Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_023744.1 Length=60588 Score E Sequences producing significant alignments: (Bits) Value seq2955700 122 3e-23 seq2815131 82.4 3e-11 >seq2955700 Length=463 Score = 122 bits (134), Expect = 3e-23 Identities = 117/150 (78%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 49391 TGCCGTTCGTCCACCCGCATGTGGCGCTGATGCCCGACGCGCACGCCGGCAAGGGTTCAT 49450 ||||||| || | ||| | ||| ||||||| || | |||| ||||||||||| Sbjct 430 TGCCGTTTATCTTCAAGCACCTCGCGGTGATGCCGGATGTGCACCTGGGCAAGGGTTCGA 371 Query 49451 CGGTCGGCACCGTCATCCCGACTATCGACGCCGTGATCCCGGCCGCGGTGGGCGTGGACA 49510 | |||||| ||| ||||| || | | ||| | |||||||| |||||||||||||||| Sbjct 370 CCATCGGCAGCGTAATCCCCACGGTGGGCGCGATTATCCCGGCGGCGGTGGGCGTGGACA 311 Query 49511 TCGGCTGCGGGATGATCGCCGCCCGCACCA 49540 |||||||||||||||| ||||| ||||||| Sbjct 310 TCGGCTGCGGGATGATTGCCGCGCGCACCA 281 >seq2815131 Length=243 Score = 82.4 bits (90), Expect = 3e-11 Identities = 162/236 (69%), Gaps = 8/236 (3%) Strand=Plus/Plus Query 49773 CGGTAACCATTTCATCGAACTATGCCTGGACGAA-ACCGGCCGGGTGTGGCTGTTCCTGC 49831 ||| ||||| ||| |||| | ||||||||| | | | || | |||||| | | |||| Sbjct 12 CGGCAACCACTTCGTCGAGGTCTGCCTGGACCAGGAGCAGC-GCGTGTGGTTCATGCTGC 70 Query 49832 ACTCCGGGTCGCGTGGCGTCGGCAACAAGATCGCCCAAAAGCACATCAAGGTCGC---GC 49888 ||||||| ||||||||||| ||||| |||| | | |||| || | || || Sbjct 71 ACTCCGGTTCGCGTGGCGTAGGCAATGCCATCGGCACCTACTTCATCGAGCTGGCCAAGC 130 Query 49889 AGAAACTCATGGACCGCTGGTGGATTCAGCTCCCAAGCCCCGACCTGGCGTACTTGCCGC 49948 || || ||| ||||||| ||| | || || || |||||||| ||| |||| Sbjct 131 AGGAA---ATGCGCCGCTGGATGATCAACCTGCCCGACCAGGACCTGGCCTACCTGCCCG 187 Query 49949 AAGGCACACCGGAGTTCGCCGACTATCTGCGGGAGCTGCACTGGGCGCAGCGGTTC 50004 | |||| | | | | || ||||||| || | | || ||||||||||||| ||| Sbjct 188 AGGGCAGCCAGCACTACGGCGACTATGTGTTCGCGGTGGACTGGGCGCAGCGTTTC 243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 186653645040100