Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq118828 89.7 5e-13 >seq118828 Length=768 Score = 89.7 bits (98), Expect = 5e-13 Identities = 214/318 (67%), Gaps = 8/318 (3%) Strand=Plus/Minus Query 20205 ATGCCTTTTGTGTGATAGATCTTGGAGAAATTGTGCAGAGACATTTTAGATGGCTCAAGG 20264 ||||||| | ||| || || ||||| || || ||| |||| | |||||| | || | Sbjct 414 ATGCCTTCTATGTTGGGGAGCTGGGAGACGTTCTGAAGAAACATCTGAGATGGTTGAAAG 355 Query 20265 CTTTGCCTAAAGTCATTCCATTTTACGCCGTTAAGGCCCA-GAACGACGA--GAGAGTCC 20321 || | ||| |||| || ||||| || || || | | || | || || ||| Sbjct 354 CTCTTCCTCGGGTCACCCCCTTTTATGCAGTCAAATGCAATGATAGCAGAACGACAGTG- 296 Query 20322 TCAAGACCCTAGCTGCCCTTAAAACTGGCTTTGACTGTGCCAGTAAGCAGGAGATTCAGT 20381 ||||| || ||||| | || || |||||||||||||| ||| || || || | Sbjct 295 --AAGACACTCTCTGCCATCGGGACAGGATTTGACTGTGCCAGCAAGACTGAAATACAAT 238 Query 20382 TACTGCAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCTTGTAAGCAGC 20441 | |||| | ||| || || | | |||| |||||| | | ||| ||||| || || || Sbjct 237 TGGTGCAGAGTCTTGGGGTGCCCCCAGAGAGGATA-TCTATGCAAATCCGTG-AAACAAG 180 Query 20442 CTTCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTTGATAGTGAAG 20501 || || || | |||||| || | | |||| | ||||||||||||||||||||| Sbjct 179 TGTCTCAGATTAAGTATGCTGCCAATAACAGAGTCCAGATGATGACTTTTGATAGTGAAG 120 Query 20502 AAGAGCTTACCAAAATTG 20519 ||||| | ||| ||| Sbjct 119 TCGAGCTGATGAAAGTTG 102 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445649778942480