Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_024450.1
Length=204054
Score E
Sequences producing significant alignments: (Bits) Value
seq320552 109 7e-19
seq151921 109 7e-19
seq166666 107 2e-18
seq354556 105 8e-18
seq305004 105 8e-18
seq197299 105 8e-18
seq52516 104 3e-17
seq51356 91.5 2e-13
seq17235 91.5 2e-13
seq363789 84.2 3e-11
>seq320552
Length=16403
Score = 109 bits (120), Expect = 7e-19
Identities = 72/80 (90%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 8653 CTTATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTC 8712
|| ||||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||
Sbjct 13668 CTCATTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTC 13727
Query 8713 GATTCCCCGACGAGGAGCAG 8732
|||||||||||| |||| ||
Sbjct 13728 GATTCCCCGACGGGGAGGAG 13747
Score = 102 bits (112), Expect = 1e-16
Identities = 69/76 (91%), Gaps = 1/76 (1%)
Strand=Plus/Plus
Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785
|| ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||
Sbjct 13670 CATTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 13729
Query 11786 TTCCCCGACGAGGAGG 11801
|||||||||| |||||
Sbjct 13730 TTCCCCGACGGGGAGG 13745
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 13744 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 13685
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 13684 TACTAACGAGGA 13673
>seq151921
Length=25545
Score = 109 bits (120), Expect = 7e-19
Identities = 69/75 (92%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 8655 TATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 8714
|||||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||
Sbjct 21567 TATTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 21626
Query 8715 TTCCCCGACGAGGAG 8729
|||||||||| ||||
Sbjct 21627 TTCCCCGACGGGGAG 21641
Score = 102 bits (112), Expect = 1e-16
Identities = 67/73 (92%), Gaps = 1/73 (1%)
Strand=Plus/Plus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 21570 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 21629
Query 11789 CCCGACGAGGAGG 11801
||||||| |||||
Sbjct 21630 CCCGACGGGGAGG 21642
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 21641 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 21582
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 21581 TACTAACGAGGA 21570
>seq166666
Length=4101
Score = 107 bits (118), Expect = 2e-18
Identities = 68/74 (92%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 8656 ATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 8715
||||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||
Sbjct 631 ATTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 690
Query 8716 TCCCCGACGAGGAG 8729
||||||||| ||||
Sbjct 691 TCCCCGACGGGGAG 704
Score = 102 bits (112), Expect = 1e-16
Identities = 69/76 (91%), Gaps = 1/76 (1%)
Strand=Plus/Plus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 633 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 692
Query 11789 CCCGACGAGGAGGGAG 11804
||||||| ||||| ||
Sbjct 693 CCCGACGGGGAGGCAG 708
Score = 95.1 bits (104), Expect = 2e-14
Identities = 66/75 (88%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 704 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 645
Query 139413 TACTAACGAGGATTT 139427
|||||||||||| ||
Sbjct 644 TACTAACGAGGAATT 630
>seq354556
Length=2777
Score = 105 bits (116), Expect = 8e-18
Identities = 67/73 (92%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716
|||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||
Sbjct 2038 TTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 2097
Query 8717 CCCCGACGAGGAG 8729
|||||||| ||||
Sbjct 2098 CCCCGACGGGGAG 2110
Score = 100 bits (110), Expect = 4e-16
Identities = 66/72 (92%), Gaps = 1/72 (1%)
Strand=Plus/Plus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 2039 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 2098
Query 11789 CCCGACGAGGAG 11800
||||||| ||||
Sbjct 2099 CCCGACGGGGAG 2110
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 2110 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2051
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 2050 TACTAACGAGGA 2039
>seq305004
Length=8776
Score = 105 bits (116), Expect = 8e-18
Identities = 69/75 (92%), Gaps = 1/75 (1%)
Strand=Plus/Plus
Query 11728 AGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 11786
||||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||
Sbjct 5702 AGTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 5761
Query 11787 TCCCCGACGAGGAGG 11801
||||||||| |||||
Sbjct 5762 TCCCCGACGGGGAGG 5776
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 2821 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 2880
Query 8718 CCCGACGAGGAG 8729
||||||| ||||
Sbjct 2881 CCCGACGGGGAG 2892
Score = 104 bits (114), Expect = 3e-17
Identities = 68/75 (91%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 8655 TATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 8714
|| ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||
Sbjct 5701 TAGTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 5760
Query 8715 TTCCCCGACGAGGAG 8729
|||||||||| ||||
Sbjct 5761 TTCCCCGACGGGGAG 5775
Score = 102 bits (112), Expect = 1e-16
Identities = 67/73 (92%), Gaps = 1/73 (1%)
Strand=Plus/Plus
Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
|||||||||||||||||||| |||| |||| ||||| | |||||||||||||||||||||
Sbjct 2821 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 2880
Query 11789 CCCGACGAGGAGG 11801
||||||| |||||
Sbjct 2881 CCCGACGGGGAGG 2893
Score = 96.9 bits (106), Expect = 4e-15
Identities = 65/73 (89%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 2892 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 2833
Query 139413 TACTAACGAGGAT 139425
|||||||||||||
Sbjct 2832 TACTAACGAGGAT 2820
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 5775 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 5716
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 5715 TACTAACGAGGA 5704
>seq197299
Length=26544
Score = 105 bits (116), Expect = 8e-18
Identities = 69/76 (91%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 8654 TTATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCG 8713
|| |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||
Sbjct 3893 TTCTTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCG 3952
Query 8714 ATTCCCCGACGAGGAG 8729
||||||||||| ||||
Sbjct 3953 ATTCCCCGACGGGGAG 3968
Score = 100 bits (110), Expect = 4e-16
Identities = 66/72 (92%), Gaps = 1/72 (1%)
Strand=Plus/Plus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 3897 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 3956
Query 11789 CCCGACGAGGAG 11800
||||||| ||||
Sbjct 3957 CCCGACGGGGAG 3968
Score = 98.7 bits (108), Expect = 1e-15
Identities = 66/74 (89%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 139351 AACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCAC 139410
|||||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||
Sbjct 3970 AACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 3911
Query 139411 TATACTAACGAGGA 139424
||||||||||||||
Sbjct 3910 TATACTAACGAGGA 3897
>seq52516
Length=9516
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||||||||||||||||||||||| |||| ||||| | |||||||||||||||| ||||
Sbjct 5563 TCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 5504
Query 8718 CCCGACGAGGAG 8729
||||||| ||||
Sbjct 5503 CCCGACGGGGAG 5492
Score = 96.9 bits (106), Expect = 4e-15
Identities = 66/73 (90%), Gaps = 1/73 (1%)
Strand=Plus/Minus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||| ||||
Sbjct 5563 TCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 5504
Query 11789 CCCGACGAGGAGG 11801
||||||| |||||
Sbjct 5503 CCCGACGGGGAGG 5491
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| | |||||||||||||||| | |||| |||||||| |||||||||
Sbjct 5492 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 5551
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 5552 TACTAACGAGGA 5563
>seq51356
Length=5865
Score = 91.5 bits (100), Expect = 2e-13
Identities = 65/75 (87%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||||||||||||| || ||||| |||| ||||| |||| ||||||||||||| ||||
Sbjct 3244 TCCTCGTTAGTATAGTTGTGAGTATCCCCGCCTGTCACACGAGAGACCGGGGTTCCATTC 3303
Query 8718 CCCGACGAGGAGCAG 8732
||| ||| |||| ||
Sbjct 3304 CCCAACGGGGAGGAG 3318
Score = 89.7 bits (98), Expect = 6e-13
Identities = 66/76 (87%), Gaps = 1/76 (1%)
Strand=Plus/Plus
Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785
|| |||||||||||||||| || ||||| |||| ||||| |||| ||||||||||||| |
Sbjct 3241 CACTCCTCGTTAGTATAGTTGTGAGTATCCCCGCCTGTCACACGAGAGACCGGGGTTCCA 3300
Query 11786 TTCCCCGACGAGGAGG 11801
|||||| ||| |||||
Sbjct 3301 TTCCCCAACGGGGAGG 3316
>seq17235
Length=27549
Score = 91.5 bits (100), Expect = 2e-13
Identities = 68/80 (85%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 8653 CTTATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTC 8712
|| ||||||||| ||||||||||| ||||| |||| ||||| | |||||||| |||||
Sbjct 4768 CTCATTCCTCGTCAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACTGGGGTGT 4827
Query 8713 GATTCCCCGACGAGGAGCAG 8732
|||||||||||| |||| ||
Sbjct 4828 GATTCCCCGACGGGGAGGAG 4847
Score = 84.2 bits (92), Expect = 3e-11
Identities = 65/76 (86%), Gaps = 1/76 (1%)
Strand=Plus/Plus
Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785
|| ||||||| ||||||||||| ||||| |||| ||||| | |||||||| ||||| ||
Sbjct 4770 CATTCCTCGTCAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACTGGGGTGTGA 4829
Query 11786 TTCCCCGACGAGGAGG 11801
|||||||||| |||||
Sbjct 4830 TTCCCCGACGGGGAGG 4845
>seq363789
Length=2001
Score = 84.2 bits (92), Expect = 3e-11
Identities = 73/88 (83%), Gaps = 2/88 (2%)
Strand=Plus/Minus
Query 11718 TGTGTAACCCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACC 11776
|| |||| || |||||||||||||||||||| ||||| || | ||||| | ||||||||
Sbjct 168 TGGGTAAGCC-GTCCTCGTTAGTATAGTGGTGAGTATCCCAGCCTGTCACGTGGGAGACC 110
Query 11777 GGGGTTCGATTCCCCGACGAGGAGGGAG 11804
|||||| ||||||| || | ||||| ||
Sbjct 109 GGGGTTTGATTCCCTGATGGGGAGGCAG 82
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627640820673840
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