Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_023700.1 Length=34553 Score E Sequences producing significant alignments: (Bits) Value seq3084660 147 5e-31 seq3087822 123 5e-24 seq3088451 93.3 9e-15 seq156999 87.8 4e-13 >seq3084660 Length=3030 Score = 147 bits (162), Expect = 5e-31 Identities = 137/170 (81%), Gaps = 3/170 (2%) Strand=Plus/Minus Query 23292 CGATGCAGGAAGCGACCGGCAAGGCTGTTTCGGATACGGTCGCCGAGTTCTCCAAGCTGG 23351 ||||||||||||||||||||||||| || || ||||| |||||||| |||||||||| Sbjct 2200 CGATGCAGGAAGCGACCGGCAAGGCCGTGAGCGAGACGGTTGCCGAGTTTTCCAAGCTGG 2141 Query 23352 CCGACGAACCGGTCAAAGCCTC-GCAACAGCTCAACGAGAAATATCACTACCTGACCGCC 23410 | ||||| |||||||| || || || | ||| |||||| | || ||||||||||| ||| Sbjct 2140 CTGACGATCCGGTCAAGGCGTCCGCCGC-GCTAAACGAGCAGTACCACTACCTGACTGCC 2082 Query 23411 TCGGTTTACGAGCAGATAGCCGCCCTCGATCAGCAAGGCGAT-TCGCTGG 23459 ||||||||| ||| || | || || || ||||||||||| |||||| Sbjct 2081 TCGGTTTACTCGCAAATCGTGGCTCTGGAGAAGCAAGGCGATCACGCTGG 2032 >seq3087822 Length=6084 Score = 123 bits (136), Expect = 5e-24 Identities = 126/162 (78%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 23292 CGATGCAGGAAGCGACCGGCAAGGCTGTTTCGGATACGGTCGCCGAGTTCTCCAAGCTGG 23351 |||||||||| || ||||||||||| || || |||||||| ||||||||||| |||| Sbjct 5242 CGATGCAGGAGGCCACCGGCAAGGCCGTAAGCGAAACGGTCGCTGAGTTCTCCAAACTGG 5183 Query 23352 CCGACGAACCGGTCAAAGCCTC-GCAACAGCTCAACGAGAAATATCACTACCTGACCGCC 23410 | ||||| |||||||| || || || | ||| || ||| |||| || |||||||| ||| Sbjct 5182 CTGACGATCCGGTCAAGGCATCCGCCGC-GCTTAATGAGCAATACCATTACCTGACTGCC 5124 Query 23411 TCGGTTTACGAGCAGATAGCCGCCCTCGATCAGCAAGGCGAT 23452 |||||||| ||| || | || || || || |||||| || Sbjct 5123 TCGGTTTATTCGCAAATTTCAGCACTGGAACAACAAGGCAAT 5082 Score = 82.4 bits (90), Expect = 2e-11 Identities = 141/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 24239 GACCAGGTCACCGCAGCCTATGAGGGGGAAATCCAGGCGCTGGAGGCGCTGCGCGACAAA 24298 |||||||| || || ||||| |||| || ||| || ||||| || | | ||| Sbjct 4367 GACCAGGTGACGGCGGCCTACGAGGCCGAGATCACCGCACTGGAAGCCGTCAAGGGCAAG 4308 Query 24299 AGTTCCACCACGGCGGCCCAGCGCATCAGCCTGGACCAGAAGATCGCCGAGGCCAGGAAC 24358 | | || |||| || ||| ||||| |||||||||||||||||||| || | | | Sbjct 4307 AAGACAACATCGGCCGCGCAGAGCATCCAGCTGGACCAGAAGATCGCCGACGC-ACGCGC 4249 Query 24359 AA-CATGGTCAAGGCGCAGAAGAAGGCCGACGCCGACCTGGAAGTCCTCCAGCTCAACGA 24417 | ||||||||||||||||||| | || ||| | | || ||||| || | ||||| Sbjct 4248 AGGCATGGTCAAGGCGCAGAAGGACGCTGACAGCCAGCTTGAAGTGCTGGCGACGAACGA 4189 Query 24418 ACAGGGGCGCCTGAAGAAACAG 24439 ||||||||| |||||| Sbjct 4188 GACCGGGCGCCTGGCCAAACAG 4167 >seq3088451 Length=13260 Score = 93.3 bits (102), Expect = 9e-15 Identities = 209/304 (69%), Gaps = 10/304 (3%) Strand=Plus/Plus Query 24143 AACGCCGAGCAGAAGCTCCAGGCGCAGCAGCGCGCCGGCCTGCTGA-GCTATGCGGACTA 24201 |||||| || || | || ||||||||||| || ||| || | ||| | ||||||| Sbjct 7376 AACGCCCAGAAGGAACTGGAGGCGCAGCAGAAGGCTGGCGTGGTTTCGCTGT-CGGACTA 7434 Query 24202 TGTCGCGCAGCGCGGCGAAC-TGATCAGCCAGAACAAGGACCAGGTCACCGCAGCCTATG 24260 | ||| || | ||| | |||||| |||| | |||||| | || || || || || Sbjct 7435 CGCAAAGCAACG-GTCGACCCTGATCAACCAGGAAAAGGACGATGTGACGGCCGCGTACC 7493 Query 24261 AGGGGGAAATCCAGGCGCTGGAGGCG--CTGCGCGACAAAAGTTCCACCACGGCGGCCCA 24318 ||| || ||| | || ||||||||| | || | |||| ||| ||| |||| || Sbjct 7494 AGGCTGAGATCGATGCACTGGAGGCGGCCAAGGCCAAGAAAGG--CACAACGACGGCTCA 7551 Query 24319 GCGCATCAGCCTGGACCAGAAGATCGCCGAGGCCAGGAACAACATGGTCAAGGCGCAGAA 24378 | | ||| |||||||| ||||||||||| || || | ||||||||||| ||||| Sbjct 7552 GAGTATCCAGCTGGACCAAAAGATCGCCGATGCACGGCAGGGGATGGTCAAGGCTCAGAA 7611 Query 24379 GAAGGCCGACGCCGACCTGGAAGTC-CTCCAGCTCAACGAACAGGGGCGCCTGAAGAAAC 24437 | | || ||| | | ||| ||| | || | |||||| | || |||||| || ||| Sbjct 7612 GGATGCTGACAGCCAGCTGACCGTCATTGCAAC-GAACGAAAAAGGCCGCCTGGAGCAAC 7670 Query 24438 AGAC 24441 ||| Sbjct 7671 TGAC 7674 >seq156999 Length=6365 Score = 87.8 bits (96), Expect = 4e-13 Identities = 118/163 (72%), Gaps = 1/163 (1%) Strand=Plus/Plus Query 8275 AACCTCGCGGCATCCGCAACAACAACCCCGGCAACATCGTTTGGTCGGCACGCAACAACT 8334 |||| |||||| | || ||| ||||||||||||||||| | || |||| | | Sbjct 3934 AACC-CGCGGCGTTCGTAACCGCAACCCCGGCAACATCGACTACAACTCAGCCAACCAGT 3992 Query 8335 GGCAGGGCCAGCTCCCGCACAACCCGAAGATCGAGCCCCGATTCGCCCGCTTCGACACCG 8394 |||| ||||||||| || | | ||| | | ||| || |||||||| || || || Sbjct 3993 GGCAAGGCCAGCTCAAGCCCGATCCGTCGCTTGAGAAGCGGTTCGCCCGGTTTGATACGC 4052 Query 8395 CGCATAACGGCATCCGCGCCCTGGCAAAGCTGCTGCTGAACTA 8437 | | ||||| ||||||||||||| ||| ||||||||| ||| Sbjct 4053 CCGAGAACGGTATCCGCGCCCTGGGCAAGTTGCTGCTGACCTA 4095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 106397201627730