Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_023738.1 Length=106327 Score E Sequences producing significant alignments: (Bits) Value seq3066367 114 8e-21 seq2606047 98.7 6e-16 seq261985 93.3 3e-14 >seq3066367 Length=1492 Score = 114 bits (126), Expect = 8e-21 Identities = 144/195 (74%), Gaps = 7/195 (4%) Strand=Plus/Plus Query 94572 GAACGACAGCCGCGAGGGCACGTTGCTCTTGATGAGGCCCGTCACCACATCCACGGAGGG 94631 ||||| || |||| || | |||| |||||| ||||| || | ||||||||| || || Sbjct 898 GAACGCCATACGCGTAGGAATGTTGGCCTTGATCAGGCCGGTGATCACATCCACCGACGG 957 Query 94632 CCGCTGCGTCGCCAGGACGAGATGAATGCCGGCCGCACGCGCCTTCTGCGCGATGCGGAC 94691 |||||| || || |||| || || || ||||||||||| |||||||| ||||| || | Sbjct 958 CCGCTGGGTGGCGAGGATCAGGTGGATCCCGGCCGCACGGGCCTTCTGGGCGATACGCGC 1017 Query 94692 AAT--GTTGGCCTCAACCTCTTTCTTGTAGCCACCCATCATGAGGTCCGCGAGTTCATCC 94749 || ||| | || ||| |||||| | | |||||| | ||| |||| ||| || Sbjct 1018 GATCAGTT--CTTCGACC---TTCTTGCCGACGATCATCATCATGTCGGCGAATTCGTCG 1072 Query 94750 ACCACTACCACGATG 94764 ||||| ||||||||| Sbjct 1073 ACCACCACCACGATG 1087 >seq2606047 Length=181 Score = 98.7 bits (108), Expect = 6e-16 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 94572 GAACGACAGCCGCGAGGGCACGTTGCTCTTGATGAGGCCCGTCACCACATCCACGGAGGG 94631 ||||| || ||||| || | |||| |||||| | ||| || | ||||||||| || || Sbjct 19 GAACGCCATCCGCGTTGGAATGTTGGCCTTGATCAAGCCGGTGATCACATCCACCGACGG 78 Query 94632 CCGCTGCGTCGCCAGGACGAGATGAATGCCGGCCGCACGCGCCTTCTGCGCGATGCG 94688 |||||| ||||| |||| | ||||| ||||||||||||||||| || ||||| || Sbjct 79 CCGCTGGGTCGCGAGGATCAAGTGAATACCGGCCGCACGCGCCTTTTGGGCGATACG 135 >seq261985 Length=1168 Score = 93.3 bits (102), Expect = 3e-14 Identities = 185/265 (70%), Gaps = 18/265 (7%) Strand=Plus/Minus Query 94433 CATCGGAGACGAACGCGCCCTGTATCCGGAT-GGC--GCTGCGCGCCCCCACCGGCAGGA 94489 ||||||| || ||||| || || | ||| || ||| |||| | || ||||| | Sbjct 302 CATCGGACACAAACGCACCGTGAACCCGAATCGGCAGGCTG---GTGCCGGGCGGCATGT 246 Query 94490 ATAACCCGTCACCCATTCCCATGAGCTGCTCGGCTCCGCCCTCGTCCAGGATC--ACCCG 94547 | | | |||||| |||| || |||||||| ||||||| ||| | ||| || || Sbjct 245 ACAGCATGTCACCGTGGCCCAGCAGTTGCTCGGCGCCGCCCTGGTCGATGATGGTACGCG 186 Query 94548 GCT--ATC--GGTGAGGGACGCTGTGGCGAACGACAGCCGCGAGGGCACGTTGCTCTTGA 94603 | ||| | || | ||| ||| ||||| || ||||| || | |||| ||||| Sbjct 185 AGTCGATCTTGCTG-GAGAC-CTG----GAACGCCATCCGCGTTGGAATGTTGGCCTTGA 132 Query 94604 TGAGGCCCGTCACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATGCCGG 94663 | | ||| || | |||||||| || |||||||| ||||| |||| | ||||| |||| Sbjct 131 TCAAGCCGGTGATTACATCCACCGACGGCCGCTGGGTCGCGAGGATCAAGTGAATACCGG 72 Query 94664 CCGCACGCGCCTTCTGCGCGATGCG 94688 ||||||| ||||| || ||||| || Sbjct 71 CCGCACGGGCCTTTTGGGCGATACG 47 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 327319005370448