Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq20229 100 3e-16 seq300236 89.7 5e-13 >seq20229 Length=11930 Score = 100 bits (110), Expect = 3e-16 Identities = 81/98 (83%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 147505 TACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTG 147564 |||| ||| ||||| | |||||||||||||||||| ||| |||||| || ||||| ||| Sbjct 4844 TACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAAGTTCTGCTGGTTG 4903 Query 147565 CTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGG 147602 || |||||||| || | |||||| |||||||||| || Sbjct 4904 CTCTTCCGATTACAGGAATCTTTGTAGAGCATGTATGG 4941 >seq300236 Length=7644 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || ||||||||||| | ||| ||| |||||| |||||||| || | | Sbjct 7607 GACTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCA 7548 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | | ||| || |||||||| ||||| ||||| || || || || | Sbjct 7547 AAGATCAACCTCTGCTGGTCTGGAGGGATGCCCTCTTTTTCTTGTATCTTCCCCTTGACA 7488 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | |||||||| || | || | ||||||||||| || || ||| Sbjct 7487 TTCTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTTTTACCAGTGAGGGTCTTT 7428 Query 132110 ATGAAAATCTGCAT 132123 | || |||||||| Sbjct 7427 ACAAAGATCTGCAT 7414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 458210963325960