Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq300236 145 1e-29 seq155098 143 5e-29 seq185925 138 2e-27 seq66256 136 7e-27 seq87282 127 4e-24 seq2709013 114 2e-20 seq2278510 105 1e-17 seq136426 105 1e-17 seq2452699 104 4e-17 seq2409662 104 4e-17 seq234195 104 4e-17 seq213981 100 5e-16 seq1809803 98.7 2e-15 seq157041 96.9 7e-15 seq137578 95.1 2e-14 seq84207 91.5 3e-13 seq3046829 87.8 3e-12 >seq300236 Length=7644 Score = 145 bits (160), Expect = 1e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||| | || || || | ||||||||| || |||||||| || || || ||||| Sbjct 7640 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAA 7581 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || ||||| || |||||||| | || || || |||||||| Sbjct 7580 AGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGAGGG 7521 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || || || ||||| ||||| | || ||||| ||||| || ||| | || || || Sbjct 7520 ATGCCCTCTTTTTCTTGTATCTTCCCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 7461 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||| ||| || || || || || | ||||||||||| ||||||||| Sbjct 7460 TCCAGAGTGATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCATT 7413 >seq155098 Length=7669 Score = 143 bits (158), Expect = 5e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 |||| || ||||| || || || || || | || ||||| | | | | | ||||| Sbjct 7229 ACTAGATGAAGAGTGGACTCCTTTTGAATGCTGTAGTCAGACAAAGTACGTTCATCTTCC 7288 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 ||||| || ||||||||||| ||| |||| || || ||||| |||||||||||||| || Sbjct 7289 AGTTGCTTGCCAGCAAAGATCAGTATTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGG 7348 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 ||||| | ||||||||||| || ||||| ||||| || || | ||| || ||||| Sbjct 7349 ATCTTGGTCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGATGGTCTTC 7408 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCAT 82810 || |||| ||||| ||||| |||||||| Sbjct 7409 CCCGTCAGGGTCTTCACAAAAATCTGCAT 7437 >seq185925 Length=7279 Score = 138 bits (152), Expect = 2e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 |||| || ||||| || || || || || || || ||||| | | | || ||||| Sbjct 308 ACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCATCTTCC 367 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 ||||| || |||||| |||| ||||||| || || ||||| |||||||||||||| || Sbjct 368 AGTTGCTTGCCAGCACAGATCTGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGG 427 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781 ||||| || ||||||||||| || ||||| ||||| || || | ||| || ||||| Sbjct 428 ATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCGACCTCAAGAGTGATGGTCTTC 487 Query 82782 CCTGTCAACGTCTTTACAAATATCTGCAT 82810 || |||| ||||| | || |||||||| Sbjct 488 CCCGTCAGGGTCTTCATGAAAATCTGCAT 516 >seq66256 Length=6617 Score = 136 bits (150), Expect = 7e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || |||| | | || || | |||||| || | |||||||| || || |||||||| Sbjct 1643 CCACCCCTCAGATGAAGGACCAGGTGCAGGGTCTACTCTTTCTGGATGTTGTAATCAGAA 1584 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || ||||| || || || | |||||||| || || || || || || || Sbjct 1583 AGAGTGCGGCCATCTTCCAGCTGCTTGCTGGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 1524 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||||||||| || ||||| || || || || || || || ||| | || ||||| Sbjct 1523 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCTACC 1464 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||| || || |||||||| |||| ||||| || || || |||||| Sbjct 1463 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATT 1416 >seq87282 Length=9775 Score = 127 bits (140), Expect = 4e-24 Identities = 123/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 |||||||| ||||| || |||||| |||| ||||||||||| || ||||| |||||| Sbjct 2590 CCGTCTTCCAGTTGCTTGCCAGCATAGATCAGTCTTTGTTGGTCAGGAGGAGCTCCTTCT 2531 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 ||||| || ||||| || ||||||||||| || ||||| || ||||| || | ||| Sbjct 2530 TTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCTACCTCAAGAGTG 2471 Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| |||||| ||||| | || |||||||| Sbjct 2470 ATGGTCTTCACTGTCAGGGTCTTCATGAAAATCTGCAT 2433 >seq2709013 Length=200 Score = 114 bits (126), Expect = 2e-20 Identities = 132/178 (74%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661 |||| || |||| || || || || || || || ||||| | | | | || ||||| Sbjct 23 ACTAGATGAAGAGGGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCC 82 Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721 ||||| || ||||||| ||| |||||||| || || ||||| |||||||||||| | || Sbjct 83 AGTTGCTTGCCAGCAATGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTACCCTGG 142 Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCT 82779 ||||| || ||||||||||| || ||||| ||||| | || | ||| || |||| Sbjct 143 ATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGTTCAAGCTCGAGAGTGATGGTCT 200 >seq2278510 Length=135 Score = 105 bits (116), Expect = 1e-17 Identities = 103/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 82612 GAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTC 82671 |||| || || || || || || || ||||| | | | || ||||| ||||| || | Sbjct 1 GAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCATCTTCCAGTTGCTTGC 60 Query 82672 CAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTT 82731 |||||||||| ||||||| || || ||||| |||||||||||||| || ||||| || | Sbjct 61 CAGCAAAGATCTGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCT 120 Query 82732 TTACATTTTCAAT 82744 |||||||||| || Sbjct 121 TTACATTTTCTAT 133 >seq136426 Length=23094 Score = 105 bits (116), Expect = 1e-17 Identities = 163/230 (71%), Gaps = 7/230 (3%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 |||||| ||||| ||||| || ||||||||||| || |||||||| || || || ||||| Sbjct 21302 ACCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGA 21243 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGG--A 82700 || | || ||||| || ||||| || |||||||| | || || || || || Sbjct 21242 CAGGGTGTGCCCATCTTCCAGCTGTTTCCCTGCAAAGATCAACCTCTGCTGGTCCGGGTG 21183 Query 82701 GGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCT 82760 || | | || ||||| ||||| || || |||| || || | ||| | || || Sbjct 21182 GGGGGTGC--CC---TCTTGGATCTTGGCCTTGGCATTCTCGATGATGTCACTGGGCTCC 21128 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || |||| || || ||||| || ||||| ||||| | || |||||||| Sbjct 21127 ACCTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCATGAAGATCTGCAT 21078 >seq2452699 Length=160 Score = 104 bits (114), Expect = 4e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 82674 GCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTT 82733 |||||||| || || || || || || || || ||||||||||| || ||||| || || Sbjct 159 GCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 100 Query 82734 ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTC 82793 ||||| || || || ||| | || || || |||| ||| || |||||||| |||| ||| Sbjct 99 ACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTGCCGGTCAGGGTC 40 Query 82794 TTTACAAATATCTGCAT 82810 || || || |||||||| Sbjct 39 TTCACGAAGATCTGCAT 23 >seq2409662 Length=152 Score = 104 bits (114), Expect = 4e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || |||| ||| || || | |||||| || || |||||||| || || |||||||| Sbjct 1 CCACCCCTCAGACGAAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 60 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || ||||| || || || || |||||||| || || || || || || || Sbjct 61 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 120 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTAC 82735 || ||||||||||| || ||||| || || || Sbjct 121 ATGCCTTCCTTATCCTGGATCTTGGCCTTCAC 152 >seq234195 Length=9622 Score = 104 bits (114), Expect = 4e-17 Identities = 118/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| |||| |||||||||| ||| |||||||| || || ||||| | |||||||||| Sbjct 1828 TCTTCCAGTTCCTTTCCAGCAATGATCAGTCTTTGCTGGTCAGGAGGAACTCCTTCCTTA 1769 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTAT-CATTAGGTTCTACTTCCAAAGTTAT 82774 || || ||||| || ||||||||||| ||| ||| || || || |||| | || || Sbjct 1768 TCCTGGATCTTGGCCTTTACATTTTCTATCATATCCAAGAGCTT-GACTTTGAGAGAGAT 1710 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||||||| ||||| | || | |||||| Sbjct 1709 GCTCATCCCTGTCAGGGTCTTCATGAAAACCTGCAT 1674 >seq213981 Length=2920 Score = 100 bits (110), Expect = 5e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 60155 TGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATACTTAGG 60214 |||||||||| |||||||||||| || || || || || ||||||||||| || || ||| Sbjct 1325 TGGTGGTACTTTATATCTAAAGGAATTGAGTATTTGGACACGGTGTTTTTTATCCTGAGG 1266 Query 60215 AAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTTACTTTA 60274 || || || || || |||| | ||||| |||||||| | ||| ||||| || || Sbjct 1265 AAGAAAAACAACCAAGTCTCTTTTCTTCACGTGTATCATCACTGTACCATGTTCACCTTG 1206 Query 60275 GGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCA 60309 | ||| | || ||||| ||| | | ||||| || Sbjct 1205 TGGTGGATCGGAATTAAGTGGGTCCCAGGAGGACA 1171 >seq1809803 Length=127 Score = 98.7 bits (108), Expect = 2e-15 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 82612 GAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTC 82671 |||| || || || || || || || ||||| | | | || ||||| ||||| || | Sbjct 1 GAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCATCTTCCAGTTGCTTGC 60 Query 82672 CAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTT 82731 ||| |||||| |||||||| || || ||||| |||||||||||||| || ||||| || | Sbjct 61 CAGAAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCT 120 Query 82732 TTACATT 82738 ||||||| Sbjct 121 TTACATT 127 >seq157041 Length=23291 Score = 96.9 bits (106), Expect = 7e-15 Identities = 71/83 (86%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 ||||| ||||| || ||||||||||| |||||||| || || ||||| |||||||||||| Sbjct 5337 TCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTA 5396 Query 82716 TCTTGAATCTTTGCTTTTACATT 82738 || || ||||| || |||||||| Sbjct 5397 TCCTGGATCTTGGCCTTTACATT 5419 >seq137578 Length=33193 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || || || ||||| || ||||||||| | |||||||| ||||| | ||| |||||||| Sbjct 12922 CCATCGTCCAGTTGCTTGCCAGCAAAGGTCAGTCTTTGCTGATCGGAAGGAATTCCTTCG 12863 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772 || ||||| ||||| || ||||||||||| || | ||| |||| |||| ||| Sbjct 12862 TTCTCTTGGATCTTGGCCTTTACATTTTCTATTGCATCTGAGGGTTTGACTTTGGGAGTG 12803 Query 82773 ATCGTCTTGCCTGTCAACGTCT 82794 || | ||| | ||||| |||| Sbjct 12802 ATGGACTTCCTTGTCAGGGTCT 12781 >seq84207 Length=16436 Score = 91.5 bits (100), Expect = 3e-13 Identities = 141/202 (70%), Gaps = 6/202 (3%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||| | || | || || || || ||||| | | | | || ||||| ||||| Sbjct 229 TGAAGAGTGAACTCCCTTTGAATGTTGTAGTCAGACAAAGTACATCCATCTTCCAGTTGC 170 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || |||||||||| | |||||| || || ||||| |||||||||| | ||||| Sbjct 169 TTGCCAGCAAAGACTGATCTTTGCTGGTCAGGAGGAATTCCTTCCT------GGATCTTG 116 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || ||||||||||| | |||| || | || | | || || ||||| || ||| Sbjct 115 GCCTTTACATTTTCTGTGGTATTCGAGGGCTTGACCTTGAGTGTGATGGTCTTCCCCGTC 56 Query 82788 AACGTCTTTACAAATATCTGCA 82809 | ||||| ||||| ||||||| Sbjct 55 AGGGTCTTCACAAAAATCTGCA 34 >seq3046829 Length=1098 Score = 87.8 bits (96), Expect = 3e-12 Identities = 72/88 (82%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || ||||| ||||| || ||||||||||| ||||||||||| | ||||| ||| |||| Sbjct 906 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGTTGGCCAGGAGGAGTTCTTTCC 847 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTT 82740 ||||| || ||||| || ||||| |||| Sbjct 846 TTATCCTGGATCTTGGCCTTTACTTTTT 819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943925475118320