Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_024303.1
Length=144898
Score E
Sequences producing significant alignments: (Bits) Value
seq118828 89.7 5e-13
>seq118828
Length=768
Score = 89.7 bits (98), Expect = 5e-13
Identities = 214/318 (67%), Gaps = 8/318 (3%)
Strand=Plus/Minus
Query 20205 ATGCCTTTTGTGTGATAGATCTTGGAGAAATTGTGCAGAGACATTTTAGATGGCTCAAGG 20264
||||||| | ||| || || ||||| || || ||| |||| | |||||| | || |
Sbjct 414 ATGCCTTCTATGTTGGGGAGCTGGGAGACGTTCTGAAGAAACATCTGAGATGGTTGAAAG 355
Query 20265 CTTTGCCTAAAGTCATTCCATTTTACGCCGTTAAGGCCCA-GAACGACGA--GAGAGTCC 20321
|| | ||| |||| || ||||| || || || | | || | || || |||
Sbjct 354 CTCTTCCTCGGGTCACCCCCTTTTATGCAGTCAAATGCAATGATAGCAGAACGACAGTG- 296
Query 20322 TCAAGACCCTAGCTGCCCTTAAAACTGGCTTTGACTGTGCCAGTAAGCAGGAGATTCAGT 20381
||||| || ||||| | || || |||||||||||||| ||| || || || |
Sbjct 295 --AAGACACTCTCTGCCATCGGGACAGGATTTGACTGTGCCAGCAAGACTGAAATACAAT 238
Query 20382 TACTGCAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCTTGTAAGCAGC 20441
| |||| | ||| || || | | |||| |||||| | | ||| ||||| || || ||
Sbjct 237 TGGTGCAGAGTCTTGGGGTGCCCCCAGAGAGGATA-TCTATGCAAATCCGTG-AAACAAG 180
Query 20442 CTTCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTTGATAGTGAAG 20501
|| || || | |||||| || | | |||| | |||||||||||||||||||||
Sbjct 179 TGTCTCAGATTAAGTATGCTGCCAATAACAGAGTCCAGATGATGACTTTTGATAGTGAAG 120
Query 20502 AAGAGCTTACCAAAATTG 20519
||||| | ||| |||
Sbjct 119 TCGAGCTGATGAAAGTTG 102
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445649778942480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |