Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_024696.1
Length=180800
Score E
Sequences producing significant alignments: (Bits) Value
seq291908 273 2e-68
seq153451 212 7e-50
seq107656 89.7 6e-13
>seq291908
Length=12262
Score = 273 bits (302), Expect = 2e-68
Identities = 670/1005 (67%), Gaps = 17/1005 (2%)
Strand=Plus/Minus
Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118
|||||| ||||| | |||| ||| || | |||||||| || || | ||| |||
Sbjct 1654 CCAGGGCTTTATGCCTCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCGATGTCCG 1595
Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178
||||| ||||| || |||| ||| ||| | | || ||| || | || || |
Sbjct 1594 GGTCGAATTTGTTGGCAAACAAGTGGTGCACGCGCAGCAG---CCAGTTCAAGTCACCAG 1538
Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238
|||||| ||||||||||| |||||||| ||||||| ||||||||| || |||| || |
Sbjct 1537 CTCCGAAAACGCACACGGAGCGCACGTGGACGCCGCCGCACGGCGGGTAGGGGGCGCCCT 1478
Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298
| || || || || |||| ||||| ||||| ||||| | || ||||||||||| |
Sbjct 1477 TGGAAACGTCTCCTTCAAAGTACTGCCATTTAACAAACCTGGCAATCGCCTGCATGTCAG 1418
Query 162299 AGGTGTCGTACTTGTACACTGACGG-CACGGCTCCAGGAACACCCGGCAGTCTCTGTAGA 162357
| ||||||||||| | || | || || | || || || | || | ||||| | |
Sbjct 1417 ACGTGTCGTACTTATGG-CTCAAGGACAGTGACCCTGGGACTTCGGGGATCCTCTGAATA 1359
Query 162358 GTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTG 162417
|| ||||| || | ||||| || || || || || || | ||||||||| |||| |
Sbjct 1358 GTGGCCCAGAGATACTCGTCAGGGCTGTATGTGTCTTTGGCCCACTCCATAAACTTTTGG 1299
Query 162418 ACCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTA 162477
| ||| | | || | ||| || || ||| | || | ||| || || ||
Sbjct 1298 ATATTTTGGTTCTGGAGCACGTACTCCACATACTCCCTACTGACCACAAAATAGGCACTT 1239
Query 162478 CCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACC 162537
|| ||||||| ||| | | ||| || | |||||| ||| ||||| | |
Sbjct 1238 CCTGAAAACAGAGGTGTTTCAAGAGGTGGATGTATTTTGTCAGTTCCCATGTTGGTCAGC 1179
Query 162538 ATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGT 162597
|||| | ||||| | | ||| ||||||| | | ||| ||| || || |
Sbjct 1178 TTTCCATTCACGACTTCATAATGCTTTTTCCACCTTTCTTTTTTA-TGG--GATGGCATT 1122
Query 162598 ---TCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGA 162654
|| || ||||| |||| |||| ||| ||| |||| | || ||||| ||
Sbjct 1121 CTCTCCGTTTCTAGGTTGTTCTCACCCATCAACAACTTGAGCTTCCTGACAATCTCCAGG 1062
Query 162655 TTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTG 162714
||||| |||| ||||| || | ||||||||||| || | || ||||| | | |
Sbjct 1061 TTGGTTTTAATAGGAAAATCCATTCCGCAGAGATTTATCAGGTACTTCCAGTCTGCATTC 1002
Query 162715 AGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTAC 162774
| | | | || ||||| | ||||| ||||| ||||| || || ||||| || || |||
Sbjct 1001 ATCCTGGAGAGGTCCTGCATGCAGTTAAGATCAGCCTGAACCCGGCTCCAGGATGCATAC 942
Query 162775 ACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATC 162834
|| || |||||| | | |||||||||||||||| ||| || || | || |||| |
Sbjct 941 ACCACATTCTCCAGCTGACTGGCGACAAAGACATTACTGAAGCAGGATGCCATGCCCA-C 883
Query 162835 ACGGCCAGTGAGAACATCGGGTCC---GCTTTCCTATCTACGTGTACGCAGTATAGATTC 162891
| ||| | || || | ||| | ||| | || ||||| | || || | ||||
Sbjct 882 AGCTGCAGCCA-AAAAT-GATTCCTCTGATTTTGTGTCCACGTGAATACAATAGAAATTC 825
Query 162892 TGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACG 162951
||||| ||||||||||||||| | || || | ||| || || || || || |||||
Sbjct 824 TGAGGCATGTAGATGGCCCTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACT 765
Query 162952 ATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGTACTTG 163011
|||||||| ||||| || ||||| ||||| || ||| || | || ||| || |||
Sbjct 764 ATAGAATATGCTATTGGAAACTCCGCCTCTTCTTTACTAAGTGGTTCTATAATATATTTG 705
Query 163012 CGGTCCCTCACAAACGCCGCACAGTCCTCCGTCATGTTAACGTAG 163056
|| | | | | || | ||||| || | |||||||| | ||||
Sbjct 704 CGCTTCTTGATGAAAGAAGCACAATCACCAGTCATGTTTATGTAG 660
>seq153451
Length=22869
Score = 212 bits (234), Expect = 7e-50
Identities = 240/322 (75%), Gaps = 0/322 (0%)
Strand=Plus/Minus
Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830
|| |||| || || |||| | || || || ||||| || ||||| ||||||| | |
Sbjct 9338 CAAAGAGAGTGAGGCAGGCTATTCCTGAGATCTTTCCAGAACCAAAGATATTAAAGAGGC 9279
Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890
|| | |||| | || ||||||| |||||| ||||| || || | || || || |||
Sbjct 9278 ACTTGTAACACGCCTCATCCTCCAAGGTGGTATTCCAGAAGGTAATGGTTGAGTTCATGA 9219
Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950
|||| || || || ||||| | | ||||||||| | ||||||||| ||||| || ||
Sbjct 9218 GTCCAAGCTGGGTGATGTTTATCTTGTCCTTGTAGGCAGGCTGGACTACAACCCCATGGC 9159
Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010
|||||||| | ||| ||||||||| ||||| |||||| || || ||||| || || |
Sbjct 9158 TCTCGCTGTAGGTGAGCATGTTTTCTGGGCTTACAGCCTTGATTTTTTGCCATGTCACAA 9099
Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070
| |||||||||| | |||| ||||||||||||||||||||||||||||||| | |
Sbjct 9098 TCAAAACTTCTTGGGGATTTTGCAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAGCAGTG 9039
Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092
| || |||| || || |||||
Sbjct 9038 CTTTTACGTCCTGGGTCACCAC 9017
Score = 107 bits (118), Expect = 2e-18
Identities = 173/248 (70%), Gaps = 3/248 (1%)
Strand=Plus/Minus
Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562
||||||| ||| ||| || |||||||||| ||||| || | ||| ||||| ||||
Sbjct 11920 ACAGTTTCCCTGTAGTCAGTCACAGTCCCCAGGTGTAGCACCTGGCAGATCACATCCT-- 11863
Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622
| ||||| || | || || ||||| | || || ||||| || |||||||| || ||
Sbjct 11862 -TCCCCACCTGTCCCTTGGGGTCTTTGATCTGGAGGATGCTGGTGACAGATGTTGTTCCA 11804
Query 171623 TTACGATGTAGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAAT 171682
|| | ||| | | | | ||||| || || | || ||||| | || ||||| |
Sbjct 11803 TTGGGGTGTGAGATGATCTCGGTACTGTTCTCAACCCCTGATCCAGAGACATTCCAGGAG 11744
Query 171683 ATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAGAAC 171742
|| | ||| ||||| | |||| | ||||||||||| || |||| |||||| | ||
Sbjct 11743 ATCATAGGGGCTGGGCGAGCATTGGCAGAGCAAGTGATATTTAGGTGATCTTCAGATAAT 11684
Query 171743 TCATAGTG 171750
| ||||||
Sbjct 11683 TTATAGTG 11676
>seq107656
Length=18857
Score = 89.7 bits (98), Expect = 6e-13
Identities = 230/345 (67%), Gaps = 8/345 (2%)
Strand=Plus/Minus
Query 162643 ACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTC 162702
|||||||| ||||||||| | ||| ||||| || ||||| ||| | | ||||||
Sbjct 4823 ACCATCTCGGCATTGGTCTTTATGGGGAAGTCTGTCCCGCATGTATTCAGTAAGTATTTC 4764
Query 162703 CACTTAACGCTGAG-TCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGAC 162760
|| | | ||||| || | | || || | | ||||||||| || ||||| || |
Sbjct 4763 CA--TGGCACTGAGCTCTGGAGCAAGTCTTCCATACAGTTCAGGTCAGCCTGCACTCTGG 4706
Query 162761 TCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACG 162820
||| || || || || || ||||| || |||| | ||||||||| |||||| |
Sbjct 4705 ACCAGGAGGCATAAACCACTGGGACCAACTTACTGGCCATGAAGACATTGGGGAAACAGG 4646
Query 162821 AAACTATCCCCATCACGGCCAGTGAGAACAT--CGGGTCCGCTTTCCTATCTACGTGTAC 162878
||| || || | || ||| | ||| | | || | ||| ||| || || ||
Sbjct 4645 AAATAATGGCCTTGACTGCCTCTTTGAAAGTTTCTGGG--GACTTCTCATCCACATGGAC 4588
Query 162879 GCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTT 162938
||||||| ||||||||||| || | || | ||| | | || || | || |||||
Sbjct 4587 ACAGTATATGTTCTGAGGGGCATACACAGCTCGCAGCAGCCGTTCAAAGTTTTCAATCTT 4528
Query 162939 ATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983
| || ||||| || || || || |||||||| || | ||| ||
Sbjct 4527 CTCATGGACCACCATCGAGTATGCAATGGGGAAGTCTGACTCTTC 4483
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556100830065600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |