Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq153451 260 2e-64 seq2585192 165 9e-36 seq116363 161 1e-34 seq8369 136 4e-27 seq14698 132 5e-26 seq1495313 113 5e-20 seq94308 100 3e-16 seq1430582 96.9 4e-15 >seq153451 Length=22869 Score = 260 bits (288), Expect = 2e-64 Identities = 249/319 (78%), Gaps = 0/319 (0%) Strand=Plus/Plus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 |||||||||||||| | | | ||||||||||| || || || | | |||||| ||| Sbjct 9017 GTGGTGACCCAGGACGTAAAAGCACTGCTGAACACACCTGCTTCTTTAAGATGCTCTCTG 9076 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 || | | | || || || ||||||| || ||||| ||||||||| | | ||||| Sbjct 9077 CAAAATCCCCAAGAAGTTTTGATTGTGACATGGCAAAAAATCAAGGCTGTAAGCCCAGAA 9136 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||| | || | ||| | ||| ||||| || |||||||| || || ||||||||| Sbjct 9137 AACATGCTCACCTACAGCGAGAGCCATGGGGTTGTAGTCCAGCCTGCCTACAAGGACAAG 9196 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 |||||||||||||||||||||||| ||||||||||| || || |||||||||||||| Sbjct 9197 ATAAACATCACCCAGCTTGGACTCATGAACTCAACCATTACCTTCTGGAATACCACCTTG 9256 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 ||||| |||| ||| ||||| ||||||||||| | |||||| ||||| || ||||| || Sbjct 9257 GAGGATGAGGCGTGTTACAAGTGCCTCTTTAATATCTTTGGTTCTGGAAAGATCTCAGGA 9316 Query 171372 GTGGCCTGCCTCACCCTCT 171390 | ||||||||||| |||| Sbjct 9317 ATAGCCTGCCTCACTCTCT 9335 Score = 188 bits (208), Expect = 8e-43 Identities = 208/277 (75%), Gaps = 0/277 (0%) Strand=Plus/Plus Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452 || |||||||| || || || || |||||||| | ||| || ||||| || ||||| || Sbjct 11655 GTACAGCCCACAGTATTCCTTCACTATAAATTATCTGAAGATCACCTAAATATCACTTGC 11714 Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512 ||||||||||| ||||| | ||| ||| | ||||| | || || |||| |||| Sbjct 11715 TCTGCCAATGCTCGCCCAGCCCCTATGATCTCCTGGAATGTCTCTGGATCAGGGGTTGAG 11774 Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572 ||||||| |||| | | || || | |||||||| || ||||| ||||| | ||||| Sbjct 11775 AACAGTACCGAGATCATCTCACACCCCAATGGAACAACATCTGTCACCAGCATCCTCCAG 11834 Query 171573 GTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGGA 171632 | |||||||||||| | ||| |||| ||||| || |||||||| ||| |||||||| Sbjct 11835 ATCAAAGACCCCAAGGGACAGGTGGGGAAGGATGTGATCTGCCAGGTGCTACACCTGGGG 11894 Query 171633 AATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTA 171669 | ||| ||| ||| ||||||||||| | ||| |||| Sbjct 11895 ACTGTGACTGACTACAGGGAAACTGTGAACAAAGGTA 11931 >seq2585192 Length=178 Score = 165 bits (182), Expect = 9e-36 Identities = 136/166 (82%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||| | || | ||| || | ||||||||||||||| | |||||||| |||||||| Sbjct 1 CTTCAGGTCCGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAA 60 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || |||||||||||||| ||||||| |||||||| |||||| || |||||||| | Sbjct 61 GGGCACACCCAGGCCCATGTCTCCCGACCGCTGGTACAACTGGCAGGACAGCTCCCCATT 120 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATG 147147 ||||||| |||||||| ||| ||||||||| || || |||||| Sbjct 121 CACCACGTAGAACTGGCAGAGGGCGTGGCACGGGGGGAGGGCCATG 166 >seq116363 Length=44347 Score = 161 bits (178), Expect = 1e-34 Identities = 146/184 (79%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||| | || | ||| || | ||||||||||||||| | |||||||| |||||||| Sbjct 21713 CTTCAGGTCCGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAA 21654 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || |||||||||||||| |||| || |||||||| |||||| || |||||||| | Sbjct 21653 GGGCACACCCAGGCCCATGTCTCCCGGCCGCTGGTACAACTGGCAGGACAGCTCCCCATT 21594 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGC 147161 ||||||| |||||||| ||| ||||||||| || || |||||| || || || | Sbjct 21593 CTCCACGTAGAACTGGCAGAGGGCGTGGCACGGGGGGAGGGCCATGAGAGGGAGATCTGA 21534 Query 147162 GGGG 147165 |||| Sbjct 21533 GGGG 21530 >seq8369 Length=31304 Score = 136 bits (150), Expect = 4e-27 Identities = 535/833 (64%), Gaps = 60/833 (7%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 ||| || |||||||| || |||| | | ||||||| ||||| | | | |||| Sbjct 2688 GTATTCCCTGGTGTTCATGATTGGTTTGCTGGGCAATGTAGTGGTGGTGGTGATTCTCAC 2629 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 ||| |||||||||||| | || ||||||||||||| |||| ||||| ||||| || ||| Sbjct 2628 AAAATACAAGAGGCTCCGTATTATGACCAACATCTACCTGCTCAACTTGGCCATTTCTGA 2569 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789 |||| | | ||||| || || || |||||||||| | || ||||| | Sbjct 2568 TGTGCTCTTCCTATTCACGCTGCCATTCTGGATTCACT--ATGTTAGGTGGAAC----GA 2515 Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849 ||||| | |||| ||||||||| || | || || | || ||| | |||| Sbjct 2514 GTGGGTTTTTGGCCACTCCATGTGTAAATTGCTCTCTGGGCTCTATTACATGGGATTGTA 2455 Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACGC 8909 ||| || || | || |||||||| ||||| | ||| ||||||| || | || |||| Sbjct 2454 CAGTGAGATCTTCTTCATCATCCTCTTGACCATAGACCGGTATCTGGCCATCGTCCACGC 2395 Query 8910 GGTGGCTTACAGGCTGGTCCGCGTGGTACCAATAGGCATCCTCGCCAGCCTCCTGGCCTG 8969 ||| | | | | ||| || | | || ||| || | ||| || | |||| Sbjct 2394 CGTGTTTGCCCTTCGAGCCCGTACAGTCACTTTTGGAATCGTCACTAGCATCTTCACCTG 2335 Query 8970 GATTCTGGCTGTGTTGGGAACCATGCCAGAGTTTATCTTTTATGAATCCAATAATGCCAC 9029 | ||||| ||| | | | || | || |||||| ||||| |||| ||| | | | | Sbjct 2334 GGGCCTGGCAGTGCTAGCAGCCCTCCCTGAGTTTTTCTTTCATGAGTCCCAAGAGGAGGC 2275 Query 9030 AGGCAAGGGGGTCTGCCAAGCCTC-CTACACAGACTTT------------TGGAAGGGGG 9076 || || |||| || |||| ||| |||| | |||||| | Sbjct 2274 TGGACAGACTATCTG-CAGTCCTCTTTACCCAGAGGATAATGAAAATGCCTGGAAGCGTT 2216 Query 9077 TTGATGTTACCAGCATGA----CCATGGTCACCCTCATCCTGCCTTTGCTTATCATGGCC 9132 | ||| | || |||| || |||| || |||||| |||| || |||| | Sbjct 2215 TCCATGCTCTGAGAATGAATATCCTGGGTCTTGCT----CTGCCTCTGCTCATTATGGTC 2160 Query 9133 TTCTGCTACTGGAAAATCATCAAGGTCCTCCTCA-AGGCCCACAACAGGTCGAGAAACCT 9191 ||||||| | ||| || || || || | | |||| || || | ||| | Sbjct 2159 ATCTGCTATTCAGGAATTATTAAAACACTGCTGAGATGCCC-CA----GTAAAAAAAAAT 2105 Query 9192 GC-ACGCCGTCAAGCTCATTTTGATCATGGTGGTGCTTTATTTTGTCTTTTGGATCCCCT 9250 | | ||| || ||||||||| |||| ||||| | | ||| | || |||| |||| Sbjct 2104 ACAAAGCCATCCGGCTCATTTTTGTCATTATGGTGGTCTTCTTTATTTTCTGGACACCCT 2045 Query 9251 ACAA------CGTCCTGCTC---ATTTTACACACCTACCAAGAGGCCATTTTTGGGCCAG 9301 |||| |||||| ||| ||| || | ||| |||||| | Sbjct 2044 ACAATCTAGTCGTCCTACTCTCTGCTTTTCAAATGCACCTGGAGGCC------------G 1997 Query 9302 ACTGTGA--AGCGCGGCGCAGGGTGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTG 9359 ||||||| || || | ||| | ||||| ||||| | ||||| | ||| ||||||||| Sbjct 1996 ACTGTGAGCAGAGCAG-GCA-GCTGGACCTGGCCATGCTGGTGACAGAGGTGATCGCCTA 1939 Query 9360 CACCCACTGCTGCGTCAACCCCGTCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412 ||| |||||||| |||||||| || |||||||| || || ||||| | ||||| Sbjct 1938 CACGCACTGCTGTGTCAACCCTGTGATCTACGCCTTCGTCGGCGAGAGGTTCC 1886 >seq14698 Length=29873 Score = 132 bits (146), Expect = 5e-26 Identities = 128/167 (77%), Gaps = 12/167 (7%) Strand=Plus/Minus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| |||||||| || ||||| ||||||||| |||||||||||| Sbjct 14200 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAAATGATCCAGTTTTACCTGGAGGAGGTGA 14141 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| ||||| || || || || || |||||||| || |||| Sbjct 14140 TGCCACAGGCTGAGAACCA------------TGGGCCTGAGATCAAGGAGCACGTGAACT 14093 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | |||||||| ||||| |||||||| | || | ||| |||| ||| Sbjct 14092 CACTGGGGGAGAAGCTGAAGACCCTCCGGCTGCGACTGAGGCGCTGT 14046 Score = 105 bits (116), Expect = 8e-18 Identities = 122/167 (73%), Gaps = 12/167 (7%) Strand=Plus/Plus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||| | | ||||||| |||||||| || |||| || |||||| |||||||||||| Sbjct 18862 AGGGTTTCCAGAGTTGCCAAGCCTTGTCGGAAGTGATCCACTTTTACCTGGAGGAGGTGA 18921 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| ||||| | || || || || |||||||| || |||| Sbjct 18922 TGCCACAGGCTGAGAACTA------------TGGGCCTGAGATCAAGGAGCACGTGAACT 18969 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | |||||||| ||||| |||||||| | || | ||| |||| ||| Sbjct 18970 CGCTGGGGGAGAAGCTGAAGACCCTCCGGCTGCGACTGAGGCGCTGT 19016 Score = 95.1 bits (104), Expect = 1e-14 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| | |||||| |||||||| |||||||||||||| || || || ||||||| Sbjct 11881 AGCTCCAAGAGAGGGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 11822 Query 178522 TAGAAGCTTACATGACAACAAAAATGA 178548 ||||| | |||||||||| || |||| Sbjct 11821 TAGAAACCTACATGACAATGAAGATGA 11795 >seq1495313 Length=124 Score = 113 bits (124), Expect = 5e-20 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 146923 GGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGC 146982 ||||| | ||| || ||||| ||||| || || ||||| ||||| |||||||| || ||| Sbjct 122 GGCTCGATGTGATTCAGGTAAACGTGTGCATCTCCCAGAGTGTGTACAAAGTCACCTGGC 63 Query 146983 TTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAG 147042 || ||| | || | ||| || | ||||||||||||||| | |||||||| ||||||||| Sbjct 62 TTCAGGTCCGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAG 3 Query 147043 GG 147044 || Sbjct 2 GG 1 >seq94308 Length=11447 Score = 100 bits (110), Expect = 3e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| ||||||| | |||| || || ||||| ||| ||| |||| |||||||| Sbjct 11107 GTACTCGGCGGTGTTTGTCATTGGCCTGATCGGCAACATCCTAGTGGTCCTGGTCCTCAT 11048 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 |||||||||| ||||| | |||||||| ||||| ||| ||||||||||| || ||| Sbjct 11047 GCAGTACAAGAGACTCAGAAGCATGACCAGCATCTACCTCCTCAACCTGGCCATTTCTGA 10988 Query 8730 CCT 8732 ||| Sbjct 10987 CCT 10985 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 9323 TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCGTCAACCCCG 9382 ||||| ||||| | |||| | ||| ||||||||| ||| ||||||||||||||||| | Sbjct 10350 TGGACCTGGCCATTCAGGTGACGGAGGTGATCGCCTACACTCACTGCTGCGTCAACCCTG 10291 Query 9383 TCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412 | ||||| | ||||| ||||| | ||||| Sbjct 10290 TAATCTATGTCTTTGTTGGCGAGAGGTTCC 10261 >seq1430582 Length=123 Score = 96.9 bits (106), Expect = 4e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 147374 ACCCGTGGGCGTCCCAGATGCCCACTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGC 147433 |||||| ||| ||||| || ||||||||||| || || ||||||| || ||||| | Sbjct 1 ACCCGTTGGCATCCCAAATTTTCACTCCCTTGGAAGACAGTTCCTTAGCGTTGGTGGATC 60 Query 147434 CCCGGATGAACCAGAGCAGCTCCTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCA 147493 || ||| ||||| |||| |||||||||||| || |||| || || | ||||| |||| Sbjct 61 CCTTGATAAACCACAGCAACTCCTCCAAAACACCTTTCCAGAACACACGTTTGGTTGTCA 120 Query 147494 GCA 147496 ||| Sbjct 121 GCA 123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560961636170400