Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_026421.1
Length=182380
Score E
Sequences producing significant alignments: (Bits) Value
seq153451 260 2e-64
seq2585192 165 9e-36
seq116363 161 1e-34
seq8369 136 4e-27
seq14698 132 5e-26
seq1495313 113 5e-20
seq94308 100 3e-16
seq1430582 96.9 4e-15
>seq153451
Length=22869
Score = 260 bits (288), Expect = 2e-64
Identities = 249/319 (78%), Gaps = 0/319 (0%)
Strand=Plus/Plus
Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131
|||||||||||||| | | | ||||||||||| || || || | | |||||| |||
Sbjct 9017 GTGGTGACCCAGGACGTAAAAGCACTGCTGAACACACCTGCTTCTTTAAGATGCTCTCTG 9076
Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191
|| | | | || || || ||||||| || ||||| ||||||||| | | |||||
Sbjct 9077 CAAAATCCCCAAGAAGTTTTGATTGTGACATGGCAAAAAATCAAGGCTGTAAGCCCAGAA 9136
Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251
|||||| | || | ||| | ||| ||||| || |||||||| || || |||||||||
Sbjct 9137 AACATGCTCACCTACAGCGAGAGCCATGGGGTTGTAGTCCAGCCTGCCTACAAGGACAAG 9196
Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311
|||||||||||||||||||||||| ||||||||||| || || ||||||||||||||
Sbjct 9197 ATAAACATCACCCAGCTTGGACTCATGAACTCAACCATTACCTTCTGGAATACCACCTTG 9256
Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371
||||| |||| ||| ||||| ||||||||||| | |||||| ||||| || ||||| ||
Sbjct 9257 GAGGATGAGGCGTGTTACAAGTGCCTCTTTAATATCTTTGGTTCTGGAAAGATCTCAGGA 9316
Query 171372 GTGGCCTGCCTCACCCTCT 171390
| ||||||||||| ||||
Sbjct 9317 ATAGCCTGCCTCACTCTCT 9335
Score = 188 bits (208), Expect = 8e-43
Identities = 208/277 (75%), Gaps = 0/277 (0%)
Strand=Plus/Plus
Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452
|| |||||||| || || || || |||||||| | ||| || ||||| || ||||| ||
Sbjct 11655 GTACAGCCCACAGTATTCCTTCACTATAAATTATCTGAAGATCACCTAAATATCACTTGC 11714
Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512
||||||||||| ||||| | ||| ||| | ||||| | || || |||| ||||
Sbjct 11715 TCTGCCAATGCTCGCCCAGCCCCTATGATCTCCTGGAATGTCTCTGGATCAGGGGTTGAG 11774
Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572
||||||| |||| | | || || | |||||||| || ||||| ||||| | |||||
Sbjct 11775 AACAGTACCGAGATCATCTCACACCCCAATGGAACAACATCTGTCACCAGCATCCTCCAG 11834
Query 171573 GTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGGA 171632
| |||||||||||| | ||| |||| ||||| || |||||||| ||| ||||||||
Sbjct 11835 ATCAAAGACCCCAAGGGACAGGTGGGGAAGGATGTGATCTGCCAGGTGCTACACCTGGGG 11894
Query 171633 AATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTA 171669
| ||| ||| ||| ||||||||||| | ||| ||||
Sbjct 11895 ACTGTGACTGACTACAGGGAAACTGTGAACAAAGGTA 11931
>seq2585192
Length=178
Score = 165 bits (182), Expect = 9e-36
Identities = 136/166 (82%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041
||| ||| | || | ||| || | ||||||||||||||| | |||||||| ||||||||
Sbjct 1 CTTCAGGTCCGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAA 60
Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101
||| || |||||||||||||| ||||||| |||||||| |||||| || |||||||| |
Sbjct 61 GGGCACACCCAGGCCCATGTCTCCCGACCGCTGGTACAACTGGCAGGACAGCTCCCCATT 120
Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATG 147147
||||||| |||||||| ||| ||||||||| || || ||||||
Sbjct 121 CACCACGTAGAACTGGCAGAGGGCGTGGCACGGGGGGAGGGCCATG 166
>seq116363
Length=44347
Score = 161 bits (178), Expect = 1e-34
Identities = 146/184 (79%), Gaps = 0/184 (0%)
Strand=Plus/Minus
Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041
||| ||| | || | ||| || | ||||||||||||||| | |||||||| ||||||||
Sbjct 21713 CTTCAGGTCCGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAA 21654
Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101
||| || |||||||||||||| |||| || |||||||| |||||| || |||||||| |
Sbjct 21653 GGGCACACCCAGGCCCATGTCTCCCGGCCGCTGGTACAACTGGCAGGACAGCTCCCCATT 21594
Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGC 147161
||||||| |||||||| ||| ||||||||| || || |||||| || || || |
Sbjct 21593 CTCCACGTAGAACTGGCAGAGGGCGTGGCACGGGGGGAGGGCCATGAGAGGGAGATCTGA 21534
Query 147162 GGGG 147165
||||
Sbjct 21533 GGGG 21530
>seq8369
Length=31304
Score = 136 bits (150), Expect = 4e-27
Identities = 535/833 (64%), Gaps = 60/833 (7%)
Strand=Plus/Minus
Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669
||| || |||||||| || |||| | | ||||||| ||||| | | | ||||
Sbjct 2688 GTATTCCCTGGTGTTCATGATTGGTTTGCTGGGCAATGTAGTGGTGGTGGTGATTCTCAC 2629
Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729
||| |||||||||||| | || ||||||||||||| |||| ||||| ||||| || |||
Sbjct 2628 AAAATACAAGAGGCTCCGTATTATGACCAACATCTACCTGCTCAACTTGGCCATTTCTGA 2569
Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789
|||| | | ||||| || || || |||||||||| | || ||||| |
Sbjct 2568 TGTGCTCTTCCTATTCACGCTGCCATTCTGGATTCACT--ATGTTAGGTGGAAC----GA 2515
Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849
||||| | |||| ||||||||| || | || || | || ||| | ||||
Sbjct 2514 GTGGGTTTTTGGCCACTCCATGTGTAAATTGCTCTCTGGGCTCTATTACATGGGATTGTA 2455
Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACGC 8909
||| || || | || |||||||| ||||| | ||| ||||||| || | || ||||
Sbjct 2454 CAGTGAGATCTTCTTCATCATCCTCTTGACCATAGACCGGTATCTGGCCATCGTCCACGC 2395
Query 8910 GGTGGCTTACAGGCTGGTCCGCGTGGTACCAATAGGCATCCTCGCCAGCCTCCTGGCCTG 8969
||| | | | | ||| || | | || ||| || | ||| || | ||||
Sbjct 2394 CGTGTTTGCCCTTCGAGCCCGTACAGTCACTTTTGGAATCGTCACTAGCATCTTCACCTG 2335
Query 8970 GATTCTGGCTGTGTTGGGAACCATGCCAGAGTTTATCTTTTATGAATCCAATAATGCCAC 9029
| ||||| ||| | | | || | || |||||| ||||| |||| ||| | | | |
Sbjct 2334 GGGCCTGGCAGTGCTAGCAGCCCTCCCTGAGTTTTTCTTTCATGAGTCCCAAGAGGAGGC 2275
Query 9030 AGGCAAGGGGGTCTGCCAAGCCTC-CTACACAGACTTT------------TGGAAGGGGG 9076
|| || |||| || |||| ||| |||| | |||||| |
Sbjct 2274 TGGACAGACTATCTG-CAGTCCTCTTTACCCAGAGGATAATGAAAATGCCTGGAAGCGTT 2216
Query 9077 TTGATGTTACCAGCATGA----CCATGGTCACCCTCATCCTGCCTTTGCTTATCATGGCC 9132
| ||| | || |||| || |||| || |||||| |||| || |||| |
Sbjct 2215 TCCATGCTCTGAGAATGAATATCCTGGGTCTTGCT----CTGCCTCTGCTCATTATGGTC 2160
Query 9133 TTCTGCTACTGGAAAATCATCAAGGTCCTCCTCA-AGGCCCACAACAGGTCGAGAAACCT 9191
||||||| | ||| || || || || | | |||| || || | ||| |
Sbjct 2159 ATCTGCTATTCAGGAATTATTAAAACACTGCTGAGATGCCC-CA----GTAAAAAAAAAT 2105
Query 9192 GC-ACGCCGTCAAGCTCATTTTGATCATGGTGGTGCTTTATTTTGTCTTTTGGATCCCCT 9250
| | ||| || ||||||||| |||| ||||| | | ||| | || |||| ||||
Sbjct 2104 ACAAAGCCATCCGGCTCATTTTTGTCATTATGGTGGTCTTCTTTATTTTCTGGACACCCT 2045
Query 9251 ACAA------CGTCCTGCTC---ATTTTACACACCTACCAAGAGGCCATTTTTGGGCCAG 9301
|||| |||||| ||| ||| || | ||| |||||| |
Sbjct 2044 ACAATCTAGTCGTCCTACTCTCTGCTTTTCAAATGCACCTGGAGGCC------------G 1997
Query 9302 ACTGTGA--AGCGCGGCGCAGGGTGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTG 9359
||||||| || || | ||| | ||||| ||||| | ||||| | ||| |||||||||
Sbjct 1996 ACTGTGAGCAGAGCAG-GCA-GCTGGACCTGGCCATGCTGGTGACAGAGGTGATCGCCTA 1939
Query 9360 CACCCACTGCTGCGTCAACCCCGTCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412
||| |||||||| |||||||| || |||||||| || || ||||| | |||||
Sbjct 1938 CACGCACTGCTGTGTCAACCCTGTGATCTACGCCTTCGTCGGCGAGAGGTTCC 1886
>seq14698
Length=29873
Score = 132 bits (146), Expect = 5e-26
Identities = 128/167 (77%), Gaps = 12/167 (7%)
Strand=Plus/Minus
Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290
|||||||| |||||||||| |||||||| || ||||| ||||||||| ||||||||||||
Sbjct 14200 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAAATGATCCAGTTTTACCTGGAGGAGGTGA 14141
Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350
|||| ||||| ||||| || || || || || |||||||| || ||||
Sbjct 14140 TGCCACAGGCTGAGAACCA------------TGGGCCTGAGATCAAGGAGCACGTGAACT 14093
Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397
| |||||||| ||||| |||||||| | || | ||| |||| |||
Sbjct 14092 CACTGGGGGAGAAGCTGAAGACCCTCCGGCTGCGACTGAGGCGCTGT 14046
Score = 105 bits (116), Expect = 8e-18
Identities = 122/167 (73%), Gaps = 12/167 (7%)
Strand=Plus/Plus
Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290
|||||| | | ||||||| |||||||| || |||| || |||||| ||||||||||||
Sbjct 18862 AGGGTTTCCAGAGTTGCCAAGCCTTGTCGGAAGTGATCCACTTTTACCTGGAGGAGGTGA 18921
Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350
|||| ||||| ||||| | || || || || |||||||| || ||||
Sbjct 18922 TGCCACAGGCTGAGAACTA------------TGGGCCTGAGATCAAGGAGCACGTGAACT 18969
Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397
| |||||||| ||||| |||||||| | || | ||| |||| |||
Sbjct 18970 CGCTGGGGGAGAAGCTGAAGACCCTCCGGCTGCGACTGAGGCGCTGT 19016
Score = 95.1 bits (104), Expect = 1e-14
Identities = 73/87 (84%), Gaps = 0/87 (0%)
Strand=Plus/Minus
Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521
|||| ||||| | |||||| |||||||| |||||||||||||| || || || |||||||
Sbjct 11881 AGCTCCAAGAGAGGGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 11822
Query 178522 TAGAAGCTTACATGACAACAAAAATGA 178548
||||| | |||||||||| || ||||
Sbjct 11821 TAGAAACCTACATGACAATGAAGATGA 11795
>seq1495313
Length=124
Score = 113 bits (124), Expect = 5e-20
Identities = 98/122 (80%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 146923 GGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGC 146982
||||| | ||| || ||||| ||||| || || ||||| ||||| |||||||| || |||
Sbjct 122 GGCTCGATGTGATTCAGGTAAACGTGTGCATCTCCCAGAGTGTGTACAAAGTCACCTGGC 63
Query 146983 TTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAG 147042
|| ||| | || | ||| || | ||||||||||||||| | |||||||| |||||||||
Sbjct 62 TTCAGGTCCGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAG 3
Query 147043 GG 147044
||
Sbjct 2 GG 1
>seq94308
Length=11447
Score = 100 bits (110), Expect = 3e-16
Identities = 96/123 (78%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669
|||||| ||||||| | |||| || || ||||| ||| ||| |||| ||||||||
Sbjct 11107 GTACTCGGCGGTGTTTGTCATTGGCCTGATCGGCAACATCCTAGTGGTCCTGGTCCTCAT 11048
Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729
|||||||||| ||||| | |||||||| ||||| ||| ||||||||||| || |||
Sbjct 11047 GCAGTACAAGAGACTCAGAAGCATGACCAGCATCTACCTCCTCAACCTGGCCATTTCTGA 10988
Query 8730 CCT 8732
|||
Sbjct 10987 CCT 10985
Score = 82.4 bits (90), Expect = 9e-11
Identities = 72/90 (80%), Gaps = 0/90 (0%)
Strand=Plus/Minus
Query 9323 TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCGTCAACCCCG 9382
||||| ||||| | |||| | ||| ||||||||| ||| ||||||||||||||||| |
Sbjct 10350 TGGACCTGGCCATTCAGGTGACGGAGGTGATCGCCTACACTCACTGCTGCGTCAACCCTG 10291
Query 9383 TCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412
| ||||| | ||||| ||||| | |||||
Sbjct 10290 TAATCTATGTCTTTGTTGGCGAGAGGTTCC 10261
>seq1430582
Length=123
Score = 96.9 bits (106), Expect = 4e-15
Identities = 95/123 (77%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 147374 ACCCGTGGGCGTCCCAGATGCCCACTCCCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGC 147433
|||||| ||| ||||| || ||||||||||| || || ||||||| || ||||| |
Sbjct 1 ACCCGTTGGCATCCCAAATTTTCACTCCCTTGGAAGACAGTTCCTTAGCGTTGGTGGATC 60
Query 147434 CCCGGATGAACCAGAGCAGCTCCTCCAAAACCCCCCTCCAAAAGACCCTCTTGGTGGTCA 147493
|| ||| ||||| |||| |||||||||||| || |||| || || | ||||| ||||
Sbjct 61 CCTTGATAAACCACAGCAACTCCTCCAAAACACCTTTCCAGAACACACGTTTGGTTGTCA 120
Query 147494 GCA 147496
|||
Sbjct 121 GCA 123
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 560961636170400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |