Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq313959 165 6e-35
seq47025 136 3e-26
seq110407 104 2e-16
seq357474 100 2e-15
>seq313959
Length=22831
Score = 165 bits (182), Expect = 6e-35
Identities = 925/1461 (63%), Gaps = 30/1461 (2%)
Strand=Plus/Minus
Query 281380 ATTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAG 281439
||| ||||| ||||| || |||| ||| || || || || || ||||| ||
Sbjct 3068 ATTGGTAATGGTAATCTTGTTGGCCTTGCCCGTGCTCTTGTCCATAGCTGTTACATTGAG 3009
Query 281440 AATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGG 281499
||||||||||||||| | ||||| || || ||||| || || || || || | || ||
Sbjct 3008 AATACCATTGGCATCGATGTCAAAGGTCACCTCAATCTGGGGCACTCCCCTGGGTGCCGG 2949
Query 281500 TGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTC 281559
||||| || || || ||| ||||| || || || ||| | | ||
Sbjct 2948 AGGGATTCCAGTCAGATCAAAGCGCCCCAGCAGGTTGTTGTCCCGAGTCATGGCCCTCTC 2889
Query 281560 ACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCT 281619
||||| | | ||||| || | | ||||| ||||| || || || || | |||
Sbjct 2888 GCCCTCATAGACCTGGATCAGCACGCCCGGCTGATTGTCTGAGTAGGTGGTGAAAA-TCT 2830
Query 281620 GGATTTTTTACAAGGA-ATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAG 281678
| | | | | || || || | ||| | | || | ||||| | || || |
Sbjct 2829 GTGTCTGCTTCGTGGGGATGGTGGAGTTGCGCTTGATCAGTACAGTCATGACTCCCCCTG 2770
Query 281679 CTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTT 281738
| || || ||||| | ||| || |||| ||||| | | | | | || | ||||
Sbjct 2769 CGGTCTCCAAACCTAAAGACAGGGGAGCCACATCCAACAAAAGCAGGTCCTGTACCTTTT 2710
Query 281739 CATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCAT 281798
|| | | || | | ||| ||||| |||| ||||| ||||| ||||| || ||||
Sbjct 2709 CAGACTTATCCCCCATCAAAATGGCTGCCTGAACTGCAGCCCCATAGGCAACTGCCTCAT 2650
Query 281799 CAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT-TGAAAGAAGTTGTCTT 281857
| || || | | | || || | |||||| || | | || || | | |||
Sbjct 2649 CGGGGTTGATGCTCTTGTTGAGATCACGACCATTAAAGTAGTCCTGCAACA----GCCTT 2594
Query 281858 ---ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTA 281914
|||||||| || |||| || || || ||||| ||||| ||||| | | | ||||
Sbjct 2593 TGAACCTTAGGGATTCGAGTAGAGCCCCCTACTAAGACAATGTCATGGATTTTAGCTTTA 2534
Query 281915 TCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCT 281974
|||| || | |||| | | | ||||| || || || || | ||||||| ||||
Sbjct 2533 TCCATCTTGGCATCCCGAAGAGCCTTTTCCACAGGCTCCAGGGTGCCCCTAAACAGGTCT 2474
Query 281975 GAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGA 282032
| ||| | ||||| || ||||| || || || | || || ||||| |||||
Sbjct 2473 GCACACAACTCTTCAAACCGGGCTCTGGT--GATGGATGTGTAGAAGTCAATGCCTTCAT 2416
Query 282033 ACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTT 282092
| | ||||||| ||| | | | || || ||| || || | | || || | |
Sbjct 2415 AAAGTGAATCAATTTCCAAGTTGGCCTGGGTGCTAGATGACAGGGTCCTCTTGGCCCTCT 2356
Query 282093 CACATGCTGTCCTTAGTCTTCGTA-AG---GCTTTTGCTGATTGATTCAAATCTGTTTTA 282148
| || || || | | | | | || |||| | ||| |||| || | |||
Sbjct 2355 CGCAGGCAGTGCGCAACCGCCTCACAGCCCGCTTGTTCTGGCTGATG----TCCTTCTTA 2300
Query 282149 TATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCT 282208
| ||| |||||||| ||||| ||| | | ||||| | || |||||||| || ||
Sbjct 2299 TGTTTCCTCTTGAATTCTTCCACAAAGTGGCTCACAAGCCTGTTGTCAAAATCCTCTCCA 2240
Query 282209 CCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAA 282268
||||| | || | || | || || | || | |||| ||||| || | | ||
Sbjct 2239 CCCAAGTGGGTGTCCCCAGCTGTGGCCTTAACCTCAAAAATCCCATCATCTATGGTCAGG 2180
Query 282269 AGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT-TCATT-TCTTTGT 282326
| | |||||| || || ||||||| |||||| || | |||| || | || ||
Sbjct 2179 ACGGACACATCAAATGTGCCTCCACCCAGATCAAAGATCAAGACATGTCGCTCTCCCTGA 2120
Query 282327 CTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCA 282386
| || ||| | | ||| ||||| |||| ||||||||||| |||||||| |||||||| |
Sbjct 2119 CCTGCTTTATCT-AAG-CCATAGGCAATGGCAGCAGCAGTGGGTTCATTGATAATTCTTA 2062
Query 282387 AAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAA 282446
||||| ||||| || || |||||||| || ||||| || | || || || || |
Sbjct 2061 GCACATTGAGACCTGCGATAACACCTGCATCCTTGGTGGCCTGACGCTGAGAGTCATTGA 2002
Query 282447 AATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTG 282506
| || || || ||||| || || |||| || || | || | | |||| || |
Sbjct 2001 AGTAAGCTGGCACAGTGATCACAGCATTAGTGACAGTGTAGCCCAAAAAAGCCTCAGCAG 1942
Query 282507 TTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATT 282566
| | ||||| ||| | | | ||| || || |||| || ||| || | |||| ||
Sbjct 1941 TCTCCTTCATCTTAGTCAGTACCATAGAAGAGATTTCCTCAGGATAA-AAAGCTTTCTTT 1883
Query 282567 --CATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGG 282624
| |||| || || || | | || || || | || || |||| || ||
Sbjct 1882 TCCCCTTTG-TAGGACACCATTACCTTGGGCTTGCCTCCTTCGTTGATTACTTGGAAAGG 1824
Query 282625 CCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTT 282684
|||| ||||||||||||||| || | |||||||| | ||| || || | |||||
Sbjct 1823 CCAAAGTTTCATATCTGATTGCACGACAGGATCATTAAATTTTCTGCCGATCAGACGTTT 1764
Query 282685 TGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAAT 282744
|||||||| | ||| || ||||| | || | || | ||||| ||||| || ||
Sbjct 1763 GGCATCAAAGACAGTGTTCTGGGGATTCATGGCTACCTGGTTCTTGGCCGCATCGCCGAT 1704
Query 282745 CAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATT 282804
|| | || || || || || | || || || || ||||| || || || | ||
Sbjct 1703 GAGCCGCTCGGTGTCGGTGAAGGCCACGTAGCTGGGGGTGGTGCGGTTGCCCTGGGCGTT 1644
Query 282805 CGCAATAATTTCAACTTTACC 282825
|| || || || || || ||
Sbjct 1643 GGCGATGATCTCCACCTTGCC 1623
>seq47025
Length=35021
Score = 136 bits (150), Expect = 3e-26
Identities = 355/526 (67%), Gaps = 14/526 (3%)
Strand=Plus/Plus
Query 281409 TTGTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGA 281468
||||| ||||| | |||| || || ||||| ||||||||||| | |||||| ||||
Sbjct 8760 TTGTTCTCTTATCCACAGCAGAGAC-TTGAGAATGCCATTGGCATCAATATCAAAAGTGA 8818
Query 281469 CTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCA 281528
|||| || ||||| || || | | ||||| || || ||| | | ||| || |||
Sbjct 8819 CTTCCATCTGAGGAACACCACAGGGGGCAGGAGGTATGCCTGTGAGTTCAAAC-TTGCCA 8877
Query 281529 GATTA-TTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGAT-AGTAACTAC 281586
| | |||||||| || || |||| ||||| | ||| || || |||| | |
Sbjct 8878 GGCAAGTTATTATCGTTGGTCCTGGTTCGCTCACCTACATAAACCTGAATGAGTA-CACC 8936
Query 281587 AGTTTGATTATCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGT 281645
|| || || || || || | || || | |||| | || || |||||| || | |
Sbjct 8937 AGGCTGGTTGTCAGAGTAGCTGGTGAA-AGTCTGCGTCTTCTTTGTAGGAATGGTGGCAT 8995
Query 281646 TTCTATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAG 281705
| | | | | ||||| | |||||||| ||||| | ||||| ||||||||||
Sbjct 8996 TGTGCTTGAGGACA---GTCATGACTCCACCAGCAGTTTCAATTCCAAGGGAAAGAGGAG 9052
Query 281706 TGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCA-ACAAGAATAGCT 281764
||||||| | || | | | ||||| |||||| | | ||| |||| ||| |||
Sbjct 9053 TGACATCTAACAGCAGCAAGTCTTGAACATTTTCAGATTTGTCTCCAGACAA-AATGGCT 9111
Query 281765 GCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTT 281824
| || ||||| ||||||||||||| ||| ||| | || || | | | ||||| || |
Sbjct 9112 ACCTGCATAGCTGCACCATATGCAAGAGCCTCACCGGGGTTGATGCTCTTATTTAATTAT 9171
Query 281825 TTACCATTGAAAAAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCC 281883
|| |||||||| || | ||||||| ||| | ||| || || | | ||| || ||
Sbjct 9172 TTCCCATTGAAGAAGTCCTGGAGAAGTT-TCTCAATCTTGGGGATGTGGGTTGAGCCACC 9230
Query 281884 AACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCC 281929
|| || ||||| ||||| | ||| || || ||||| || | ||||
Sbjct 9231 CACCAAGACAATATCATGGATCTGAGACTTGTCCAGCTTGGCATCC 9276
>seq110407
Length=16138
Score = 104 bits (114), Expect = 2e-16
Identities = 104/135 (77%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 400297 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTAAT 400356
||||| || || ||||||||||||| ||||||||||| || ||| | || |||||| |
Sbjct 12876 TGTACACTTATCCTGACAGAGGGAGACTCAGCTAAAACTTTAGCTGTTTCAGGCCTTGGT 12935
Query 400357 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 400416
|| |||| ||||| | ||||| |||||||| |||||||| ||| | | |||||| |
Sbjct 12936 GTGGTTGGGAGAGACAAGTATGGGGTTTTCCCTCTTAGAGGGAAAATACTCAATGTTCGA 12995
Query 400417 GATGCTAGTCCTAAA 400431
|| ||| || ||||
Sbjct 12996 GAAGCTTCTCATAAA 13010
>seq357474
Length=26394
Score = 100 bits (110), Expect = 2e-15
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391
||||| || | ||||| |||| ||||||||||||||| ||||| || |||| || ||
Sbjct 17194 TTTTTGTCTAAGCCATAGGCAATAGCAGCAGCAGTTGGCTCATTGATGATTCGCAGTACG 17135
Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451
|| ||||||||||| |||| |||||||| || || || | || || || || || ||
Sbjct 17134 TTGAGACCAGCAATAGTTCCAGCATCTTTGGTAGCCTGACGCTGAGAGTCATTGAAGTAG 17075
Query 282452 GCAGGAACAGTAATAACGGC 282471
||||| || || | ||| ||
Sbjct 17074 GCAGGTACTGTGACAACAGC 17055
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3588997561947486
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