Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_024783.1 Length=44332 Score E Sequences producing significant alignments: (Bits) Value seq3088451 104 6e-18 >seq3088451 Length=13260 Score = 104 bits (114), Expect = 6e-18 Identities = 213/317 (67%), Gaps = 0/317 (0%) Strand=Plus/Plus Query 18093 ATCGACGCCCGCCTGCGTTACCCGCTAACCGCGCTGTTGTTTGTGGAGTTCGACGCCAAA 18152 |||||||| ||||| ||||| ||||||||| |||| || |||||||||||| | Sbjct 11832 ATCGACGCAAAGCTGCGCTACCCAAACACCGCGCTGCTGTTCGTCGAGTTCGACGCCGAG 11891 Query 18153 GCGTTCCAGAACATCCCGCGCGTGTCCATCAAGTGCAAAGGCCGCAAAGTTCTAATACCG 18212 |||| |||||| ||| |||| || | ||||| || | ||| | | ||| Sbjct 11892 CAGTTCACGAACATTCCGGCCGTGACCGTGAAGTGTAAGGCGCGCCGGTGGCAGGTGCCG 11951 Query 18213 AACAACTACGATCCGATTAATCATACATATTCCGGGGACTGGGACGGCACGTTTAAACGC 18272 | ||||||||||||| | | || || ||||| | |||||||||||| | ||| Sbjct 11952 AGCAACTACGATCCGGTGGCCCGCACCTACTCCGGCGCCTGGGACGGCACCATGAAAGAG 12011 Query 18273 GCATGGACGGATAACCCTGCGTGGCACTGGTACGATATTTGTATTACTGAGCGCTTCGGC 18332 || ||||| ||||||| || ||| | |||| || || | || || || || Sbjct 12012 GCCTGGACCAATAACCCGGCCTGGATCACCTACGGCATCTGCACCCAAGACCGTTTTGGT 12071 Query 18333 CTCGGTCGGCGTATCAAACCGCAAATGTTAAACCGGTACGCGCTCTACCAGATTGCGCAG 18392 || || || || ||||| ||| ||| | || || | ||| |||| || || ||| Sbjct 12072 CTGGGCCGCCGCATCAAGCCGTGGATGGTGGACAAGTGGGAGCTTTACCGAATCGCACAG 12131 Query 18393 CGCTGCGATCAGTTGGT 18409 ||||| |||||||| Sbjct 12132 TATTGCGACCAGTTGGT 12148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136542304763108