Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq2851332 104 7e-17 >seq2851332 Length=271 Score = 104 bits (114), Expect = 7e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 188971 ATCGATGAAGTAGATAAAATTGCTAGAAAATCAGAAAGCACATCCATTACCCGAGATGTA 189030 ||||| ||| | || || ||| | | || || || | | | || || ||||| |||||| Sbjct 270 ATCGACGAAATCGACAAGATTTCGCGCAAGTCCGACAACCCGTCGATCACCCGCGATGTA 211 Query 189031 TCTGGCGAAGGAGTACAGCAAGCTTTATTAAAAATCATTGAAGGTACAGTTGCGAAAGTT 189090 || || ||||| || ||||| ||| | || ||| | || ||||| || ||||| || Sbjct 210 TCGGGTGAAGGCGTGCAGCAGGCTCTGTTGAAACTGATCGAAGGCACGGTTGCTTCCGTA 151 Query 189091 CCTCCTCAAGGTGGTCGTAAACACCCTCACCAAGAAATGCTTGAAATAGATACAACTAAT 189150 || ||||||||||| || || ||||| || || ||| | ||| | | ||||| || Sbjct 150 CCGCCTCAAGGTGGCCGCAAGCACCCGCAGCAGGAATTTCTTCAGGTTGATACGCGCAAC 91 Query 189151 ATCTTGTTTATTCTTGGTGGAGCGTTTGATGGTCTTGAAAACATTAT 189197 ||| |||| || ||| || ||||| ||||| ||||| |||| Sbjct 90 ATCCTGTTCATCTGTGGCGGTGCGTTCTCCGGTCTGGAAAAGGTTAT 44 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1528916042488128