Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_023734.1 Length=35725 Score E Sequences producing significant alignments: (Bits) Value seq3088379 102 2e-17 >seq3088379 Length=10556 Score = 102 bits (112), Expect = 2e-17 Identities = 437/674 (65%), Gaps = 30/674 (4%) Strand=Plus/Plus Query 12834 CTGCCACATACCAAAGGTGAGTGGGCATTAAAGCGCTTAAAAATTCA-GCTTGAACCTTG 12892 || || || ||||| || ||||||||||| ||||| | | ||| ||| || ||||| Sbjct 613 CTACCGCACACCAAGGGCGAGTGGGCATTCAAGCG-TCAGCTGATCACGCTCGAGCCTTG 671 Query 12893 GCAAAAATTTGGTATTGCGGTCACGTTCGGTTGGATGCGTAAAAAAGATGGCTT----CC 12948 ||| ||||| | || || || ||||| ||| ||||| |||| || || Sbjct 672 GCAGCTTTTTGGCCTAGCCGTGACATTCGGCTGG----GTAAAGAAGAAGGGCGGGCACC 727 Query 12949 GCCGCTTTCGTGAGTCCTATTGGGAAGTGCCGCGTAAAAATGGCAAGTCAGCAATTGCTG 13008 |||| || ||||| ||| ||||||||||| | ||||| ||||| || | |||| | Sbjct 728 GCCGGTTCCGTGAAAGCTACTGGGAAGTGCCCAGAAAAAACGGCAAATCGGTTGTTGCCG 787 Query 13009 CCGGCGTCGCTCTTAATATGTTTGCCAATGATGGTGAGTTTGGTAGCGAAGTTTATTCAG 13068 ||||| | | | ||||| | | ||||| ||||| || ||| || || ||| Sbjct 788 GTGGCGTTGGCATCAGCATGTTCGTCGCCGATGGCGAGTTCGGCGCCGAGGTGTACGCAG 847 Query 13069 GCGCTACAACAGAGAAGCAAGCGTGGGAGGTTTTTAAGCCGGCACGTTTGATGGTGTTAC 13128 | || || || ||||| || || ||||||||||| ||| || ||||||| Sbjct 848 GGGCGACCACTGAGAAACAGGCCTGGGAGGTTTTCCGGCCTGCCAAGCTGATGGTCAGCA 907 Query 13129 GATCACC--TGCCTTGGTATCA-GCAACCGGCATACAGATTAACGCGGCCAGTCTCGAGC 13185 ||| || ||| || | ||| || ||||||| || | ||||| | | | | || | Sbjct 908 AATCCCCGATGC--TGAT-TCAGGCCGCCGGCATCGAGGTGAACGCCTCGAATAT-GAAC 963 Query 13186 GCCCCGATGATGGTTC--TTTGTTTGAACCCATTATTGGCAACCCGCCAGATGGTCAGTC 13243 |||| | ||| | || || || | || || ||||| || || || Sbjct 964 ATCCCG-TCCGACTTCAGTCGCTTCGAGCCACTGATCGGTAACCCTGGCGACGGCGCATC 1022 Query 13244 ACCACATTGCGCCATCGTTGATGAATATCATGAGCATGC--TGATAGCAGTCTCTATGAC 13301 || ||||||||||| || || || || || || | | ||| | || ||| Sbjct 1023 GCCGAGCTGCGCCATCGTCGACGAGTACCACGAACACCCAACGTCGGCA--CAGTACGAC 1080 Query 13302 ACGATGCAAACGGGTATGGGTGCGCGCCGCCAACCAATGATGTTTGTCATTACCACAGCC 13361 || |||| || || ||||| || || || || ||| ||||||| |||| ||||| ||| Sbjct 1081 ACCATGCTCACAGGGATGGGCGCCCGGCGTCAGCCACTGATGTTCATCATCACCACCGCC 1140 Query 13362 GGGCATAATATTGAAGGTCCTTGTTATG---AGCTCCGTAGTCGCGTGCAAGATGTGCTA 13418 || | |||||||| || || || | ||| ||| ||| | ||| |||| Sbjct 1141 GGCGCCGACATTGAAGGCCCGTGCTACGACAAGCGCCGCCAGGTCGT-CGAGA--TGCTC 1197 Query 13419 TTGGGTAACGTACCTGATGACGAGTTGTTTGGTTGGATATGGACTATCGATGATGGTGAT 13478 |||| ||| || ||||| ||||| || || ||||| ||||| | || || || || Sbjct 1198 GCCGGTACCGTGCCGGATGAAGAGTTATTCGGCTGGATCTGGACGCTTGACGAGGGCGAC 1257 Query 13479 GATTGGGCAGACCC 13492 || ||| | || || Sbjct 1258 GACTGGACCGATCC 1271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 110010051701834