Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq291908 273 2e-68 seq153451 212 7e-50 seq107656 89.7 6e-13 >seq291908 Length=12262 Score = 273 bits (302), Expect = 2e-68 Identities = 670/1005 (67%), Gaps = 17/1005 (2%) Strand=Plus/Minus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||||| ||||| | |||| ||| || | |||||||| || || | ||| ||| Sbjct 1654 CCAGGGCTTTATGCCTCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCGATGTCCG 1595 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 ||||| ||||| || |||| ||| ||| | | || ||| || | || || | Sbjct 1594 GGTCGAATTTGTTGGCAAACAAGTGGTGCACGCGCAGCAG---CCAGTTCAAGTCACCAG 1538 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 |||||| ||||||||||| |||||||| ||||||| ||||||||| || |||| || | Sbjct 1537 CTCCGAAAACGCACACGGAGCGCACGTGGACGCCGCCGCACGGCGGGTAGGGGGCGCCCT 1478 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 | || || || || |||| ||||| ||||| ||||| | || ||||||||||| | Sbjct 1477 TGGAAACGTCTCCTTCAAAGTACTGCCATTTAACAAACCTGGCAATCGCCTGCATGTCAG 1418 Query 162299 AGGTGTCGTACTTGTACACTGACGG-CACGGCTCCAGGAACACCCGGCAGTCTCTGTAGA 162357 | ||||||||||| | || | || || | || || || | || | ||||| | | Sbjct 1417 ACGTGTCGTACTTATGG-CTCAAGGACAGTGACCCTGGGACTTCGGGGATCCTCTGAATA 1359 Query 162358 GTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTG 162417 || ||||| || | ||||| || || || || || || | ||||||||| |||| | Sbjct 1358 GTGGCCCAGAGATACTCGTCAGGGCTGTATGTGTCTTTGGCCCACTCCATAAACTTTTGG 1299 Query 162418 ACCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTA 162477 | ||| | | || | ||| || || ||| | || | ||| || || || Sbjct 1298 ATATTTTGGTTCTGGAGCACGTACTCCACATACTCCCTACTGACCACAAAATAGGCACTT 1239 Query 162478 CCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACC 162537 || ||||||| ||| | | ||| || | |||||| ||| ||||| | | Sbjct 1238 CCTGAAAACAGAGGTGTTTCAAGAGGTGGATGTATTTTGTCAGTTCCCATGTTGGTCAGC 1179 Query 162538 ATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGT 162597 |||| | ||||| | | ||| ||||||| | | ||| ||| || || | Sbjct 1178 TTTCCATTCACGACTTCATAATGCTTTTTCCACCTTTCTTTTTTA-TGG--GATGGCATT 1122 Query 162598 ---TCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGA 162654 || || ||||| |||| |||| ||| ||| |||| | || ||||| || Sbjct 1121 CTCTCCGTTTCTAGGTTGTTCTCACCCATCAACAACTTGAGCTTCCTGACAATCTCCAGG 1062 Query 162655 TTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTG 162714 ||||| |||| ||||| || | ||||||||||| || | || ||||| | | | Sbjct 1061 TTGGTTTTAATAGGAAAATCCATTCCGCAGAGATTTATCAGGTACTTCCAGTCTGCATTC 1002 Query 162715 AGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTAC 162774 | | | | || ||||| | ||||| ||||| ||||| || || ||||| || || ||| Sbjct 1001 ATCCTGGAGAGGTCCTGCATGCAGTTAAGATCAGCCTGAACCCGGCTCCAGGATGCATAC 942 Query 162775 ACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATC 162834 || || |||||| | | |||||||||||||||| ||| || || | || |||| | Sbjct 941 ACCACATTCTCCAGCTGACTGGCGACAAAGACATTACTGAAGCAGGATGCCATGCCCA-C 883 Query 162835 ACGGCCAGTGAGAACATCGGGTCC---GCTTTCCTATCTACGTGTACGCAGTATAGATTC 162891 | ||| | || || | ||| | ||| | || ||||| | || || | |||| Sbjct 882 AGCTGCAGCCA-AAAAT-GATTCCTCTGATTTTGTGTCCACGTGAATACAATAGAAATTC 825 Query 162892 TGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACG 162951 ||||| ||||||||||||||| | || || | ||| || || || || || ||||| Sbjct 824 TGAGGCATGTAGATGGCCCTCAGGAGCCTGTCAAGCATTTCAATTTTGTGATGAACCACT 765 Query 162952 ATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAAAGTACTTG 163011 |||||||| ||||| || ||||| ||||| || ||| || | || ||| || ||| Sbjct 764 ATAGAATATGCTATTGGAAACTCCGCCTCTTCTTTACTAAGTGGTTCTATAATATATTTG 705 Query 163012 CGGTCCCTCACAAACGCCGCACAGTCCTCCGTCATGTTAACGTAG 163056 || | | | | || | ||||| || | |||||||| | |||| Sbjct 704 CGCTTCTTGATGAAAGAAGCACAATCACCAGTCATGTTTATGTAG 660 >seq153451 Length=22869 Score = 212 bits (234), Expect = 7e-50 Identities = 240/322 (75%), Gaps = 0/322 (0%) Strand=Plus/Minus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 || |||| || || |||| | || || || ||||| || ||||| ||||||| | | Sbjct 9338 CAAAGAGAGTGAGGCAGGCTATTCCTGAGATCTTTCCAGAACCAAAGATATTAAAGAGGC 9279 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 || | |||| | || ||||||| |||||| ||||| || || | || || || ||| Sbjct 9278 ACTTGTAACACGCCTCATCCTCCAAGGTGGTATTCCAGAAGGTAATGGTTGAGTTCATGA 9219 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| || || || ||||| | | ||||||||| | ||||||||| ||||| || || Sbjct 9218 GTCCAAGCTGGGTGATGTTTATCTTGTCCTTGTAGGCAGGCTGGACTACAACCCCATGGC 9159 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 |||||||| | ||| ||||||||| ||||| |||||| || || ||||| || || | Sbjct 9158 TCTCGCTGTAGGTGAGCATGTTTTCTGGGCTTACAGCCTTGATTTTTTGCCATGTCACAA 9099 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | |||||||||| | |||| ||||||||||||||||||||||||||||||| | | Sbjct 9098 TCAAAACTTCTTGGGGATTTTGCAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAGCAGTG 9039 Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092 | || |||| || || ||||| Sbjct 9038 CTTTTACGTCCTGGGTCACCAC 9017 Score = 107 bits (118), Expect = 2e-18 Identities = 173/248 (70%), Gaps = 3/248 (1%) Strand=Plus/Minus Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562 ||||||| ||| ||| || |||||||||| ||||| || | ||| ||||| |||| Sbjct 11920 ACAGTTTCCCTGTAGTCAGTCACAGTCCCCAGGTGTAGCACCTGGCAGATCACATCCT-- 11863 Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622 | ||||| || | || || ||||| | || || ||||| || |||||||| || || Sbjct 11862 -TCCCCACCTGTCCCTTGGGGTCTTTGATCTGGAGGATGCTGGTGACAGATGTTGTTCCA 11804 Query 171623 TTACGATGTAGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAAT 171682 || | ||| | | | | ||||| || || | || ||||| | || ||||| | Sbjct 11803 TTGGGGTGTGAGATGATCTCGGTACTGTTCTCAACCCCTGATCCAGAGACATTCCAGGAG 11744 Query 171683 ATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAGAAC 171742 || | ||| ||||| | |||| | ||||||||||| || |||| |||||| | || Sbjct 11743 ATCATAGGGGCTGGGCGAGCATTGGCAGAGCAAGTGATATTTAGGTGATCTTCAGATAAT 11684 Query 171743 TCATAGTG 171750 | |||||| Sbjct 11683 TTATAGTG 11676 >seq107656 Length=18857 Score = 89.7 bits (98), Expect = 6e-13 Identities = 230/345 (67%), Gaps = 8/345 (2%) Strand=Plus/Minus Query 162643 ACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTC 162702 |||||||| ||||||||| | ||| ||||| || ||||| ||| | | |||||| Sbjct 4823 ACCATCTCGGCATTGGTCTTTATGGGGAAGTCTGTCCCGCATGTATTCAGTAAGTATTTC 4764 Query 162703 CACTTAACGCTGAG-TCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGAC 162760 || | | ||||| || | | || || | | ||||||||| || ||||| || | Sbjct 4763 CA--TGGCACTGAGCTCTGGAGCAAGTCTTCCATACAGTTCAGGTCAGCCTGCACTCTGG 4706 Query 162761 TCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACG 162820 ||| || || || || || ||||| || |||| | ||||||||| |||||| | Sbjct 4705 ACCAGGAGGCATAAACCACTGGGACCAACTTACTGGCCATGAAGACATTGGGGAAACAGG 4646 Query 162821 AAACTATCCCCATCACGGCCAGTGAGAACAT--CGGGTCCGCTTTCCTATCTACGTGTAC 162878 ||| || || | || ||| | ||| | | || | ||| ||| || || || Sbjct 4645 AAATAATGGCCTTGACTGCCTCTTTGAAAGTTTCTGGG--GACTTCTCATCCACATGGAC 4588 Query 162879 GCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTT 162938 ||||||| ||||||||||| || | || | ||| | | || || | || ||||| Sbjct 4587 ACAGTATATGTTCTGAGGGGCATACACAGCTCGCAGCAGCCGTTCAAAGTTTTCAATCTT 4528 Query 162939 ATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983 | || ||||| || || || || |||||||| || | ||| || Sbjct 4527 CTCATGGACCACCATCGAGTATGCAATGGGGAAGTCTGACTCTTC 4483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556100830065600