Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_026594.1 Length=56537 Score E Sequences producing significant alignments: (Bits) Value seq197464 127 7e-25 seq3085555 113 2e-20 seq2862014 87.8 6e-13 seq3016724 82.4 3e-11 >seq197464 Length=1688 Score = 127 bits (140), Expect = 7e-25 Identities = 230/330 (70%), Gaps = 16/330 (5%) Strand=Plus/Plus Query 36713 TCGGCCCTGCGGGCACCGGGAAGACCTTCCTGGCCATTCACCA--CGGACTGCGCCTGCT 36770 ||||||| || || ||||| ||||||| ||||||| | | ||| | |||| || Sbjct 242 TCGGCCCCGCCGGTACCGGCAAGACCTACCTGGCCGTGGCCTGTGCGGTCGACGCC--CT 299 Query 36771 GGAGGCCAAGGAAATCCAGCGACTCGTCATCACTCGCCCCGCCGTCGAGGCCGAGGAGAA 36830 ||| | || || | | ||| || | | ||||| || |||||||| | ||||| Sbjct 300 TGAGCGCGAGCAAGTGCGGCGCATCCTGCTGGTGCGCCCGGCGGTCGAGGCTGGCGAGAA 359 Query 36831 GCTCGGCTACCTGCCCGGCGGCATCGAAGAGAAGATGGCTCCGTACCTGATCCCGATGCT 36890 ||| |||| ||||||||||| | | | ||||||| | ||||||||| |||| | Sbjct 360 GCTTGGCTTCCTGCCCGGCGACCTGGCCCAGAAGATCGACCCGTACCTGCGCCCGCTCTA 419 Query 36891 GGACGCGGTGATCGACCTGGTTGGCCC-GACGA--TGGCCAAGCGCCTGCAGGAGACCCG 36947 |||||| || ||| || ||||| || | ||||||||| || || || Sbjct 420 CGACGCGCTGTACGAGATGCTTGGCTTTGAATACGTGGCCAAGC---TGATTGAA---CG 473 Query 36948 CCAGCT---CGAGATCGCCCCGCTGGCCTACATGCGAGGCCGAACCTTCAACGACACGTT 37004 ||| | ||||||||||||||||||||||||||| ||||| ||||| | | ||| || Sbjct 474 TCAGGTGATCGAGATCGCCCCGCTGGCCTACATGCGCGGCCGCACCTTGAGCAACAGTTT 533 Query 37005 CCTCATCGCCGACGAGATGCAGAACGCCAC 37034 | ||||| |||||| | |||||| |||| Sbjct 534 CATCATCCTCGACGAAAGCCAGAACACCAC 563 >seq3085555 Length=3407 Score = 113 bits (124), Expect = 2e-20 Identities = 182/261 (70%), Gaps = 17/261 (7%) Strand=Plus/Minus Query 26291 CTCCCCATGACGCGGGGCTACGTCCGCCACTGGGGCGTGAAGGAGGCCGCTCGTGAGCTG 26350 || ||| || | || | |||||||||||||||||| |||| |||||| || |||||| Sbjct 2642 CTTCCCCTGTCCCGCGATTACGTCCGCCACTGGGGCCTGAAAGAGGCCATCCGGGAGCTG 2583 Query 26351 CTGCAGAACGCCATCGACT-----TCGCCGGAGGACAGCTCCAGGTGGAGCTTGGTGACG 26405 | ||||||||| | || ||||| || | || | | ||||| Sbjct 2582 GTACAGAACGCCCTGGATAGTGAGTCGCCTTTCGAATACGCCT--------TCGCTGACG 2531 Query 26406 GTCAGCTGCGCGTCACCAGCCCCGGCGCAACCCTCCCGGCCCGCACCCTGCTCCTGGGCA 26465 | |||||| | ||||||||| | |||| || |||| |||||||| | ||||||| Sbjct 2530 GCCAGCTGTTCATCACCAGCCGCTTTGCAAGGCTGGAGGCCAGCACCCTGGTGCTGGGCA 2471 Query 26466 GCTCGACCAAGACGGACGACGCCCGGACG--ATCGGCTCCTTCGGCGAAGGCTACAAGCT 26523 || || ||||| | ||| ||| | || | |||||| ||||||||| || ||||| | Sbjct 2470 GCACGTCCAAGTCTGAC--CGCACTGATGCCATCGGCAGCTTCGGCGAGGGGTACAAAAT 2413 Query 26524 GGCGCTGCTGGTGCTGACGCG 26544 || |||||||||||||| || Sbjct 2412 CGCCCTGCTGGTGCTGACCCG 2392 >seq2862014 Length=281 Score = 87.8 bits (96), Expect = 6e-13 Identities = 133/185 (72%), Gaps = 12/185 (6%) Strand=Plus/Plus Query 36805 CGCCCCGCCGTCGAGGCCGAGGAGAAGCTCGGCTACCTGCCCGGCGGCATCGAAGAGAAG 36864 ||||| || |||||||||| || ||||| |||| ||||||||||| | | | ||||| Sbjct 103 CGCCCGGCGGTCGAGGCCGGCGAAAAGCTTGGCTTCCTGCCCGGCGACCTGGCCCAGAAG 162 Query 36865 ATGGCTCCGTACCTGATCCCGATGCTGGACGCGGTGATCGACCTGGTTGGC-CCGACGA- 36922 || | ||||||||| |||| | |||||| || ||| || | ||| || | Sbjct 163 ATCGACCCGTACCTGCGCCCGCTCTATGACGCGCTGTACGAGATGCTCGGCTTTGAATAC 222 Query 36923 -TGGCCAAGCGCCTGCAGGAGACCCGCCA---GCTCGAGATCGCCCCGCTGGCCTACATG 36978 ||||||| ||| ||| ||||| | |||||||||||||||||||||||||| Sbjct 223 GTGGCCAA---ACTGATCGAG---CGCCAGGTGATCGAGATCGCCCCGCTGGCCTACATG 276 Query 36979 CGAGG 36983 || || Sbjct 277 CGTGG 281 >seq3016724 Length=778 Score = 82.4 bits (90), Expect = 3e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 36953 TCGAGATCGCCCCGCTGGCCTACATGCGAGGCCGAACCTTCAACGACACGTTCCTCATCG 37012 ||||||||||||||||||| |||||||| || || ||||| ||| ||| ||| ||||| Sbjct 696 TCGAGATCGCCCCGCTGGCTTACATGCGTGGTCGCACCTTGAACAACAGTTTCATCATCC 637 Query 37013 CCGACGAGATGCAGAACGCCACC 37035 |||||| | |||||| ||||| Sbjct 636 TCGACGAAAGCCAGAACACCACC 614 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 174165884246418