Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_025430.1
Length=42351
Score E
Sequences producing significant alignments: (Bits) Value
seq268701 125 2e-24
seq2799564 113 1e-20
seq2951953 107 5e-19
seq3088487 96.9 9e-16
seq2966539 89.7 1e-13
seq2099341 84.2 6e-12
seq289883 82.4 2e-11
seq2099342 80.6 7e-11
>seq268701
Length=8118
Score = 125 bits (138), Expect = 2e-24
Identities = 145/195 (74%), Gaps = 3/195 (2%)
Strand=Plus/Plus
Query 217 GCCATTCATGCCCACCACGATTTCAGTTGTGTAGCGATCAACGCCAGCCTGGTCCTGCCA 276
||| | |||| | ||||||||||| || ||||| || | | ||| | | ||| ||
Sbjct 7925 GCCTTGCATGTCGACCACGATTTCGGTGGTGTAACGCTTGATGCCGTCTTTTTCC---CA 7981
Query 277 CTTGCGCGTTTGCAGCGCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTACTGGCT 336
|| ||| |||||||| |||||||||| | |||| |||||||||||||| | |
Sbjct 7982 CTCGCGGGTTTGCAGTTTGCCTTCAATGTAAACCTGCGAACCTTTGCGCAGGTATTCACC 8041
Query 337 GGCGATTTCTGCCAGCTTTCCGAAGATGACCACGCGGTGCCATTCCGTTTTTTCTTTCTT 396
|||||||||||||| ||| ||||| || ||| ||||||||||| ||||| || |||
Sbjct 8042 GGCGATTTCTGCCACCTTGCCGAACATCGACACACGGTGCCATTCGGTTTTCTCGACCTT 8101
Query 397 CTCCCCTGTCTGCTT 411
|| || ||||||||
Sbjct 8102 CTGGCCAGTCTGCTT 8116
>seq2799564
Length=235
Score = 113 bits (124), Expect = 1e-20
Identities = 113/147 (77%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 274 CCACTTGCGCGTTTGCAGCGCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTACTG 333
||||| ||| |||||||| |||||| ||| | |||| ||||||||||||||||
Sbjct 205 CCACTCGCGGGTTTGCAGTTTGCCTTCGATGTAAACCTGCGAACCTTTGCGCAGGTACTC 146
Query 334 GCTGGCGATTTCTGCCAGCTTTCCGAAGATGACCACGCGGTGCCATTCCGTTTTTTCTTT 393
|| |||||| ||||| | ||| ||||| || ||||||||||||||| ||||| ||
Sbjct 145 GCCGGCGATCTCTGCAACCTTGCCGAACATCGACACGCGGTGCCATTCGGTTTTCTCGAC 86
Query 394 CTTCTCCCCTGTCTGCTTATCCTTCCA 420
||||| || |||||||| || ||||
Sbjct 85 CTTCTGGCCGGTCTGCTTGTCAGTCCA 59
>seq2951953
Length=451
Score = 107 bits (118), Expect = 5e-19
Identities = 143/198 (72%), Gaps = 3/198 (2%)
Strand=Plus/Plus
Query 223 CATGCCCACCACGATTTCAGTTGTGTAGCGATCAACGCCAGCCTGGTCCTGCCACTTGCG 282
|||| | || ||||||||||| ||||| || | | ||| | | ||| |||| |||
Sbjct 211 CATGTCGACTACGATTTCAGTGGTGTAACGCTTGATGCCGTCTTTTTCC---CACTCGCG 267
Query 283 CGTTTGCAGCGCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTACTGGCTGGCGAT 342
||||||||| |||||| ||| | |||| |||||||||||||||| | |||||
Sbjct 268 GGTTTGCAGCTTGCCTTCGATGTAGACCTGCGAACCTTTGCGCAGGTACTCACCAGCGAT 327
Query 343 TTCTGCCAGCTTTCCGAAGATGACCACGCGGTGCCATTCCGTTTTTTCTTTCTTCTCCCC 402
||||| | ||| ||||| | |||||||||||| || ||||| ||||| |||
Sbjct 328 CTCTGCAACCTTGCCGAACAACGACACGCGGTGCCACTCGGTTTTCTCTTTGCGCTCGTT 387
Query 403 TGTCTGCTTATCCTTCCA 420
|||||||| || ||||
Sbjct 388 GGTCTGCTTGTCGGTCCA 405
>seq3088487
Length=16894
Score = 96.9 bits (106), Expect = 9e-16
Identities = 174/249 (70%), Gaps = 8/249 (3%)
Strand=Plus/Minus
Query 32497 CCAGCCGTGCAAACCTGCTGAACGAAAACGAAG-TCACCACCATCATTCGCCAGGACGGT 32555
|| |||| || ||||| || ||| || | || ||||||||||||| ||| | | ||||
Sbjct 9780 CCTGCCGGGCCAACCTCCTCAAC-AACGCAAACATCACCACCATCATCCGCGACGGCGGT 9722
Query 32556 TTCCGCCTGTGGGGCAACCGCACCACTTCCAGCGATCCGAAATGGGCGTTTCTGTGCGTT 32615
| ||||||||||||||||| || ||| |||||||| ||||| ||| | |
Sbjct 9721 TATCGCCTGTGGGGCAACCGTACGCTGTCCTCGGATCCGAAGTGGGCATTTGTCACCCGC 9662
Query 32616 GTTCGCACGGCTGACATCATCAATGAC---AGCCTGTTGCGTGCACACCTGTGGGCCGTA 32672
|| ||||| | || ||| ||| ||| | || | || | |||| ||||| ||
Sbjct 9661 GTGCGCACCGTGGATATCGTCATGGACGCGATCC--TCGC-CGGACACAAATGGGCAGTC 9605
Query 32673 GACCGTGGCATCACCAAACAATACGTCAATGACGTGATTGAAGGCGTGAACGCGTACCTG 32732
||||||||||||||||| ||| |||| || |||| || ||| || | |||| | ||
Sbjct 9604 GACCGTGGCATCACCAAGACCTACATCAAGGATGTGACCGACGGCCTGCAGGCGTTCATG 9545
Query 32733 CGCAACCTG 32741
| |||||
Sbjct 9544 CAGGACCTG 9536
>seq2966539
Length=502
Score = 89.7 bits (98), Expect = 1e-13
Identities = 91/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 32487 GGTGACACGTCCAGCCGTGCAAACCTGCTGAACGAAAACGAAGTCACCACCATCATTCGC 32546
|||||| | | ||||||| |||||||||||| | | | || | || |||||||||
Sbjct 363 GGTGACGAGACGTGCCGTGCCAACCTGCTGAACAACGCCAATATCGCGACGATCATTCGC 422
Query 32547 CAGGACGGTTTCCGCCTGTGGGGCAACCGCACCACTTCCAGCGATCCGAAATGGGCGTT 32605
| ||||| | |||| |||||||||||||||| ||| || |||||||| ||||| ||
Sbjct 423 GATGACGGCTACCGCTTGTGGGGCAACCGCACGCTTTCGAGTGATCCGAAGTGGGCATT 481
>seq2099341
Length=127
Score = 84.2 bits (92), Expect = 6e-12
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 317 CCTTTGCGCAGGTACTGGCTGGCGATTTCTGCCAGCTTTCCGAAGATGACCACGCGGTGC 376
|||||||||||||||| | |||||| || |||| || ||||| || ||||||||||
Sbjct 121 CCTTTGCGCAGGTACTCACCGGCGATCTCGGCCACTTTGCCGAACATCGACACGCGGTGC 62
Query 377 CATTCCGTTTTTTCTTTCTTCTCCCCTGTCTGCTTATCCTTCCA 420
||||| ||||| || ||||| || |||||||| || ||||
Sbjct 61 CATTCGGTTTTCTCGACCTTCTGGCCAGTCTGCTTGTCGGTCCA 18
>seq289883
Length=477
Score = 82.4 bits (90), Expect = 2e-11
Identities = 81/105 (77%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 32533 CCACCATCATTCGCCAGGACGGTTTCCGCCTGTGGGGCAACCGCACCACTTCCAGCGATC 32592
|||||||||||||| | ||||| | ||||||||||||||| || || |||||| |||
Sbjct 337 CCACCATCATTCGCGATGACGGCTACCGCCTGTGGGGCAATCGTACGCTTTCCAGTGATG 396
Query 32593 CGAAATGGGCGTTTCTGTGCGTTGTTCGCACGGCTGACATCATCA 32637
|||||||||| || | | ||||||||| | || ||| |||
Sbjct 397 CGAAATGGGCATTCGTTACCCGTGTTCGCACCGTCGATATCGTCA 441
>seq2099342
Length=127
Score = 80.6 bits (88), Expect = 7e-11
Identities = 80/104 (77%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 317 CCTTTGCGCAGGTACTGGCTGGCGATTTCTGCCAGCTTTCCGAAGATGACCACGCGGTGC 376
|||||||||||||||| | |||||| || |||| || ||||| || ||||||| ||
Sbjct 121 CCTTTGCGCAGGTACTCACCGGCGATCTCGGCCACTTTGCCGAACATCGACACGCGGGGC 62
Query 377 CATTCCGTTTTTTCTTTCTTCTCCCCTGTCTGCTTATCCTTCCA 420
||||| ||||| || ||||| || |||||||| || ||||
Sbjct 61 CATTCGGTTTTCTCGACCTTCTGGCCAGTCTGCTTGTCGGTCCA 18
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 130435601694166
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |