbjct 8760 TTGTTCTCTTATCCACAGCAGAGAC-TTGAGAATGCCATTGGCATCAATATCAAAAGTGA 8818 Query 281469 CTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCA 281528 |||| || ||||| || || | | ||||| || || ||| | | ||| || ||| Sbjct 8819 CTTCCATCTGAGGAACACCACAGGGGGCAGGAGGTATGCCTGTGAGTTCAAAC-TTGCCA 8877 Query 281529 GATTA-TTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGAT-AGTAACTAC 281586 | | |||||||| || || |||| ||||| | ||| || || |||| | | Sbjct 8878 GGCAAGTTATTATCGTTGGTCCTGGTTCGCTCACCTACATAAACCTGAATGAGTA-CACC 8936 Query 281587 AGTTTGATTATCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGT 281645 || || || || || || | || || | |||| | || || |||||| || | | Sbjct 8937 AGGCTGGTTGTCAGAGTAGCTGGTGAA-AGTCTGCGTCTTCTTTGTAGGAATGGTGGCAT 8995 Query 281646 TTCTATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAG 281705 | | | | | ||||| | |||||||| ||||| | ||||| |||||||||| Sbjct 8996 TGTGCTTGAGGACA---GTCATGACTCCACCAGCAGTTTCAATTCCAAGGGAAAGAGGAG 9052 Query 281706 TGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCA-ACAAGAATAGCT 281764 ||||||| | || | | | ||||| |||||| | | ||| |||| ||| ||| Sbjct 9053 TGACATCTAACAGCAGCAAGTCTTGAACATTTTCAGATTTGTCTCCAGACAA-AATGGCT 9111 Query 281765 GCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTT 281824 | || ||||| ||||||||||||| ||| ||| | || || | | | ||||| || | Sbjct 9112 ACCTGCATAGCTGCACCATATGCAAGAGCCTCACCGGGGTTGATGCTCTTATTTAATTAT 9171 Query 281825 TTACCATTGAAAAAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCC 281883 || |||||||| || | ||||||| ||| | ||| || || | | ||| || || Sbjct 9172 TTCCCATTGAAGAAGTCCTGGAGAAGTT-TCTCAATCTTGGGGATGTGGGTTGAGCCACC 9230 Query 281884 AACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCC 281929 || || ||||| ||||| | ||| || || ||||| || | |||| Sbjct 9231 CACCAAGACAATATCATGGATCTGAGACTTGTCCAGCTTGGCATCC 9276 >seq110407 Length=16138 Score = 104 bits (114), Expect = 2e-16 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 400297 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTAAT 400356 ||||| || || ||||||||||||| ||||||||||| || ||| | || |||||| | Sbjct 12876 TGTACACTTATCCTGACAGAGGGAGACTCAGCTAAAACTTTAGCTGTTTCAGGCCTTGGT 12935 Query 400357 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 400416 || |||| ||||| | ||||| |||||||| |||||||| ||| | | |||||| | Sbjct 12936 GTGGTTGGGAGAGACAAGTATGGGGTTTTCCCTCTTAGAGGGAAAATACTCAATGTTCGA 12995 Query 400417 GATGCTAGTCCTAAA 400431 || ||| || |||| Sbjct 12996 GAAGCTTCTCATAAA 13010 >seq357474 Length=26394 Score = 100 bits (110), Expect = 2e-15 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || | ||||| |||| ||||||||||||||| ||||| || |||| || || Sbjct 17194 TTTTTGTCTAAGCCATAGGCAATAGCAGCAGCAGTTGGCTCATTGATGATTCGCAGTACG 17135 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || ||||||||||| |||| |||||||| || || || | || || || || || || Sbjct 17134 TTGAGACCAGCAATAGTTCCAGCATCTTTGGTAGCCTGACGCTGAGAGTCATTGAAGTAG 17075 Query 282452 GCAGGAACAGTAATAACGGC 282471 ||||| || || | ||| || Sbjct 17074 GCAGGTACTGTGACAACAGC 17055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3588997561947486