Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq66256 118 1e-21 seq300236 113 4e-20 seq2452699 102 8e-17 seq317140 96.9 3e-15 seq332285 84.2 2e-11 >seq66256 Length=6617 Score = 118 bits (130), Expect = 1e-21 Identities = 144/194 (74%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 133468 ACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCG 133526 |||||||||| || |||||||| | ||| | | | || || |||||||||| || Sbjct 1609 ACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGCTGGCA 1551 Query 133527 TAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGC 133586 | ||||||| ||||||||| || || ||||||||||| || |||||| ||| | Sbjct 1550 AAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACG 1491 Query 133587 TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTT 133646 | ||| | ||||| ||||||| || || | ||||| ||| ||||||||||| || || Sbjct 1490 TTCTCGATGGTGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTC 1431 Query 133647 ACGAAAATCTGCAT 133660 ||||| || ||||| Sbjct 1430 ACGAAGATTTGCAT 1417 >seq300236 Length=7644 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||||||||| || ||||| || | ||| | || || ||||| || ||| Sbjct 7610 GTGGACTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGCCCATCTTCCAGCTGTTTCCCC 7551 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || | || ||||||||| ||||||||||| || || || ||||| |||| Sbjct 7550 GCAAAGATCAACCTCTGCTGGTCTGGAGGGATGCCCTCTTTTTCTTGTATCTTCCCCTTG 7491 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||||| ||||| |||||||||| || | |||| |||||| || || || || Sbjct 7490 ACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTTTTACCAGTGAGGGTC 7431 Query 133644 TTTACGAAAATCTGCAT 133660 ||||| || |||||||| Sbjct 7430 TTTACAAAGATCTGCAT 7414 >seq2452699 Length=160 Score = 102 bits (112), Expect = 8e-17 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGC 133589 ||||||| ||||||||| || || ||||||||||| || |||||| ||| | | | Sbjct 153 ATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTC 94 Query 133590 TCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACG 133649 || | ||||| |||||||||| || | |||| ||| ||||||||||| || || ||| Sbjct 93 TCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTGCCGGTCAGGGTCTTCACG 34 Query 133650 AAAATCTGCAT 133660 || |||||||| Sbjct 33 AAGATCTGCAT 23 >seq317140 Length=4972 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/201 (72%), Gaps = 5/201 (2%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGC--TTG 133520 ||||||||||||||| |||||||| || | ||| | | ||| |||||| || Sbjct 4423 GGTGGACTCTTTCTGGATATTGTAGTCTGACGGAGTGTAGCCATGCTCCAGCTGCGTGTG 4364 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 |||||| ||| |||||| | ||||| || |||||||| |||||||| ||| ||| || Sbjct 4363 CCCGCGACAATCAGCCGCGGTTGGTCAGGCGGGATGCCCTCCTTGTCTTGGAT-TTTGGC 4305 Query 133581 -TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAG 133639 |||| | |||| ||||| |||||||| | || | ||| | || ||||| |||| Sbjct 4304 TTTGACATTCTCAGTGGTGTCACTGGGCTCC-CCTCAAGGGTAATTGTCTTGCCCATCAG 4246 Query 133640 AGTTTTTACGAAAATCTGCAT 133660 || || || | |||||||| Sbjct 4245 GGTCTTCACAGAGATCTGCAT 4225 >seq332285 Length=8438 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/208 (70%), Gaps = 11/208 (5%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATC--GCCCATCGTGGACGAGTCCTCGA 133512 || |||| |||||||||||| || |||||||| || | || |||| | | || ||| Sbjct 822 AAGTGTAGGGTGGACTCTTTTTGGATATTGTAGTCTGACAGATTGTGG-CCATTCTTCG- 765 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 |||| ||||| | | |||| || | || ||| || || |||| ||| |||||||| Sbjct 764 GCTGTTTGCCAGTGAAAATCAGACTCTACTGATCAGGTGGGAAGCCCTCCTTGTC----- 710 Query 133573 TCTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTG 133631 ||| || |||| | |||| ||||| ||||||| || || ||| ||| ||| Sbjct 709 -TTTTGGCTTTGACATTCTCAGTAGTGTCACTGGGCTCAACCTCATGCGTGGTGGTCTTG 651 Query 133632 CCGGTCAGAGTTTTTACGAAAATCTGCA 133659 | || || ||| |||| || ||||||| Sbjct 650 CTTGTTAGGGTTCTTACAAAGATCTGCA 623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 464757669269640