Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_026586.1 Length=66299 Score E Sequences producing significant alignments: (Bits) Value seq3087670 82.4 3e-11 >seq3087670 Length=5654 Score = 82.4 bits (90), Expect = 3e-11 Identities = 113/156 (72%), Gaps = 4/156 (3%) Strand=Plus/Plus Query 42822 GGGGACGGCTGGAAGTATCGCGGTCGCGGCCTGATCCAGCTGACCGGGAAGTCGAACTAT 42881 |||||||| ||||| ||||| ||||||||||||||| | |||||| | |||||| Sbjct 214 GGGGACGGGCCCAAGTACCGCGGGCGCGGCCTGATCCAGGTCACCGGGCGAGCCAACTAT 273 Query 42882 GCCCTGTTCGCCGAAGACTCCGGTATGGACGTTCTGGAGAAGCCGGAGCTGCTGGAAACT 42941 ||| || || ||||| | || ||||| | | | ||||| ||||||||||| | Sbjct 274 GCCGCGTGCGGCGAAGCCCTGGGCCTGGACCTGATCAACAAGCCTGAGCTGCTGGAGATG 333 Query 42942 CCGGCCGGCGCGTCG--ATGTCTTCGGCCTGGTTCT 42975 ||| | || || || ||||| |||| ||||||| Sbjct 334 CCG--CAGCACGCCGCCATGTCAGCGGCTTGGTTCT 367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 204050855184460