Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_023717.1 Length=151924 Score E Sequences producing significant alignments: (Bits) Value seq240294 89.7 5e-13 seq501696 84.2 2e-11 >seq240294 Length=15375 Score = 89.7 bits (98), Expect = 5e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 148134 GCTGGATTAGCTCAGTTGGTAGAGCAACTGATTTGTAATCAGAAGGTCGCGGGTTCGAAC 148193 || || ||||||||||||||||||||||||| |||||||||| ||||| ||||||||| Sbjct 3687 GCCGGTTTAGCTCAGTTGGTAGAGCAACTGACTTGTAATCAGTAGGTCCCGGGTTCGACT 3746 Query 148194 CCTGCATCCAGCACCAGAT 148212 |||| || |||||| || Sbjct 3747 CCTGGTGCCGGCACCATAT 3765 >seq501696 Length=102 Score = 84.2 bits (92), Expect = 2e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 148141 TAGCTCAGTTGGTAGAGCAACTGATTTGTAATCAGAAGGTCGCGGGTTCGAACCCTGCAT 148200 |||||||||||||||||||||||| |||||||||| ||||| ||||||||| |||| Sbjct 71 TAGCTCAGTTGGTAGAGCAACTGACTTGTAATCAGTAGGTCCCGGGTTCGACTCCTGGTG 12 Query 148201 CCAGCACCA 148209 || |||||| Sbjct 11 CCGGCACCA 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 467264983811040