Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq185925 109 1e-18 seq2709013 105 2e-17 seq300236 96.9 8e-15 seq234195 95.1 3e-14 seq2409662 91.5 3e-13 seq66256 84.2 5e-11 >seq185925 Length=7279 Score = 109 bits (120), Expect = 1e-18 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || |||||| | || || ||| | || ||| | ||| Sbjct 501 AAGACCCTGACGGGGAAGACCATCACTCTTGAGGTCGAACCCTTGGATACAATAGAAAAT 442 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || ||||||||| || ||| ||||||| |||| Sbjct 441 GTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAAAGACAGATCTGT 382 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||||| |||||| | || |||||| | || || ||||| Sbjct 381 GCTGGCAAGCAACTGGAAGATGGACATACTTTGTCTGACTACAACATTCAAAAGGAGTCC 322 Query 206365 ACTCTTCACCTTGTTTTGAGACTTC 206389 |||||||| || || |||||||||| Sbjct 321 ACTCTTCATCTAGTGTTGAGACTTC 297 >seq2709013 Length=200 Score = 105 bits (116), Expect = 2e-17 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 206203 ACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAA 206262 || |||||| | || | ||| || || ||| | ||| |||||| ||||| || Sbjct 198 ACCATCACTCTCGAGCTTGAACCCTCAGATACAATAGAAAATGTAAAGGCCAAGATCCAG 139 Query 206263 GAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAA 206322 | || ||||||||| || ||| |||||||| ||| | || || ||||| ||||| Sbjct 138 GGTAAGGAAGGAATTCCTCCTGACCAGCAAAGACTGATCATTGCTGGCAAGCAACTGGAA 79 Query 206323 GATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTG 206382 |||||| | |||||| | || |||||| | || || ||||| ||||||| || || ||| Sbjct 78 GATGGACGTACTTTGTCTGACTACAACATTCAAAAGGAGTCCCCTCTTCATCTAGTGTTG 19 Query 206383 AGACTTCG 206390 |||||||| Sbjct 18 AGACTTCG 11 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| || || ||||||| ||||| || || | || ||||||| |||||| Sbjct 11 CGAAGTCTCAACACTAGATGAAGAGGGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTA 70 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | |||||||||||| ||||| || || | ||| || | ||| || Sbjct 71 CGTCCATCTTCCAGTTGCTTGCCAGCAATGATCAGTCTTTGCTG 114 >seq300236 Length=7644 Score = 96.9 bits (106), Expect = 8e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || ||||| || ||||| |||||| |||| ||||| |||| Sbjct 7417 CAGATCTTTGTAAAGACCCTCACTGGTAAAACCATCACTCTGGAGGTGGAGCCCAGTGAC 7476 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| ||||||||||| || || || ||| || Sbjct 7477 ACCATTGAGAATGTCAAGGGGAAGATACAAGAAAAAGAGGGCATCCCTCCAGACCAGCAG 7536 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | ||||| || || || ||| |||||||||| | || | | || |||||| || Sbjct 7537 AGGTTGATCTTTGCGGGGAAACAGCTGGAAGATGGGCGCACCCTTTCTGACTACAACATC 7596 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||||||||| ||||| ||||| || Sbjct 7597 CAGAAAGAGTCCACTCTGCACCTGGT 7622 >seq234195 Length=9622 Score = 95.1 bits (104), Expect = 3e-14 Identities = 110/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || |||||| || || ||| |||||||| ||| | Sbjct 1749 GTAAAGGCCAAGATCCAGGATAAGGAAGGAGTTCCTCCTGACCAGCAAAGACTGATCATT 1808 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGAT-TACAACGTCCAGAAAGAGTC 206363 || |||||| | ||||||||| | | ||||| || || |||||| | |||| ||||| Sbjct 1809 GCTGGAAAGGAACTGGAAGATGAATGTCCTTTG-CCTATCTACAACATTTAGAAGGAGTC 1867 Query 206364 TACTCTTCACCTTGTTTTGAGACTTC 206389 |||||||||||||| ||||||| || Sbjct 1868 CACTCTTCACCTTGTGTTGAGACGTC 1893 >seq2409662 Length=152 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || ||||| ||| || ||| || || || ||||| ||||| ||| Sbjct 143 AAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAGCAGAGGCTCATCTTTGCCGGCAAG 84 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||||||||| | ||| | | ||||||||| ||||||||||||| || || ||| Sbjct 83 CAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCGACCCTGCAC 24 Query 206374 CTTGT 206378 || || Sbjct 23 CTGGT 19 >seq66256 Length=6617 Score = 84.2 bits (92), Expect = 5e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||| || || |||||| |||| Sbjct 1432 AAGACCCTGACCGGCAAGACCATCACCCTGGAGGTAGAGCCCAGTGACACCATCGAGAAC 1491 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||| ||| || ||| || || || ||||| Sbjct 1492 GTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAGCAGAGGCTCATCTTT 1551 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||| | |||||| |||||||||| | ||| | | ||||||||| |||||||||||| Sbjct 1552 GCCAGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTAG 1611 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 1612 ACCCTGCACCTGGT 1625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1135054322445631