Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq185925 109 1e-18
seq2709013 105 2e-17
seq300236 96.9 8e-15
seq234195 95.1 3e-14
seq2409662 91.5 3e-13
seq66256 84.2 5e-11
>seq185925
Length=7279
Score = 109 bits (120), Expect = 1e-18
Identities = 147/205 (72%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|| || || || || || || |||||| | || || ||| | || ||| | |||
Sbjct 501 AAGACCCTGACGGGGAAGACCATCACTCTTGAGGTCGAACCCTTGGATACAATAGAAAAT 442
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|||||| ||||| || || || ||||||||| || ||| ||||||| ||||
Sbjct 441 GTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAAAGACAGATCTGT 382
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
|| || ||||| ||||||||||| |||||| | || |||||| | || || |||||
Sbjct 381 GCTGGCAAGCAACTGGAAGATGGACATACTTTGTCTGACTACAACATTCAAAAGGAGTCC 322
Query 206365 ACTCTTCACCTTGTTTTGAGACTTC 206389
|||||||| || || ||||||||||
Sbjct 321 ACTCTTCATCTAGTGTTGAGACTTC 297
>seq2709013
Length=200
Score = 105 bits (116), Expect = 2e-17
Identities = 136/188 (72%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 206203 ACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAA 206262
|| |||||| | || | ||| || || ||| | ||| |||||| ||||| ||
Sbjct 198 ACCATCACTCTCGAGCTTGAACCCTCAGATACAATAGAAAATGTAAAGGCCAAGATCCAG 139
Query 206263 GAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAA 206322
| || ||||||||| || ||| |||||||| ||| | || || ||||| |||||
Sbjct 138 GGTAAGGAAGGAATTCCTCCTGACCAGCAAAGACTGATCATTGCTGGCAAGCAACTGGAA 79
Query 206323 GATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTG 206382
|||||| | |||||| | || |||||| | || || ||||| ||||||| || || |||
Sbjct 78 GATGGACGTACTTTGTCTGACTACAACATTCAAAAGGAGTCCCCTCTTCATCTAGTGTTG 19
Query 206383 AGACTTCG 206390
||||||||
Sbjct 18 AGACTTCG 11
Score = 84.2 bits (92), Expect = 5e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811
||||||||||| || || ||||||| ||||| || || | || ||||||| ||||||
Sbjct 11 CGAAGTCTCAACACTAGATGAAGAGGGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTA 70
Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855
| |||||||||||| ||||| || || | ||| || | ||| ||
Sbjct 71 CGTCCATCTTCCAGTTGCTTGCCAGCAATGATCAGTCTTTGCTG 114
>seq300236
Length=7644
Score = 96.9 bits (106), Expect = 8e-15
Identities = 145/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| || || ||||| || ||||| |||||| |||| ||||| ||||
Sbjct 7417 CAGATCTTTGTAAAGACCCTCACTGGTAAAACCATCACTCTGGAGGTGGAGCCCAGTGAC 7476
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| | || || ||| ||||| ||||||||||| || || || ||| ||
Sbjct 7477 ACCATTGAGAATGTCAAGGGGAAGATACAAGAAAAAGAGGGCATCCCTCCAGACCAGCAG 7536
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
|| | ||||| || || || ||| |||||||||| | || | | || |||||| ||
Sbjct 7537 AGGTTGATCTTTGCGGGGAAACAGCTGGAAGATGGGCGCACCCTTTCTGACTACAACATC 7596
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378
||||||||||| ||||| ||||| ||
Sbjct 7597 CAGAAAGAGTCCACTCTGCACCTGGT 7622
>seq234195
Length=9622
Score = 95.1 bits (104), Expect = 3e-14
Identities = 110/146 (75%), Gaps = 2/146 (1%)
Strand=Plus/Plus
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|||||| ||||| || || || |||||| || || ||| |||||||| ||| |
Sbjct 1749 GTAAAGGCCAAGATCCAGGATAAGGAAGGAGTTCCTCCTGACCAGCAAAGACTGATCATT 1808
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT-TACAACGTCCAGAAAGAGTC 206363
|| |||||| | ||||||||| | | ||||| || || |||||| | |||| |||||
Sbjct 1809 GCTGGAAAGGAACTGGAAGATGAATGTCCTTTG-CCTATCTACAACATTTAGAAGGAGTC 1867
Query 206364 TACTCTTCACCTTGTTTTGAGACTTC 206389
|||||||||||||| ||||||| ||
Sbjct 1868 CACTCTTCACCTTGTGTTGAGACGTC 1893
>seq2409662
Length=152
Score = 91.5 bits (100), Expect = 3e-13
Identities = 95/125 (76%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313
||||| || || || ||||| ||| || ||| || || || ||||| ||||| |||
Sbjct 143 AAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAGCAGAGGCTCATCTTTGCCGGCAAG 84
Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373
||| |||||||||| | ||| | | ||||||||| ||||||||||||| || || |||
Sbjct 83 CAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCGACCCTGCAC 24
Query 206374 CTTGT 206378
|| ||
Sbjct 23 CTGGT 19
>seq66256
Length=6617
Score = 84.2 bits (92), Expect = 5e-11
Identities = 135/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
|| || || || || || || ||||| |||| || || |||||| ||||
Sbjct 1432 AAGACCCTGACCGGCAAGACCATCACCCTGGAGGTAGAGCCCAGTGACACCATCGAGAAC 1491
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||| ||||| || || || ||||| ||| || ||| || || || |||||
Sbjct 1492 GTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAGCAGAGGCTCATCTTT 1551
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
||| | |||||| |||||||||| | ||| | | ||||||||| ||||||||||||
Sbjct 1552 GCCAGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTAG 1611
Query 206365 ACTCTTCACCTTGT 206378
|| || ||||| ||
Sbjct 1612 ACCCTGCACCTGGT 1625
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1135054322445631
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |