Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_024369.2 Length=41569 Score E Sequences producing significant alignments: (Bits) Value seq3087627 138 3e-28 seq2951953 84.2 6e-12 >seq3087627 Length=5558 Score = 138 bits (152), Expect = 3e-28 Identities = 183/254 (72%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 28451 GGAGAGCCTTGGTTCATTGCTAAGGATGTTGCTGATATTCTTGGTTACGTAAACACATCA 28510 ||||||||||||||||| || |||||| | || || | || || ||| ||||| || Sbjct 765 GGAGAGCCTTGGTTCATCGCCAAGGATATCGCCGAAACCCTCGGCTACTCCAACACGTCG 706 Query 28511 AAAGCAGTTAACACTCACTGCAAAAACGTGGAAACCTGTCCTACCGAAATGGGAGGTCAG 28570 ||||| | || |||||||||| || ||||| | ||||||||||||||||||| Sbjct 705 AAAGCGATCAATGTTCACTGCAAAGCGGTCAGTACCTGCCATACCGAAATGGGAGGTCAG 646 Query 28571 GTAAGAAGAGTTCAGATTATCTCTGAGCGTGATGTTTACCGTCTGGTGATGCGCTCAACT 28630 || | ||| || || ||| ||||||| ||| | |||||||| |||||| || | Sbjct 645 GTCCGCGCAGTGCAAATCATCCCTGAGCGCGATCTCTACCGTCTTGTGATGAAGTCCAAG 586 Query 28631 CTTCCAGAAGCGGAAAAATTTGAAGAATGGGTAGTAGGCGAAGTTCTTCCATCAATCCGA 28690 ||||| | || || | || ||||| ||||| || ||| | || || || | || ||| Sbjct 585 CTTCCGGCTGCTGAGCAGTTCGAAGAGTGGGTGGTGGGCCAGGTGCTGCCGACCATTCGA 526 Query 28691 AAAACTGGCGCTTA 28704 || || ||| |||| Sbjct 525 AAGACCGGCTCTTA 512 >seq2951953 Length=451 Score = 84.2 bits (92), Expect = 6e-12 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 38320 GATAAGCAAACCGGACAGCCAAAAGAGAAAACAGAGTGGCACCGAGTTACTTTGTTTGGG 38379 || ||||| ||| ||| ||||||||||| ||||||||||| || | ||||| || Sbjct 399 GACAAGCAGACCAACGAGCGCAAAGAGAAAACCGAGTGGCACCGCGTGTCGTTGTTCGGC 340 Query 38380 AAGCTGGCTGAAGTTGCTGGCGAATACCTTCGAAAAGGATCTCATGTTTATATTGAAGGC 38439 ||| | || || | ||||| || ||||| || ||||| || || || || || |||||| Sbjct 339 AAGGTTGCAGAGATCGCTGGTGAGTACCTGCGCAAAGGTTCGCAGGTCTACATCGAAGGC 280 Query 38440 CAGCTTGAAAC 38450 |||| |||| Sbjct 279 AAGCTGCAAAC 269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128024979887042