Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_023738.1
Length=106327
Score E
Sequences producing significant alignments: (Bits) Value
seq3066367 114 8e-21
seq2606047 98.7 6e-16
seq261985 93.3 3e-14
>seq3066367
Length=1492
Score = 114 bits (126), Expect = 8e-21
Identities = 144/195 (74%), Gaps = 7/195 (4%)
Strand=Plus/Plus
Query 94572 GAACGACAGCCGCGAGGGCACGTTGCTCTTGATGAGGCCCGTCACCACATCCACGGAGGG 94631
||||| || |||| || | |||| |||||| ||||| || | ||||||||| || ||
Sbjct 898 GAACGCCATACGCGTAGGAATGTTGGCCTTGATCAGGCCGGTGATCACATCCACCGACGG 957
Query 94632 CCGCTGCGTCGCCAGGACGAGATGAATGCCGGCCGCACGCGCCTTCTGCGCGATGCGGAC 94691
|||||| || || |||| || || || ||||||||||| |||||||| ||||| || |
Sbjct 958 CCGCTGGGTGGCGAGGATCAGGTGGATCCCGGCCGCACGGGCCTTCTGGGCGATACGCGC 1017
Query 94692 AAT--GTTGGCCTCAACCTCTTTCTTGTAGCCACCCATCATGAGGTCCGCGAGTTCATCC 94749
|| ||| | || ||| |||||| | | |||||| | ||| |||| ||| ||
Sbjct 1018 GATCAGTT--CTTCGACC---TTCTTGCCGACGATCATCATCATGTCGGCGAATTCGTCG 1072
Query 94750 ACCACTACCACGATG 94764
||||| |||||||||
Sbjct 1073 ACCACCACCACGATG 1087
>seq2606047
Length=181
Score = 98.7 bits (108), Expect = 6e-16
Identities = 92/117 (79%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 94572 GAACGACAGCCGCGAGGGCACGTTGCTCTTGATGAGGCCCGTCACCACATCCACGGAGGG 94631
||||| || ||||| || | |||| |||||| | ||| || | ||||||||| || ||
Sbjct 19 GAACGCCATCCGCGTTGGAATGTTGGCCTTGATCAAGCCGGTGATCACATCCACCGACGG 78
Query 94632 CCGCTGCGTCGCCAGGACGAGATGAATGCCGGCCGCACGCGCCTTCTGCGCGATGCG 94688
|||||| ||||| |||| | ||||| ||||||||||||||||| || ||||| ||
Sbjct 79 CCGCTGGGTCGCGAGGATCAAGTGAATACCGGCCGCACGCGCCTTTTGGGCGATACG 135
>seq261985
Length=1168
Score = 93.3 bits (102), Expect = 3e-14
Identities = 185/265 (70%), Gaps = 18/265 (7%)
Strand=Plus/Minus
Query 94433 CATCGGAGACGAACGCGCCCTGTATCCGGAT-GGC--GCTGCGCGCCCCCACCGGCAGGA 94489
||||||| || ||||| || || | ||| || ||| |||| | || ||||| |
Sbjct 302 CATCGGACACAAACGCACCGTGAACCCGAATCGGCAGGCTG---GTGCCGGGCGGCATGT 246
Query 94490 ATAACCCGTCACCCATTCCCATGAGCTGCTCGGCTCCGCCCTCGTCCAGGATC--ACCCG 94547
| | | |||||| |||| || |||||||| ||||||| ||| | ||| || ||
Sbjct 245 ACAGCATGTCACCGTGGCCCAGCAGTTGCTCGGCGCCGCCCTGGTCGATGATGGTACGCG 186
Query 94548 GCT--ATC--GGTGAGGGACGCTGTGGCGAACGACAGCCGCGAGGGCACGTTGCTCTTGA 94603
| ||| | || | ||| ||| ||||| || ||||| || | |||| |||||
Sbjct 185 AGTCGATCTTGCTG-GAGAC-CTG----GAACGCCATCCGCGTTGGAATGTTGGCCTTGA 132
Query 94604 TGAGGCCCGTCACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATGCCGG 94663
| | ||| || | |||||||| || |||||||| ||||| |||| | ||||| ||||
Sbjct 131 TCAAGCCGGTGATTACATCCACCGACGGCCGCTGGGTCGCGAGGATCAAGTGAATACCGG 72
Query 94664 CCGCACGCGCCTTCTGCGCGATGCG 94688
||||||| ||||| || ||||| ||
Sbjct 71 CCGCACGGGCCTTTTGGGCGATACG 47
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 327319005370448
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |