Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_024782.1
Length=36838
Score E
Sequences producing significant alignments: (Bits) Value
seq3084660 147 5e-31
seq3087822 123 6e-24
seq3088451 93.3 1e-14
seq156999 87.8 4e-13
>seq3084660
Length=3030
Score = 147 bits (162), Expect = 5e-31
Identities = 137/170 (81%), Gaps = 3/170 (2%)
Strand=Plus/Minus
Query 25580 CGATGCAGGAAGCGACCGGCAAGGCTGTTTCGGATACGGTCGCCGAGTTCTCCAAGCTGG 25639
||||||||||||||||||||||||| || || ||||| |||||||| ||||||||||
Sbjct 2200 CGATGCAGGAAGCGACCGGCAAGGCCGTGAGCGAGACGGTTGCCGAGTTTTCCAAGCTGG 2141
Query 25640 CCGACGAACCGGTCAAAGCCTC-GCAACAGCTCAACGAGAAATATCACTACCTGACCGCC 25698
| ||||| |||||||| || || || | ||| |||||| | || ||||||||||| |||
Sbjct 2140 CTGACGATCCGGTCAAGGCGTCCGCCGC-GCTAAACGAGCAGTACCACTACCTGACTGCC 2082
Query 25699 TCGGTTTACGAGCAGATAGCCGCCCTCGATCAGCAAGGCGAT-TCGCTGG 25747
||||||||| ||| || | || || || ||||||||||| ||||||
Sbjct 2081 TCGGTTTACTCGCAAATCGTGGCTCTGGAGAAGCAAGGCGATCACGCTGG 2032
>seq3087822
Length=6084
Score = 123 bits (136), Expect = 6e-24
Identities = 126/162 (78%), Gaps = 2/162 (1%)
Strand=Plus/Minus
Query 25580 CGATGCAGGAAGCGACCGGCAAGGCTGTTTCGGATACGGTCGCCGAGTTCTCCAAGCTGG 25639
|||||||||| || ||||||||||| || || |||||||| ||||||||||| ||||
Sbjct 5242 CGATGCAGGAGGCCACCGGCAAGGCCGTAAGCGAAACGGTCGCTGAGTTCTCCAAACTGG 5183
Query 25640 CCGACGAACCGGTCAAAGCCTC-GCAACAGCTCAACGAGAAATATCACTACCTGACCGCC 25698
| ||||| |||||||| || || || | ||| || ||| |||| || |||||||| |||
Sbjct 5182 CTGACGATCCGGTCAAGGCATCCGCCGC-GCTTAATGAGCAATACCATTACCTGACTGCC 5124
Query 25699 TCGGTTTACGAGCAGATAGCCGCCCTCGATCAGCAAGGCGAT 25740
|||||||| ||| || | || || || || |||||| ||
Sbjct 5123 TCGGTTTATTCGCAAATTTCAGCACTGGAACAACAAGGCAAT 5082
Score = 82.4 bits (90), Expect = 2e-11
Identities = 141/202 (70%), Gaps = 2/202 (1%)
Strand=Plus/Minus
Query 26527 GACCAGGTCACCGCAGCCTATGAGGGGGAAATCCAGGCGCTGGAGGCGCTGCGCGACAAA 26586
|||||||| || || ||||| |||| || ||| || ||||| || | | |||
Sbjct 4367 GACCAGGTGACGGCGGCCTACGAGGCCGAGATCACCGCACTGGAAGCCGTCAAGGGCAAG 4308
Query 26587 AGTTCCACCACGGCGGCCCAGCGCATCAGCCTGGACCAGAAGATCGCCGAGGCCAGGAAC 26646
| | || |||| || ||| ||||| |||||||||||||||||||| || | | |
Sbjct 4307 AAGACAACATCGGCCGCGCAGAGCATCCAGCTGGACCAGAAGATCGCCGACGC-ACGCGC 4249
Query 26647 AA-CATGGTCAAGGCGCAGAAGAAGGCCGACGCCGACCTGGAAGTCCTCCAGCTCAACGA 26705
| ||||||||||||||||||| | || ||| | | || ||||| || | |||||
Sbjct 4248 AGGCATGGTCAAGGCGCAGAAGGACGCTGACAGCCAGCTTGAAGTGCTGGCGACGAACGA 4189
Query 26706 ACAGGGGCGCCTGAAGAAACAG 26727
||||||||| ||||||
Sbjct 4188 GACCGGGCGCCTGGCCAAACAG 4167
>seq3088451
Length=13260
Score = 93.3 bits (102), Expect = 1e-14
Identities = 209/304 (69%), Gaps = 10/304 (3%)
Strand=Plus/Plus
Query 26431 AACGCCGAGCAGAAGCTCCAGGCGCAGCAGCGCGCCGGCCTGCTGA-GCTATGCGGACTA 26489
|||||| || || | || ||||||||||| || ||| || | ||| | |||||||
Sbjct 7376 AACGCCCAGAAGGAACTGGAGGCGCAGCAGAAGGCTGGCGTGGTTTCGCTGT-CGGACTA 7434
Query 26490 TGTCGCGCAGCGCGGCGAAC-TGATCAGCCAGAACAAGGACCAGGTCACCGCAGCCTATG 26548
| ||| || | ||| | |||||| |||| | |||||| | || || || || ||
Sbjct 7435 CGCAAAGCAACG-GTCGACCCTGATCAACCAGGAAAAGGACGATGTGACGGCCGCGTACC 7493
Query 26549 AGGGGGAAATCCAGGCGCTGGAGGCG--CTGCGCGACAAAAGTTCCACCACGGCGGCCCA 26606
||| || ||| | || ||||||||| | || | |||| ||| ||| |||| ||
Sbjct 7494 AGGCTGAGATCGATGCACTGGAGGCGGCCAAGGCCAAGAAAGG--CACAACGACGGCTCA 7551
Query 26607 GCGCATCAGCCTGGACCAGAAGATCGCCGAGGCCAGGAACAACATGGTCAAGGCGCAGAA 26666
| | ||| |||||||| ||||||||||| || || | ||||||||||| |||||
Sbjct 7552 GAGTATCCAGCTGGACCAAAAGATCGCCGATGCACGGCAGGGGATGGTCAAGGCTCAGAA 7611
Query 26667 GAAGGCCGACGCCGACCTGGAAGTC-CTCCAGCTCAACGAACAGGGGCGCCTGAAGAAAC 26725
| | || ||| | | ||| ||| | || | |||||| | || |||||| || |||
Sbjct 7612 GGATGCTGACAGCCAGCTGACCGTCATTGCAAC-GAACGAAAAAGGCCGCCTGGAGCAAC 7670
Query 26726 AGAC 26729
|||
Sbjct 7671 TGAC 7674
>seq156999
Length=6365
Score = 87.8 bits (96), Expect = 4e-13
Identities = 171/248 (69%), Gaps = 5/248 (2%)
Strand=Plus/Plus
Query 10888 AACCTCGCGGCATCCGCAACAACAACCCCGGCAACATCGTTTGGTCGGCACGCAACAACT 10947
|||| |||||| | || ||| ||||||||||||||||| | || |||| | |
Sbjct 3934 AACC-CGCGGCGTTCGTAACCGCAACCCCGGCAACATCGACTACAACTCAGCCAACCAGT 3992
Query 10948 GGCAGGGCCAGCTCCCGCACAACCCGAAGATCGAGCCCCGATTCGCCCGCTTCGACACCG 11007
|||| ||||||||| || | | ||| | | ||| || |||||||| || || ||
Sbjct 3993 GGCAAGGCCAGCTCAAGCCCGATCCGTCGCTTGAGAAGCGGTTCGCCCGGTTTGATACGC 4052
Query 11008 CGCATAACGGAATCCGCGCCTTGGCAAAGCTGCTGCTGAACTATC-GCA-AGGTCCACGG 11065
| | ||||| ||||||||| ||| ||| ||||||||| ||| | ||| | | || ||
Sbjct 4053 CCGAGAACGGTATCCGCGCCCTGGGCAAGTTGCTGCTGACCTACCAGCATAAG--CATGG 4110
Query 11066 CCTGCGCACCGTCGAATCGTTGATCGCACGCTGGGCGCCGTCCAACGAGAACGACACCCG 11125
||| || || | | | ||| |||||||| || || ||||||||||||
Sbjct 4111 GCTGAAGACGGTGAAGGCCATTATCAGCCGCTGGGCACCATCGGTAGAGAACGACACCGC 4170
Query 11126 CGCATATG 11133
||| ||||
Sbjct 4171 CGCCTATG 4178
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 113441026217600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |