Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq141641 91.5 3e-13 >seq141641 Length=332 Score = 91.5 bits (100), Expect = 3e-13 Identities = 134/187 (72%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 131435 TTTCCAATTAAACATCACGATGTTTTCGATATGTATAAGAAATCTGTTGCGGCCTTCTGG 131494 ||||| |||||| | || ||| ||| | |||||||||||| ||| || |||| ||| Sbjct 143 TTTCCTATTAAATACCATGATATTTGGCAGATGTATAAGAAAGCTGAGGCTTCCTTTTGG 202 Query 131495 ACTGTTGAAGAGATCGATATGACCAAAGATATTGATGATTGGGAAAAATT-AACCTTGAA 131553 || | ||| ||| | || | |||| || ||| | | |||||| | || | ||| Sbjct 203 ACAGCTGAGGAGGTGGACCTTTCCAAGGACATTCAGCACTGGGAAGCCCTGAAGCCTGAG 262 Query 131554 TGAAAAAGATTTTGTTTCCAAAGTTCTTGCATTCTTCGCCGGAAGTGATGGCATTGTTAT 131613 || | ||||||| ||||| | || || || ||||| || | |||||||||||| || | Sbjct 263 -GAGAGAGATTTTATTTCCCATGTGCTGGCTTTCTTTGCAGCAAGTGATGGCATAGTAAA 321 Query 131614 TGAAAAT 131620 ||||||| Sbjct 322 TGAAAAT 328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1139848781282071