Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq66256 118 1e-21
seq300236 113 4e-20
seq2452699 102 8e-17
seq317140 96.9 3e-15
seq332285 84.2 2e-11
>seq66256
Length=6617
Score = 118 bits (130), Expect = 1e-21
Identities = 144/194 (74%), Gaps = 2/194 (1%)
Strand=Plus/Minus
Query 133468 ACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCG 133526
|||||||||| || |||||||| | ||| | | | || || |||||||||| ||
Sbjct 1609 ACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGCTGGCA 1551
Query 133527 TAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGC 133586
| ||||||| ||||||||| || || ||||||||||| || |||||| ||| |
Sbjct 1550 AAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACG 1491
Query 133587 TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTT 133646
| ||| | ||||| ||||||| || || | ||||| ||| ||||||||||| || ||
Sbjct 1490 TTCTCGATGGTGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTC 1431
Query 133647 ACGAAAATCTGCAT 133660
||||| || |||||
Sbjct 1430 ACGAAGATTTGCAT 1417
>seq300236
Length=7644
Score = 113 bits (124), Expect = 4e-20
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523
|||||||||||||| || ||||| || | ||| | || || ||||| || |||
Sbjct 7610 GTGGACTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGCCCATCTTCCAGCTGTTTCCCC 7551
Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583
|| | || | || ||||||||| ||||||||||| || || || ||||| ||||
Sbjct 7550 GCAAAGATCAACCTCTGCTGGTCTGGAGGGATGCCCTCTTTTTCTTGTATCTTCCCCTTG 7491
Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643
| | ||||| ||||| |||||||||| || | |||| |||||| || || || ||
Sbjct 7490 ACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTTTTACCAGTGAGGGTC 7431
Query 133644 TTTACGAAAATCTGCAT 133660
||||| || ||||||||
Sbjct 7430 TTTACAAAGATCTGCAT 7414
>seq2452699
Length=160
Score = 102 bits (112), Expect = 8e-17
Identities = 101/131 (77%), Gaps = 0/131 (0%)
Strand=Plus/Minus
Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGC 133589
||||||| ||||||||| || || ||||||||||| || |||||| ||| | | |
Sbjct 153 ATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTC 94
Query 133590 TCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACG 133649
|| | ||||| |||||||||| || | |||| ||| ||||||||||| || || |||
Sbjct 93 TCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTGCCGGTCAGGGTCTTCACG 34
Query 133650 AAAATCTGCAT 133660
|| ||||||||
Sbjct 33 AAGATCTGCAT 23
>seq317140
Length=4972
Score = 96.9 bits (106), Expect = 3e-15
Identities = 145/201 (72%), Gaps = 5/201 (2%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGC--TTG 133520
||||||||||||||| |||||||| || | ||| | | ||| |||||| ||
Sbjct 4423 GGTGGACTCTTTCTGGATATTGTAGTCTGACGGAGTGTAGCCATGCTCCAGCTGCGTGTG 4364
Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580
|||||| ||| |||||| | ||||| || |||||||| |||||||| ||| ||| ||
Sbjct 4363 CCCGCGACAATCAGCCGCGGTTGGTCAGGCGGGATGCCCTCCTTGTCTTGGAT-TTTGGC 4305
Query 133581 -TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAG 133639
|||| | |||| ||||| |||||||| | || | ||| | || ||||| ||||
Sbjct 4304 TTTGACATTCTCAGTGGTGTCACTGGGCTCC-CCTCAAGGGTAATTGTCTTGCCCATCAG 4246
Query 133640 AGTTTTTACGAAAATCTGCAT 133660
|| || || | ||||||||
Sbjct 4245 GGTCTTCACAGAGATCTGCAT 4225
>seq332285
Length=8438
Score = 84.2 bits (92), Expect = 2e-11
Identities = 146/208 (70%), Gaps = 11/208 (5%)
Strand=Plus/Minus
Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATC--GCCCATCGTGGACGAGTCCTCGA 133512
|| |||| |||||||||||| || |||||||| || | || |||| | | || |||
Sbjct 822 AAGTGTAGGGTGGACTCTTTTTGGATATTGTAGTCTGACAGATTGTGG-CCATTCTTCG- 765
Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572
|||| ||||| | | |||| || | || ||| || || |||| ||| ||||||||
Sbjct 764 GCTGTTTGCCAGTGAAAATCAGACTCTACTGATCAGGTGGGAAGCCCTCCTTGTC----- 710
Query 133573 TCTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631
||| || |||| | |||| ||||| ||||||| || || ||| ||| |||
Sbjct 709 -TTTTGGCTTTGACATTCTCAGTAGTGTCACTGGGCTCAACCTCATGCGTGGTGGTCTTG 651
Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCA 133659
| || || ||| |||| || |||||||
Sbjct 650 CTTGTTAGGGTTCTTACAAAGATCTGCA 623
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 464757669269640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |