Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_025430.1 Length=42351 Score E Sequences producing significant alignments: (Bits) Value seq268701 125 2e-24 seq2799564 113 1e-20 seq2951953 107 5e-19 seq3088487 96.9 9e-16 seq2966539 89.7 1e-13 seq2099341 84.2 6e-12 seq289883 82.4 2e-11 seq2099342 80.6 7e-11 >seq268701 Length=8118 Score = 125 bits (138), Expect = 2e-24 Identities = 145/195 (74%), Gaps = 3/195 (2%) Strand=Plus/Plus Query 217 GCCATTCATGCCCACCACGATTTCAGTTGTGTAGCGATCAACGCCAGCCTGGTCCTGCCA 276 ||| | |||| | ||||||||||| || ||||| || | | ||| | | ||| || Sbjct 7925 GCCTTGCATGTCGACCACGATTTCGGTGGTGTAACGCTTGATGCCGTCTTTTTCC---CA 7981 Query 277 CTTGCGCGTTTGCAGCGCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTACTGGCT 336 || ||| |||||||| |||||||||| | |||| |||||||||||||| | | Sbjct 7982 CTCGCGGGTTTGCAGTTTGCCTTCAATGTAAACCTGCGAACCTTTGCGCAGGTATTCACC 8041 Query 337 GGCGATTTCTGCCAGCTTTCCGAAGATGACCACGCGGTGCCATTCCGTTTTTTCTTTCTT 396 |||||||||||||| ||| ||||| || ||| ||||||||||| ||||| || ||| Sbjct 8042 GGCGATTTCTGCCACCTTGCCGAACATCGACACACGGTGCCATTCGGTTTTCTCGACCTT 8101 Query 397 CTCCCCTGTCTGCTT 411 || || |||||||| Sbjct 8102 CTGGCCAGTCTGCTT 8116 >seq2799564 Length=235 Score = 113 bits (124), Expect = 1e-20 Identities = 113/147 (77%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 274 CCACTTGCGCGTTTGCAGCGCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTACTG 333 ||||| ||| |||||||| |||||| ||| | |||| |||||||||||||||| Sbjct 205 CCACTCGCGGGTTTGCAGTTTGCCTTCGATGTAAACCTGCGAACCTTTGCGCAGGTACTC 146 Query 334 GCTGGCGATTTCTGCCAGCTTTCCGAAGATGACCACGCGGTGCCATTCCGTTTTTTCTTT 393 || |||||| ||||| | ||| ||||| || ||||||||||||||| ||||| || Sbjct 145 GCCGGCGATCTCTGCAACCTTGCCGAACATCGACACGCGGTGCCATTCGGTTTTCTCGAC 86 Query 394 CTTCTCCCCTGTCTGCTTATCCTTCCA 420 ||||| || |||||||| || |||| Sbjct 85 CTTCTGGCCGGTCTGCTTGTCAGTCCA 59 >seq2951953 Length=451 Score = 107 bits (118), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 3/198 (2%) Strand=Plus/Plus Query 223 CATGCCCACCACGATTTCAGTTGTGTAGCGATCAACGCCAGCCTGGTCCTGCCACTTGCG 282 |||| | || ||||||||||| ||||| || | | ||| | | ||| |||| ||| Sbjct 211 CATGTCGACTACGATTTCAGTGGTGTAACGCTTGATGCCGTCTTTTTCC---CACTCGCG 267 Query 283 CGTTTGCAGCGCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTACTGGCTGGCGAT 342 ||||||||| |||||| ||| | |||| |||||||||||||||| | ||||| Sbjct 268 GGTTTGCAGCTTGCCTTCGATGTAGACCTGCGAACCTTTGCGCAGGTACTCACCAGCGAT 327 Query 343 TTCTGCCAGCTTTCCGAAGATGACCACGCGGTGCCATTCCGTTTTTTCTTTCTTCTCCCC 402 ||||| | ||| ||||| | |||||||||||| || ||||| ||||| ||| Sbjct 328 CTCTGCAACCTTGCCGAACAACGACACGCGGTGCCACTCGGTTTTCTCTTTGCGCTCGTT 387 Query 403 TGTCTGCTTATCCTTCCA 420 |||||||| || |||| Sbjct 388 GGTCTGCTTGTCGGTCCA 405 >seq3088487 Length=16894 Score = 96.9 bits (106), Expect = 9e-16 Identities = 174/249 (70%), Gaps = 8/249 (3%) Strand=Plus/Minus Query 32497 CCAGCCGTGCAAACCTGCTGAACGAAAACGAAG-TCACCACCATCATTCGCCAGGACGGT 32555 || |||| || ||||| || ||| || | || ||||||||||||| ||| | | |||| Sbjct 9780 CCTGCCGGGCCAACCTCCTCAAC-AACGCAAACATCACCACCATCATCCGCGACGGCGGT 9722 Query 32556 TTCCGCCTGTGGGGCAACCGCACCACTTCCAGCGATCCGAAATGGGCGTTTCTGTGCGTT 32615 | ||||||||||||||||| || ||| |||||||| ||||| ||| | | Sbjct 9721 TATCGCCTGTGGGGCAACCGTACGCTGTCCTCGGATCCGAAGTGGGCATTTGTCACCCGC 9662 Query 32616 GTTCGCACGGCTGACATCATCAATGAC---AGCCTGTTGCGTGCACACCTGTGGGCCGTA 32672 || ||||| | || ||| ||| ||| | || | || | |||| ||||| || Sbjct 9661 GTGCGCACCGTGGATATCGTCATGGACGCGATCC--TCGC-CGGACACAAATGGGCAGTC 9605 Query 32673 GACCGTGGCATCACCAAACAATACGTCAATGACGTGATTGAAGGCGTGAACGCGTACCTG 32732 ||||||||||||||||| ||| |||| || |||| || ||| || | |||| | || Sbjct 9604 GACCGTGGCATCACCAAGACCTACATCAAGGATGTGACCGACGGCCTGCAGGCGTTCATG 9545 Query 32733 CGCAACCTG 32741 | ||||| Sbjct 9544 CAGGACCTG 9536 >seq2966539 Length=502 Score = 89.7 bits (98), Expect = 1e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 32487 GGTGACACGTCCAGCCGTGCAAACCTGCTGAACGAAAACGAAGTCACCACCATCATTCGC 32546 |||||| | | ||||||| |||||||||||| | | | || | || ||||||||| Sbjct 363 GGTGACGAGACGTGCCGTGCCAACCTGCTGAACAACGCCAATATCGCGACGATCATTCGC 422 Query 32547 CAGGACGGTTTCCGCCTGTGGGGCAACCGCACCACTTCCAGCGATCCGAAATGGGCGTT 32605 | ||||| | |||| |||||||||||||||| ||| || |||||||| ||||| || Sbjct 423 GATGACGGCTACCGCTTGTGGGGCAACCGCACGCTTTCGAGTGATCCGAAGTGGGCATT 481 >seq2099341 Length=127 Score = 84.2 bits (92), Expect = 6e-12 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 317 CCTTTGCGCAGGTACTGGCTGGCGATTTCTGCCAGCTTTCCGAAGATGACCACGCGGTGC 376 |||||||||||||||| | |||||| || |||| || ||||| || |||||||||| Sbjct 121 CCTTTGCGCAGGTACTCACCGGCGATCTCGGCCACTTTGCCGAACATCGACACGCGGTGC 62 Query 377 CATTCCGTTTTTTCTTTCTTCTCCCCTGTCTGCTTATCCTTCCA 420 ||||| ||||| || ||||| || |||||||| || |||| Sbjct 61 CATTCGGTTTTCTCGACCTTCTGGCCAGTCTGCTTGTCGGTCCA 18 >seq289883 Length=477 Score = 82.4 bits (90), Expect = 2e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 32533 CCACCATCATTCGCCAGGACGGTTTCCGCCTGTGGGGCAACCGCACCACTTCCAGCGATC 32592 |||||||||||||| | ||||| | ||||||||||||||| || || |||||| ||| Sbjct 337 CCACCATCATTCGCGATGACGGCTACCGCCTGTGGGGCAATCGTACGCTTTCCAGTGATG 396 Query 32593 CGAAATGGGCGTTTCTGTGCGTTGTTCGCACGGCTGACATCATCA 32637 |||||||||| || | | ||||||||| | || ||| ||| Sbjct 397 CGAAATGGGCATTCGTTACCCGTGTTCGCACCGTCGATATCGTCA 441 >seq2099342 Length=127 Score = 80.6 bits (88), Expect = 7e-11 Identities = 80/104 (77%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 317 CCTTTGCGCAGGTACTGGCTGGCGATTTCTGCCAGCTTTCCGAAGATGACCACGCGGTGC 376 |||||||||||||||| | |||||| || |||| || ||||| || ||||||| || Sbjct 121 CCTTTGCGCAGGTACTCACCGGCGATCTCGGCCACTTTGCCGAACATCGACACGCGGGGC 62 Query 377 CATTCCGTTTTTTCTTTCTTCTCCCCTGTCTGCTTATCCTTCCA 420 ||||| ||||| || ||||| || |||||||| || |||| Sbjct 61 CATTCGGTTTTCTCGACCTTCTGGCCAGTCTGCTTGTCGGTCCA 18 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130435601694166