Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_024354.1 Length=149162 Score E Sequences producing significant alignments: (Bits) Value seq3085140 105 6e-18 >seq3085140 Length=3208 Score = 105 bits (116), Expect = 6e-18 Identities = 201/296 (68%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 111914 GCGATCGCATTAATGGTCAAGTCCCGGCGGGCCAAATCCTCTTCGATGGTCACATCTGGG 111973 || || ||||| ||||||| ||| || || || || ||||| | || || || ||| Sbjct 1967 GCCATGGCATTGATGGTCAGGTCGCGACGAATCAGGTCTTCTTCCAGCGTGACCTCGGGG 2026 Query 111974 CTGAACATCACCTCGAAATCGTGGTATCCTGCGCCAGTTGAACGCTCGGTACGGGCCAGG 112033 ||| | | |||| || ||| || |||| | || ||||| ||||||||| Sbjct 2027 CTGGCGTGAAACACGAAGCCGCCGTAACCCCTGCCACTCTTCCGTTCGGTGCGGGCCAGG 2086 Query 112034 GCGTACTCTTCCTTGGTCTCAGGATGCAGGTAAACTGGGAATGCGGCACCGACTTGCTCG 112093 ||||| || || | | | || | |||| | || ||||| | || ||||| ||| | Sbjct 2087 GCGTATTCATCGCCGTTTTTCGGGTCCAGGAACACGGGGAAGTCAGCGCCGACCGGCTTG 2146 Query 112094 AAGCCGAGTGCCATCATCTCTTCGTGGGTGGAGCCGACCACAACGTAGTCACGGTCTTTG 112153 ||||| |||| |||||||||| ||||| |||||| || ||| ||| ||| || Sbjct 2147 AAGCCTTTGGCCAGCATCTCTTCGGTGGTGGCGCCGACGACGACGCGGTCGATGTCGGTG 2206 Query 112154 CTCTCAACACCCATCAGTTCATCGCGGACCGCGCCGCCGACCAGATAGATTTTCAT 112209 || | |||| ||| ||| || |||||||||||||| ||||||||||| Sbjct 2207 ACCTTGATGCCCAGCAGGCGATCACGCACCGCGCCGCCGACTTTGTAGATTTTCAT 2262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 458767802506320