Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq320552 109 7e-19 seq151921 109 7e-19 seq166666 107 2e-18 seq354556 105 8e-18 seq305004 105 8e-18 seq197299 105 8e-18 seq52516 104 3e-17 seq51356 91.5 2e-13 seq17235 91.5 2e-13 seq363789 84.2 3e-11 >seq320552 Length=16403 Score = 109 bits (120), Expect = 7e-19 Identities = 72/80 (90%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 8653 CTTATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTC 8712 || ||||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||| Sbjct 13668 CTCATTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTC 13727 Query 8713 GATTCCCCGACGAGGAGCAG 8732 |||||||||||| |||| || Sbjct 13728 GATTCCCCGACGGGGAGGAG 13747 Score = 102 bits (112), Expect = 1e-16 Identities = 69/76 (91%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785 || ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||| Sbjct 13670 CATTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 13729 Query 11786 TTCCCCGACGAGGAGG 11801 |||||||||| ||||| Sbjct 13730 TTCCCCGACGGGGAGG 13745 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 13744 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 13685 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 13684 TACTAACGAGGA 13673 >seq151921 Length=25545 Score = 109 bits (120), Expect = 7e-19 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 8655 TATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 8714 |||||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||| Sbjct 21567 TATTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 21626 Query 8715 TTCCCCGACGAGGAG 8729 |||||||||| |||| Sbjct 21627 TTCCCCGACGGGGAG 21641 Score = 102 bits (112), Expect = 1e-16 Identities = 67/73 (92%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 21570 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 21629 Query 11789 CCCGACGAGGAGG 11801 ||||||| ||||| Sbjct 21630 CCCGACGGGGAGG 21642 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 21641 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 21582 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 21581 TACTAACGAGGA 21570 >seq166666 Length=4101 Score = 107 bits (118), Expect = 2e-18 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 8656 ATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 8715 ||||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||| Sbjct 631 ATTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 690 Query 8716 TCCCCGACGAGGAG 8729 ||||||||| |||| Sbjct 691 TCCCCGACGGGGAG 704 Score = 102 bits (112), Expect = 1e-16 Identities = 69/76 (91%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 633 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 692 Query 11789 CCCGACGAGGAGGGAG 11804 ||||||| ||||| || Sbjct 693 CCCGACGGGGAGGCAG 708 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 704 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 645 Query 139413 TACTAACGAGGATTT 139427 |||||||||||| || Sbjct 644 TACTAACGAGGAATT 630 >seq354556 Length=2777 Score = 105 bits (116), Expect = 8e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 2038 TTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 2097 Query 8717 CCCCGACGAGGAG 8729 |||||||| |||| Sbjct 2098 CCCCGACGGGGAG 2110 Score = 100 bits (110), Expect = 4e-16 Identities = 66/72 (92%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 2039 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 2098 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 2099 CCCGACGGGGAG 2110 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 2110 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2051 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 2050 TACTAACGAGGA 2039 >seq305004 Length=8776 Score = 105 bits (116), Expect = 8e-18 Identities = 69/75 (92%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 11728 AGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 11786 ||||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||| Sbjct 5702 AGTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGAT 5761 Query 11787 TCCCCGACGAGGAGG 11801 ||||||||| ||||| Sbjct 5762 TCCCCGACGGGGAGG 5776 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 2821 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 2880 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 2881 CCCGACGGGGAG 2892 Score = 104 bits (114), Expect = 3e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 8655 TATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 8714 || ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||| Sbjct 5701 TAGTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 5760 Query 8715 TTCCCCGACGAGGAG 8729 |||||||||| |||| Sbjct 5761 TTCCCCGACGGGGAG 5775 Score = 102 bits (112), Expect = 1e-16 Identities = 67/73 (92%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||||||||||||||||| |||| |||| ||||| | ||||||||||||||||||||| Sbjct 2821 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 2880 Query 11789 CCCGACGAGGAGG 11801 ||||||| ||||| Sbjct 2881 CCCGACGGGGAGG 2893 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 2892 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 2833 Query 139413 TACTAACGAGGAT 139425 ||||||||||||| Sbjct 2832 TACTAACGAGGAT 2820 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 5775 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 5716 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 5715 TACTAACGAGGA 5704 >seq197299 Length=26544 Score = 105 bits (116), Expect = 8e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 8654 TTATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCG 8713 || |||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||| Sbjct 3893 TTCTTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCG 3952 Query 8714 ATTCCCCGACGAGGAG 8729 ||||||||||| |||| Sbjct 3953 ATTCCCCGACGGGGAG 3968 Score = 100 bits (110), Expect = 4e-16 Identities = 66/72 (92%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 3897 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 3956 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 3957 CCCGACGGGGAG 3968 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 139351 AACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCAC 139410 |||||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||| Sbjct 3970 AACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 3911 Query 139411 TATACTAACGAGGA 139424 |||||||||||||| Sbjct 3910 TATACTAACGAGGA 3897 >seq52516 Length=9516 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||||||||| |||| ||||| | |||||||||||||||| |||| Sbjct 5563 TCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 5504 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 5503 CCCGACGGGGAG 5492 Score = 96.9 bits (106), Expect = 4e-15 Identities = 66/73 (90%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||| |||| Sbjct 5563 TCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTC 5504 Query 11789 CCCGACGAGGAGG 11801 ||||||| ||||| Sbjct 5503 CCCGACGGGGAGG 5491 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| | |||||||||||||||| | |||| |||||||| ||||||||| Sbjct 5492 CTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 5551 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 5552 TACTAACGAGGA 5563 >seq51356 Length=5865 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||||||||||||||| || ||||| |||| ||||| |||| ||||||||||||| |||| Sbjct 3244 TCCTCGTTAGTATAGTTGTGAGTATCCCCGCCTGTCACACGAGAGACCGGGGTTCCATTC 3303 Query 8718 CCCGACGAGGAGCAG 8732 ||| ||| |||| || Sbjct 3304 CCCAACGGGGAGGAG 3318 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785 || |||||||||||||||| || ||||| |||| ||||| |||| ||||||||||||| | Sbjct 3241 CACTCCTCGTTAGTATAGTTGTGAGTATCCCCGCCTGTCACACGAGAGACCGGGGTTCCA 3300 Query 11786 TTCCCCGACGAGGAGG 11801 |||||| ||| ||||| Sbjct 3301 TTCCCCAACGGGGAGG 3316 >seq17235 Length=27549 Score = 91.5 bits (100), Expect = 2e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 8653 CTTATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTC 8712 || ||||||||| ||||||||||| ||||| |||| ||||| | |||||||| ||||| Sbjct 4768 CTCATTCCTCGTCAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACTGGGGTGT 4827 Query 8713 GATTCCCCGACGAGGAGCAG 8732 |||||||||||| |||| || Sbjct 4828 GATTCCCCGACGGGGAGGAG 4847 Score = 84.2 bits (92), Expect = 3e-11 Identities = 65/76 (86%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785 || ||||||| ||||||||||| ||||| |||| ||||| | |||||||| ||||| || Sbjct 4770 CATTCCTCGTCAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACTGGGGTGTGA 4829 Query 11786 TTCCCCGACGAGGAGG 11801 |||||||||| ||||| Sbjct 4830 TTCCCCGACGGGGAGG 4845 >seq363789 Length=2001 Score = 84.2 bits (92), Expect = 3e-11 Identities = 73/88 (83%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 11718 TGTGTAACCCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACC 11776 || |||| || |||||||||||||||||||| ||||| || | ||||| | |||||||| Sbjct 168 TGGGTAAGCC-GTCCTCGTTAGTATAGTGGTGAGTATCCCAGCCTGTCACGTGGGAGACC 110 Query 11777 GGGGTTCGATTCCCCGACGAGGAGGGAG 11804 |||||| ||||||| || | ||||| || Sbjct 109 GGGGTTTGATTCCCTGATGGGGAGGCAG 82 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627640820673840