Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq300236 145 1e-29
seq155098 143 5e-29
seq185925 138 2e-27
seq66256 136 7e-27
seq87282 127 4e-24
seq2709013 114 2e-20
seq2278510 105 1e-17
seq136426 105 1e-17
seq2452699 104 4e-17
seq2409662 104 4e-17
seq234195 104 4e-17
seq213981 100 5e-16
seq1809803 98.7 2e-15
seq157041 96.9 7e-15
seq137578 95.1 2e-14
seq84207 91.5 3e-13
seq3046829 87.8 3e-12
>seq300236
Length=7644
Score = 145 bits (160), Expect = 1e-29
Identities = 169/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|| ||||| | || || || | ||||||||| || |||||||| || || || |||||
Sbjct 7640 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAA 7581
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
|| | | || ||||| || ||||| || |||||||| | || || || ||||||||
Sbjct 7580 AGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGAGGG 7521
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| || || || ||||| ||||| | || ||||| ||||| || ||| | || || ||
Sbjct 7520 ATGCCCTCTTTTTCTTGTATCTTCCCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 7461
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
|||| ||| || || || || || | ||||||||||| |||||||||
Sbjct 7460 TCCAGAGTGATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCATT 7413
>seq155098
Length=7669
Score = 143 bits (158), Expect = 5e-29
Identities = 157/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661
|||| || ||||| || || || || || | || ||||| | | | | | |||||
Sbjct 7229 ACTAGATGAAGAGTGGACTCCTTTTGAATGCTGTAGTCAGACAAAGTACGTTCATCTTCC 7288
Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721
||||| || ||||||||||| ||| |||| || || ||||| |||||||||||||| ||
Sbjct 7289 AGTTGCTTGCCAGCAAAGATCAGTATTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGG 7348
Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781
||||| | ||||||||||| || ||||| ||||| || || | ||| || |||||
Sbjct 7349 ATCTTGGTCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGATGGTCTTC 7408
Query 82782 CCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| |||| ||||| ||||| ||||||||
Sbjct 7409 CCCGTCAGGGTCTTCACAAAAATCTGCAT 7437
>seq185925
Length=7279
Score = 138 bits (152), Expect = 2e-27
Identities = 156/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661
|||| || ||||| || || || || || || || ||||| | | | || |||||
Sbjct 308 ACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCATCTTCC 367
Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721
||||| || |||||| |||| ||||||| || || ||||| |||||||||||||| ||
Sbjct 368 AGTTGCTTGCCAGCACAGATCTGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGG 427
Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTG 82781
||||| || ||||||||||| || ||||| ||||| || || | ||| || |||||
Sbjct 428 ATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCGACCTCAAGAGTGATGGTCTTC 487
Query 82782 CCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| |||| ||||| | || ||||||||
Sbjct 488 CCCGTCAGGGTCTTCATGAAAATCTGCAT 516
>seq66256
Length=6617
Score = 136 bits (150), Expect = 7e-27
Identities = 167/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|| || |||| | | || || | |||||| || | |||||||| || || ||||||||
Sbjct 1643 CCACCCCTCAGATGAAGGACCAGGTGCAGGGTCTACTCTTTCTGGATGTTGTAATCAGAA 1584
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
||| | | || ||||| || || || | |||||||| || || || || || || ||
Sbjct 1583 AGAGTGCGGCCATCTTCCAGCTGCTTGCTGGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 1524
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| ||||||||||| || ||||| || || || || || || || ||| | || |||||
Sbjct 1523 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCTACC 1464
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
|||| || || |||||||| |||| ||||| || || || ||||||
Sbjct 1463 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATT 1416
>seq87282
Length=9775
Score = 127 bits (140), Expect = 4e-24
Identities = 123/158 (78%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712
|||||||| ||||| || |||||| |||| ||||||||||| || ||||| ||||||
Sbjct 2590 CCGTCTTCCAGTTGCTTGCCAGCATAGATCAGTCTTTGTTGGTCAGGAGGAGCTCCTTCT 2531
Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772
||||| || ||||| || ||||||||||| || ||||| || ||||| || | |||
Sbjct 2530 TTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCTACCTCAAGAGTG 2471
Query 82773 ATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| ||||| |||||| ||||| | || ||||||||
Sbjct 2470 ATGGTCTTCACTGTCAGGGTCTTCATGAAAATCTGCAT 2433
>seq2709013
Length=200
Score = 114 bits (126), Expect = 2e-20
Identities = 132/178 (74%), Gaps = 0/178 (0%)
Strand=Plus/Plus
Query 82602 ACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCT 82661
|||| || |||| || || || || || || || ||||| | | | | || |||||
Sbjct 23 ACTAGATGAAGAGGGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCC 82
Query 82662 AGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGA 82721
||||| || ||||||| ||| |||||||| || || ||||| |||||||||||| | ||
Sbjct 83 AGTTGCTTGCCAGCAATGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTACCCTGG 142
Query 82722 ATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCT 82779
||||| || ||||||||||| || ||||| ||||| | || | ||| || ||||
Sbjct 143 ATCTTGGCCTTTACATTTTCTATTGTATCTGAGGGTTCAAGCTCGAGAGTGATGGTCT 200
>seq2278510
Length=135
Score = 105 bits (116), Expect = 1e-17
Identities = 103/133 (77%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 82612 GAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTC 82671
|||| || || || || || || || ||||| | | | || ||||| ||||| || |
Sbjct 1 GAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCATCTTCCAGTTGCTTGC 60
Query 82672 CAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTT 82731
|||||||||| ||||||| || || ||||| |||||||||||||| || ||||| || |
Sbjct 61 CAGCAAAGATCTGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCT 120
Query 82732 TTACATTTTCAAT 82744
|||||||||| ||
Sbjct 121 TTACATTTTCTAT 133
>seq136426
Length=23094
Score = 105 bits (116), Expect = 1e-17
Identities = 163/230 (71%), Gaps = 7/230 (3%)
Strand=Plus/Minus
Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642
|||||| ||||| ||||| || ||||||||||| || |||||||| || || || |||||
Sbjct 21302 ACCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGA 21243
Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGG--A 82700
|| | || ||||| || ||||| || |||||||| | || || || || ||
Sbjct 21242 CAGGGTGTGCCCATCTTCCAGCTGTTTCCCTGCAAAGATCAACCTCTGCTGGTCCGGGTG 21183
Query 82701 GGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCT 82760
|| | | || ||||| ||||| || || |||| || || | ||| | || ||
Sbjct 21182 GGGGGTGC--CC---TCTTGGATCTTGGCCTTGGCATTCTCGATGATGTCACTGGGCTCC 21128
Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| |||| || || ||||| || ||||| ||||| | || ||||||||
Sbjct 21127 ACCTCCAGGGTGATGGTCTTACCAGTCAAGGTCTTCATGAAGATCTGCAT 21078
>seq2452699
Length=160
Score = 104 bits (114), Expect = 4e-17
Identities = 105/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 82674 GCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTT 82733
|||||||| || || || || || || || || ||||||||||| || ||||| || ||
Sbjct 159 GCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTC 100
Query 82734 ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTC 82793
||||| || || || ||| | || || || |||| ||| || |||||||| |||| |||
Sbjct 99 ACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTGCCGGTCAGGGTC 40
Query 82794 TTTACAAATATCTGCAT 82810
|| || || ||||||||
Sbjct 39 TTCACGAAGATCTGCAT 23
>seq2409662
Length=152
Score = 104 bits (114), Expect = 4e-17
Identities = 114/152 (75%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|| || |||| ||| || || | |||||| || || |||||||| || || ||||||||
Sbjct 1 CCACCCCTCAGACGAAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 60
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
||| | | || ||||| || || || || |||||||| || || || || || || ||
Sbjct 61 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 120
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTAC 82735
|| ||||||||||| || ||||| || || ||
Sbjct 121 ATGCCTTCCTTATCCTGGATCTTGGCCTTCAC 152
>seq234195
Length=9622
Score = 104 bits (114), Expect = 4e-17
Identities = 118/156 (76%), Gaps = 2/156 (1%)
Strand=Plus/Minus
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
||||| |||| |||||||||| ||| |||||||| || || ||||| | ||||||||||
Sbjct 1828 TCTTCCAGTTCCTTTCCAGCAATGATCAGTCTTTGCTGGTCAGGAGGAACTCCTTCCTTA 1769
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTAT-CATTAGGTTCTACTTCCAAAGTTAT 82774
|| || ||||| || ||||||||||| ||| ||| || || || |||| | || ||
Sbjct 1768 TCCTGGATCTTGGCCTTTACATTTTCTATCATATCCAAGAGCTT-GACTTTGAGAGAGAT 1710
Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| | ||||||| ||||| | || | ||||||
Sbjct 1709 GCTCATCCCTGTCAGGGTCTTCATGAAAACCTGCAT 1674
>seq213981
Length=2920
Score = 100 bits (110), Expect = 5e-16
Identities = 115/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 60155 TGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATACTTAGG 60214
|||||||||| |||||||||||| || || || || || ||||||||||| || || |||
Sbjct 1325 TGGTGGTACTTTATATCTAAAGGAATTGAGTATTTGGACACGGTGTTTTTTATCCTGAGG 1266
Query 60215 AAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTTACTTTA 60274
|| || || || || |||| | ||||| |||||||| | ||| ||||| || ||
Sbjct 1265 AAGAAAAACAACCAAGTCTCTTTTCTTCACGTGTATCATCACTGTACCATGTTCACCTTG 1206
Query 60275 GGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCA 60309
| ||| | || ||||| ||| | | ||||| ||
Sbjct 1205 TGGTGGATCGGAATTAAGTGGGTCCCAGGAGGACA 1171
>seq1809803
Length=127
Score = 98.7 bits (108), Expect = 2e-15
Identities = 98/127 (77%), Gaps = 0/127 (0%)
Strand=Plus/Plus
Query 82612 GAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTC 82671
|||| || || || || || || || ||||| | | | || ||||| ||||| || |
Sbjct 1 GAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCATCTTCCAGTTGCTTGC 60
Query 82672 CAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTT 82731
||| |||||| |||||||| || || ||||| |||||||||||||| || ||||| || |
Sbjct 61 CAGAAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCT 120
Query 82732 TTACATT 82738
|||||||
Sbjct 121 TTACATT 127
>seq157041
Length=23291
Score = 96.9 bits (106), Expect = 7e-15
Identities = 71/83 (86%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
||||| ||||| || ||||||||||| |||||||| || || ||||| ||||||||||||
Sbjct 5337 TCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTA 5396
Query 82716 TCTTGAATCTTTGCTTTTACATT 82738
|| || ||||| || ||||||||
Sbjct 5397 TCCTGGATCTTGGCCTTTACATT 5419
>seq137578
Length=33193
Score = 95.1 bits (104), Expect = 2e-14
Identities = 106/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712
|| || || ||||| || ||||||||| | |||||||| ||||| | ||| ||||||||
Sbjct 12922 CCATCGTCCAGTTGCTTGCCAGCAAAGGTCAGTCTTTGCTGATCGGAAGGAATTCCTTCG 12863
Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTT 82772
|| ||||| ||||| || ||||||||||| || | ||| |||| |||| |||
Sbjct 12862 TTCTCTTGGATCTTGGCCTTTACATTTTCTATTGCATCTGAGGGTTTGACTTTGGGAGTG 12803
Query 82773 ATCGTCTTGCCTGTCAACGTCT 82794
|| | ||| | ||||| ||||
Sbjct 12802 ATGGACTTCCTTGTCAGGGTCT 12781
>seq84207
Length=16436
Score = 91.5 bits (100), Expect = 3e-13
Identities = 141/202 (70%), Gaps = 6/202 (3%)
Strand=Plus/Minus
Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667
|| ||||| | || | || || || || ||||| | | | | || ||||| |||||
Sbjct 229 TGAAGAGTGAACTCCCTTTGAATGTTGTAGTCAGACAAAGTACATCCATCTTCCAGTTGC 170
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| |||||||||| | |||||| || || ||||| |||||||||| | |||||
Sbjct 169 TTGCCAGCAAAGACTGATCTTTGCTGGTCAGGAGGAATTCCTTCCT------GGATCTTG 116
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
|| ||||||||||| | |||| || | || | | || || ||||| || |||
Sbjct 115 GCCTTTACATTTTCTGTGGTATTCGAGGGCTTGACCTTGAGTGTGATGGTCTTCCCCGTC 56
Query 82788 AACGTCTTTACAAATATCTGCA 82809
| ||||| ||||| |||||||
Sbjct 55 AGGGTCTTCACAAAAATCTGCA 34
>seq3046829
Length=1098
Score = 87.8 bits (96), Expect = 3e-12
Identities = 72/88 (82%), Gaps = 0/88 (0%)
Strand=Plus/Minus
Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712
|| ||||| ||||| || ||||||||||| ||||||||||| | ||||| ||| ||||
Sbjct 906 CCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGTTGGCCAGGAGGAGTTCTTTCC 847
Query 82713 TTATCTTGAATCTTTGCTTTTACATTTT 82740
||||| || ||||| || ||||| ||||
Sbjct 846 TTATCCTGGATCTTGGCCTTTACTTTTT 819
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 943925475118320
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