Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_023734.1
Length=35725
Score E
Sequences producing significant alignments: (Bits) Value
seq3088379 102 2e-17
>seq3088379
Length=10556
Score = 102 bits (112), Expect = 2e-17
Identities = 437/674 (65%), Gaps = 30/674 (4%)
Strand=Plus/Plus
Query 12834 CTGCCACATACCAAAGGTGAGTGGGCATTAAAGCGCTTAAAAATTCA-GCTTGAACCTTG 12892
|| || || ||||| || ||||||||||| ||||| | | ||| ||| || |||||
Sbjct 613 CTACCGCACACCAAGGGCGAGTGGGCATTCAAGCG-TCAGCTGATCACGCTCGAGCCTTG 671
Query 12893 GCAAAAATTTGGTATTGCGGTCACGTTCGGTTGGATGCGTAAAAAAGATGGCTT----CC 12948
||| ||||| | || || || ||||| ||| ||||| |||| || ||
Sbjct 672 GCAGCTTTTTGGCCTAGCCGTGACATTCGGCTGG----GTAAAGAAGAAGGGCGGGCACC 727
Query 12949 GCCGCTTTCGTGAGTCCTATTGGGAAGTGCCGCGTAAAAATGGCAAGTCAGCAATTGCTG 13008
|||| || ||||| ||| ||||||||||| | ||||| ||||| || | |||| |
Sbjct 728 GCCGGTTCCGTGAAAGCTACTGGGAAGTGCCCAGAAAAAACGGCAAATCGGTTGTTGCCG 787
Query 13009 CCGGCGTCGCTCTTAATATGTTTGCCAATGATGGTGAGTTTGGTAGCGAAGTTTATTCAG 13068
||||| | | | ||||| | | ||||| ||||| || ||| || || |||
Sbjct 788 GTGGCGTTGGCATCAGCATGTTCGTCGCCGATGGCGAGTTCGGCGCCGAGGTGTACGCAG 847
Query 13069 GCGCTACAACAGAGAAGCAAGCGTGGGAGGTTTTTAAGCCGGCACGTTTGATGGTGTTAC 13128
| || || || ||||| || || ||||||||||| ||| || |||||||
Sbjct 848 GGGCGACCACTGAGAAACAGGCCTGGGAGGTTTTCCGGCCTGCCAAGCTGATGGTCAGCA 907
Query 13129 GATCACC--TGCCTTGGTATCA-GCAACCGGCATACAGATTAACGCGGCCAGTCTCGAGC 13185
||| || ||| || | ||| || ||||||| || | ||||| | | | | || |
Sbjct 908 AATCCCCGATGC--TGAT-TCAGGCCGCCGGCATCGAGGTGAACGCCTCGAATAT-GAAC 963
Query 13186 GCCCCGATGATGGTTC--TTTGTTTGAACCCATTATTGGCAACCCGCCAGATGGTCAGTC 13243
|||| | ||| | || || || | || || ||||| || || ||
Sbjct 964 ATCCCG-TCCGACTTCAGTCGCTTCGAGCCACTGATCGGTAACCCTGGCGACGGCGCATC 1022
Query 13244 ACCACATTGCGCCATCGTTGATGAATATCATGAGCATGC--TGATAGCAGTCTCTATGAC 13301
|| ||||||||||| || || || || || || | | ||| | || |||
Sbjct 1023 GCCGAGCTGCGCCATCGTCGACGAGTACCACGAACACCCAACGTCGGCA--CAGTACGAC 1080
Query 13302 ACGATGCAAACGGGTATGGGTGCGCGCCGCCAACCAATGATGTTTGTCATTACCACAGCC 13361
|| |||| || || ||||| || || || || ||| ||||||| |||| ||||| |||
Sbjct 1081 ACCATGCTCACAGGGATGGGCGCCCGGCGTCAGCCACTGATGTTCATCATCACCACCGCC 1140
Query 13362 GGGCATAATATTGAAGGTCCTTGTTATG---AGCTCCGTAGTCGCGTGCAAGATGTGCTA 13418
|| | |||||||| || || || | ||| ||| ||| | ||| ||||
Sbjct 1141 GGCGCCGACATTGAAGGCCCGTGCTACGACAAGCGCCGCCAGGTCGT-CGAGA--TGCTC 1197
Query 13419 TTGGGTAACGTACCTGATGACGAGTTGTTTGGTTGGATATGGACTATCGATGATGGTGAT 13478
|||| ||| || ||||| ||||| || || ||||| ||||| | || || || ||
Sbjct 1198 GCCGGTACCGTGCCGGATGAAGAGTTATTCGGCTGGATCTGGACGCTTGACGAGGGCGAC 1257
Query 13479 GATTGGGCAGACCC 13492
|| ||| | || ||
Sbjct 1258 GACTGGACCGATCC 1271
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 110010051701834
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |