Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_025466.1 Length=40161 Score E Sequences producing significant alignments: (Bits) Value seq3084832 118 3e-22 >seq3084832 Length=3091 Score = 118 bits (130), Expect = 3e-22 Identities = 305/458 (67%), Gaps = 14/458 (3%) Strand=Plus/Plus Query 6209 GACATTATTCTTAAGGCTAGGCAGTTAGGCTTTACCACGTTCAAAATGATCCACGATTTG 6268 |||||||| || |||||| | ||| | || || ||||||||| | |||||| ||| | Sbjct 2159 GACATTATCCTCAAGGCTCGCCAGCTTGGATTCACCACGTTCGAGATGATCGACGCGCTC 2218 Query 6269 GATTCGTGCCTGTTTAGAAAAAACTTTTCGGCCGGCTGTATTGCGCATAGCGATAAAG-A 6327 || ||||| || | || |||| || ||||| ||| || | || | | | Sbjct 2219 GACGATTGCCTCTTCACCAAGAACTACAGCGCAGGCTGCATTTGCCACA-CGCTGCCGGA 2277 Query 6328 CTCAAAGGATATTTACAGAAACAAGATACGGTTTGCTTATGAG--GCTATTACGCCAA-- 6383 | | || || || ||| | |||||||| ||||||| || || ||| | | || | Sbjct 2278 CGCCAAAGAGATCTACCGCAACAAGATCAGGTTTGCCTACGAAAAGCTGTCAGGCGATCC 2337 Query 6384 AGGTTAA--GAAACTGCTTGAGTTGATTGGGTATGGGCTGCCTACACCAAGGAATGACAA 6441 || || | | | || || |||| || | | ||||| || | | ||||| Sbjct 2338 AGCTTGGTCGGCAATATTTAAGCTGATCGGCTTGCGTCTGCCAGTGCCGCGCAGCGACAA 2397 Query 6442 AGATAACGGCTACGTGTTTACCAATGGTTCTAGTATCGGTGTATCAACTGGCTATCGTGG 6501 ||| | || ||| | || |||||| || |||||| || || || | |||||| Sbjct 2398 GGATCAGGGTTACATTTTCGACAATGGCTCAAGTATCCAGGTGTCGACGTCGTTTCGTGG 2457 Query 6502 TGGCACACTTCAAAGCTTGCATGTTTCGGAGTTCGGAAAGATATGCAAAAAGTATCCAGA 6561 |||||| || || | ||||||| ||||||||||| |||||||||||| | || || Sbjct 2458 TGGCACGCTCCAGCGGCTGCATGTGTCGGAGTTCGGCAAGATATGCAAACTGAGCCCGGA 2517 Query 6562 GAAAGCACAGGAGATTGTTACAGGTGCGTTTAACTCAGTAGGC---AAGAATGGCACGAT 6618 || || ||||| || || || ||||||||| | | || ||| |||| | | | Sbjct 2518 CAAGGCTCAGGAAATCGTCACCGGTGCGTTTGAGGCGGTTGGCCTGGGGAATCG---GGT 2574 Query 6619 AACAATCGAAAGTACCGCAGAGGGTAAGCAGGGTTACT 6656 ||||||||||||||||| ||||| ||||||||| Sbjct 2575 CACAATCGAAAGTACCGCCGAGGGCCGTGAGGGTTACT 2612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123684627579586