Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_024330.1
Length=37380
Score E
Sequences producing significant alignments: (Bits) Value
seq3084660 149 1e-31
seq3087822 129 1e-25
seq156999 105 2e-18
seq3088451 95.1 3e-15
>seq3084660
Length=3030
Score = 149 bits (164), Expect = 1e-31
Identities = 155/198 (78%), Gaps = 4/198 (2%)
Strand=Plus/Minus
Query 25044 CGATGCAGGAAGCAACCGGCAAGGCTGTTTCGGATACGGTCGCCGAGTTCTCCAAGCTGG 25103
||||||||||||| ||||||||||| || || ||||| |||||||| ||||||||||
Sbjct 2200 CGATGCAGGAAGCGACCGGCAAGGCCGTGAGCGAGACGGTTGCCGAGTTTTCCAAGCTGG 2141
Query 25104 CCGACGAACCGGTCAAAGCCTC-GCAGCAGCTCAACGAGAAATATCACTACCTGACCGCC 25162
| ||||| |||||||| || || || || ||| |||||| | || ||||||||||| |||
Sbjct 2140 CTGACGATCCGGTCAAGGCGTCCGCCGC-GCTAAACGAGCAGTACCACTACCTGACTGCC 2082
Query 25163 TCGGTTTACGAGCAGATAGCCGCCCTCGATCAGCAAGGCGAT-TCGCTGGGTGCCGCCCA 25221
||||||||| ||| || | || || || ||||||||||| |||| || | || |
Sbjct 2081 TCGGTTTACTCGCAAATCGTGGCTCTGGAGAAGCAAGGCGATCACGCT-GGCGTCGTGAA 2023
Query 25222 GCTGGCCATGGATGCCTA 25239
||| || | ||||||||
Sbjct 2022 GCTCGCGACCGATGCCTA 2005
>seq3087822
Length=6084
Score = 129 bits (142), Expect = 1e-25
Identities = 147/192 (77%), Gaps = 4/192 (2%)
Strand=Plus/Minus
Query 25044 CGATGCAGGAAGCAACCGGCAAGGCTGTTTCGGATACGGTCGCCGAGTTCTCCAAGCTGG 25103
|||||||||| || ||||||||||| || || |||||||| ||||||||||| ||||
Sbjct 5242 CGATGCAGGAGGCCACCGGCAAGGCCGTAAGCGAAACGGTCGCTGAGTTCTCCAAACTGG 5183
Query 25104 CCGACGAACCGGTCAAAGCCTC-GCAGCAGCTCAACGAGAAATATCACTACCTGACCGCC 25162
| ||||| |||||||| || || || || ||| || ||| |||| || |||||||| |||
Sbjct 5182 CTGACGATCCGGTCAAGGCATCCGCCGC-GCTTAATGAGCAATACCATTACCTGACTGCC 5124
Query 25163 TCGGTTTACGAGCAGATAGCCGCCCTCGATCAGCAAGGCGAT-TCGCTGGGTGCCGCCCA 25221
|||||||| ||| || | || || || || |||||| || ||| ||| || | |
Sbjct 5123 TCGGTTTATTCGCAAATTTCAGCACTGGAACAACAAGGCAATCACGC-GGGCGCTGTGAA 5065
Query 25222 GCTGGCCATGGA 25233
|||||| | |||
Sbjct 5064 GCTGGCGACGGA 5053
Score = 84.2 bits (92), Expect = 5e-12
Identities = 142/203 (70%), Gaps = 2/203 (1%)
Strand=Plus/Minus
Query 25991 GACCAGGTCACCGCAGCCTATGAGGGGGAAATCCAGGCGCTGGAGGCGCTGCGCGACAAA 26050
|||||||| || || ||||| |||| || ||| || ||||| || | | |||
Sbjct 4367 GACCAGGTGACGGCGGCCTACGAGGCCGAGATCACCGCACTGGAAGCCGTCAAGGGCAAG 4308
Query 26051 AGTTCCACCACGGCGGCCCAGCGCATCAGCCTGGACCAGAAGATCGCCGAGGCCAGGAAC 26110
| | || |||| || ||| ||||| |||||||||||||||||||| || | | |
Sbjct 4307 AAGACAACATCGGCCGCGCAGAGCATCCAGCTGGACCAGAAGATCGCCGACGC-ACGCGC 4249
Query 26111 AA-CATGGTCAAGGCGCAGAAGAAGGCCGACGCCGACCTGGAAGTCCTCCAGCTCAACGA 26169
| ||||||||||||||||||| | || ||| | | || ||||| || | |||||
Sbjct 4248 AGGCATGGTCAAGGCGCAGAAGGACGCTGACAGCCAGCTTGAAGTGCTGGCGACGAACGA 4189
Query 26170 ACAGGGGCGCCTGAAGAAACAGG 26192
||||||||| |||||||
Sbjct 4188 GACCGGGCGCCTGGCCAAACAGG 4166
>seq156999
Length=6365
Score = 105 bits (116), Expect = 2e-18
Identities = 175/248 (71%), Gaps = 5/248 (2%)
Strand=Plus/Plus
Query 10384 AACCTCGCGGCATCCGCAACAACAACCCCGGCAACATCGTCTGGTCGGCACGCAACAACT 10443
|||| |||||| | || ||| ||||||||||||||||| || || |||| | |
Sbjct 3934 AACC-CGCGGCGTTCGTAACCGCAACCCCGGCAACATCGACTACAACTCAGCCAACCAGT 3992
Query 10444 GGCAGGGCCAGCTCCCGCACAACCCGAAGGTCGAGCCGCGTTTCGCCCGTTTTGATACCG 10503
|||| ||||||||| || | | ||| | | ||| ||| |||||||| ||||||||
Sbjct 3993 GGCAAGGCCAGCTCAAGCCCGATCCGTCGCTTGAGAAGCGGTTCGCCCGGTTTGATACGC 4052
Query 10504 CACATAACGGAATCCGCGCCTTGGCAAAGCTGCTGCTGAACTATC-GCA-AGGTCCACGG 10561
| | ||||| ||||||||| ||| ||| ||||||||| ||| | ||| | | || ||
Sbjct 4053 CCGAGAACGGTATCCGCGCCCTGGGCAAGTTGCTGCTGACCTACCAGCATAAG--CATGG 4110
Query 10562 CCTGCGCACCGTCGAATCGTTGATCGCACGCTGGGCGCCGTCCAACGAGAACGACACCCG 10621
||| || || | | | ||| |||||||| || || ||||||||||||
Sbjct 4111 GCTGAAGACGGTGAAGGCCATTATCAGCCGCTGGGCACCATCGGTAGAGAACGACACCGC 4170
Query 10622 CGCATATG 10629
||| ||||
Sbjct 4171 CGCCTATG 4178
>seq3088451
Length=13260
Score = 95.1 bits (104), Expect = 3e-15
Identities = 207/300 (69%), Gaps = 10/300 (3%)
Strand=Plus/Plus
Query 25895 AACGCCGAGCAGAAGCTCCAGGCGCAGCAGCGCGCCGGCCTGCTGA-GCTATGCGGACTA 25953
|||||| || || | || ||||||||||| || ||| || | ||| | |||||||
Sbjct 7376 AACGCCCAGAAGGAACTGGAGGCGCAGCAGAAGGCTGGCGTGGTTTCGCTGT-CGGACTA 7434
Query 25954 TGTCGCGCAACGCGGCGAAC-TGATCAGCCAGAACAAGGACCAGGTCACCGCAGCCTATG 26012
| |||||| | ||| | |||||| |||| | |||||| | || || || || ||
Sbjct 7435 CGCAAAGCAACG-GTCGACCCTGATCAACCAGGAAAAGGACGATGTGACGGCCGCGTACC 7493
Query 26013 AGGGGGAAATCCAGGCGCTGGAGGCG--CTGCGCGACAAAAGTTCCACCACGGCGGCCCA 26070
||| || ||| | || ||||||||| | || | |||| ||| ||| |||| ||
Sbjct 7494 AGGCTGAGATCGATGCACTGGAGGCGGCCAAGGCCAAGAAAGG--CACAACGACGGCTCA 7551
Query 26071 GCGCATCAGCCTGGACCAGAAGATCGCCGAGGCCAGGAACAACATGGTCAAGGCGCAGAA 26130
| | ||| |||||||| ||||||||||| || || | ||||||||||| |||||
Sbjct 7552 GAGTATCCAGCTGGACCAAAAGATCGCCGATGCACGGCAGGGGATGGTCAAGGCTCAGAA 7611
Query 26131 GAAGGCCGACGCCGACCTGGAAGTC-CTCCAGCTCAACGAACAGGGGCGCCTGAAGAAAC 26189
| | || ||| | | ||| ||| | || | |||||| | || |||||| || |||
Sbjct 7612 GGATGCTGACAGCCAGCTGACCGTCATTGCAAC-GAACGAAAAAGGCCGCCTGGAGCAAC 7670
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 115111815245044
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |