Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq155098 113 4e-20
seq185925 95.1 1e-14
seq66256 93.3 4e-14
>seq155098
Length=7669
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||| | | |||||||| | ||| | || ||||||||||||| |||| || | |
Sbjct 7211 CCACCAAGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGCTGTAGTCAGAC 7270
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
|| || || || || ||||| ||||| || ||||| |||| |||||||| | ||||
Sbjct 7271 AAAGTACGTTCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTATTTGCTGGTCAGGAGGA 7330
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| | ||||| ||| |||||| ||| | | || | | || || | ||| |||
Sbjct 7331 ATTCCTTCCTTATCCTGGATCTTGGTCTTTACATTTTCTATTGTATCCGAGGGTTCGACC 7390
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|| | ||||| || || ||||||| || |||||||| ||||||||
Sbjct 7391 TCGAGAGTGATGGTCTTCCCCGTCAGGGTCTTCACAAAAATCTGCAT 7437
>seq185925
Length=7279
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569
|||||| | | |||||||| | ||| | || |||||||||||||||||| || | |
Sbjct 290 CCACCATGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 349
Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629
|| || | | || ||||| ||||| || ||| | ||| | |||||||| | ||||
Sbjct 350 AAAGTATGTCCATCTTCCAGTTGCTTGCCAGCACAGATCTGTCTTTGCTGGTCAGGAGGA 409
Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689
| | ||||| ||| |||||| ||| | | || | | || || | ||| |||
Sbjct 410 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCGACC 469
Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736
|| | ||||| || || ||||||| || |||| || ||||||||
Sbjct 470 TCAAGAGTGATGGTCTTCCCCGTCAGGGTCTTCATGAAAATCTGCAT 516
>seq66256
Length=6617
Score = 93.3 bits (102), Expect = 4e-14
Identities = 138/196 (70%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
||| || || ||||||||||| | | || || | || ||||||||||| | |||||
Sbjct 1608 CTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCTGGCAAA 1549
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|| | || ||||||||| | |||| || ||||| ||| |||||| ||||| |
Sbjct 1548 GATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTT 1489
Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724
| | ||||| || | || ||||||| ||||| || || || |||| || |||||
Sbjct 1488 CTCGATGGTGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 1429
Query 35725 AAATATCTGCATTCTG 35740
|| || |||||| ||
Sbjct 1428 GAAGATTTGCATTTTG 1413
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433828254954054
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |