Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_023744.1
Length=60588
Score E
Sequences producing significant alignments: (Bits) Value
seq2955700 122 3e-23
seq2815131 82.4 3e-11
>seq2955700
Length=463
Score = 122 bits (134), Expect = 3e-23
Identities = 117/150 (78%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 49391 TGCCGTTCGTCCACCCGCATGTGGCGCTGATGCCCGACGCGCACGCCGGCAAGGGTTCAT 49450
||||||| || | ||| | ||| ||||||| || | |||| |||||||||||
Sbjct 430 TGCCGTTTATCTTCAAGCACCTCGCGGTGATGCCGGATGTGCACCTGGGCAAGGGTTCGA 371
Query 49451 CGGTCGGCACCGTCATCCCGACTATCGACGCCGTGATCCCGGCCGCGGTGGGCGTGGACA 49510
| |||||| ||| ||||| || | | ||| | |||||||| ||||||||||||||||
Sbjct 370 CCATCGGCAGCGTAATCCCCACGGTGGGCGCGATTATCCCGGCGGCGGTGGGCGTGGACA 311
Query 49511 TCGGCTGCGGGATGATCGCCGCCCGCACCA 49540
|||||||||||||||| ||||| |||||||
Sbjct 310 TCGGCTGCGGGATGATTGCCGCGCGCACCA 281
>seq2815131
Length=243
Score = 82.4 bits (90), Expect = 3e-11
Identities = 162/236 (69%), Gaps = 8/236 (3%)
Strand=Plus/Plus
Query 49773 CGGTAACCATTTCATCGAACTATGCCTGGACGAA-ACCGGCCGGGTGTGGCTGTTCCTGC 49831
||| ||||| ||| |||| | ||||||||| | | | || | |||||| | | ||||
Sbjct 12 CGGCAACCACTTCGTCGAGGTCTGCCTGGACCAGGAGCAGC-GCGTGTGGTTCATGCTGC 70
Query 49832 ACTCCGGGTCGCGTGGCGTCGGCAACAAGATCGCCCAAAAGCACATCAAGGTCGC---GC 49888
||||||| ||||||||||| ||||| |||| | | |||| || | || ||
Sbjct 71 ACTCCGGTTCGCGTGGCGTAGGCAATGCCATCGGCACCTACTTCATCGAGCTGGCCAAGC 130
Query 49889 AGAAACTCATGGACCGCTGGTGGATTCAGCTCCCAAGCCCCGACCTGGCGTACTTGCCGC 49948
|| || ||| ||||||| ||| | || || || |||||||| ||| ||||
Sbjct 131 AGGAA---ATGCGCCGCTGGATGATCAACCTGCCCGACCAGGACCTGGCCTACCTGCCCG 187
Query 49949 AAGGCACACCGGAGTTCGCCGACTATCTGCGGGAGCTGCACTGGGCGCAGCGGTTC 50004
| |||| | | | | || ||||||| || | | || ||||||||||||| |||
Sbjct 188 AGGGCAGCCAGCACTACGGCGACTATGTGTTCGCGGTGGACTGGGCGCAGCGTTTC 243
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 186653645040100
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |