Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_026594.1
Length=56537
Score E
Sequences producing significant alignments: (Bits) Value
seq197464 127 7e-25
seq3085555 113 2e-20
seq2862014 87.8 6e-13
seq3016724 82.4 3e-11
>seq197464
Length=1688
Score = 127 bits (140), Expect = 7e-25
Identities = 230/330 (70%), Gaps = 16/330 (5%)
Strand=Plus/Plus
Query 36713 TCGGCCCTGCGGGCACCGGGAAGACCTTCCTGGCCATTCACCA--CGGACTGCGCCTGCT 36770
||||||| || || ||||| ||||||| ||||||| | | ||| | |||| ||
Sbjct 242 TCGGCCCCGCCGGTACCGGCAAGACCTACCTGGCCGTGGCCTGTGCGGTCGACGCC--CT 299
Query 36771 GGAGGCCAAGGAAATCCAGCGACTCGTCATCACTCGCCCCGCCGTCGAGGCCGAGGAGAA 36830
||| | || || | | ||| || | | ||||| || |||||||| | |||||
Sbjct 300 TGAGCGCGAGCAAGTGCGGCGCATCCTGCTGGTGCGCCCGGCGGTCGAGGCTGGCGAGAA 359
Query 36831 GCTCGGCTACCTGCCCGGCGGCATCGAAGAGAAGATGGCTCCGTACCTGATCCCGATGCT 36890
||| |||| ||||||||||| | | | ||||||| | ||||||||| |||| |
Sbjct 360 GCTTGGCTTCCTGCCCGGCGACCTGGCCCAGAAGATCGACCCGTACCTGCGCCCGCTCTA 419
Query 36891 GGACGCGGTGATCGACCTGGTTGGCCC-GACGA--TGGCCAAGCGCCTGCAGGAGACCCG 36947
|||||| || ||| || ||||| || | ||||||||| || || ||
Sbjct 420 CGACGCGCTGTACGAGATGCTTGGCTTTGAATACGTGGCCAAGC---TGATTGAA---CG 473
Query 36948 CCAGCT---CGAGATCGCCCCGCTGGCCTACATGCGAGGCCGAACCTTCAACGACACGTT 37004
||| | ||||||||||||||||||||||||||| ||||| ||||| | | ||| ||
Sbjct 474 TCAGGTGATCGAGATCGCCCCGCTGGCCTACATGCGCGGCCGCACCTTGAGCAACAGTTT 533
Query 37005 CCTCATCGCCGACGAGATGCAGAACGCCAC 37034
| ||||| |||||| | |||||| ||||
Sbjct 534 CATCATCCTCGACGAAAGCCAGAACACCAC 563
>seq3085555
Length=3407
Score = 113 bits (124), Expect = 2e-20
Identities = 182/261 (70%), Gaps = 17/261 (7%)
Strand=Plus/Minus
Query 26291 CTCCCCATGACGCGGGGCTACGTCCGCCACTGGGGCGTGAAGGAGGCCGCTCGTGAGCTG 26350
|| ||| || | || | |||||||||||||||||| |||| |||||| || ||||||
Sbjct 2642 CTTCCCCTGTCCCGCGATTACGTCCGCCACTGGGGCCTGAAAGAGGCCATCCGGGAGCTG 2583
Query 26351 CTGCAGAACGCCATCGACT-----TCGCCGGAGGACAGCTCCAGGTGGAGCTTGGTGACG 26405
| ||||||||| | || ||||| || | || | | |||||
Sbjct 2582 GTACAGAACGCCCTGGATAGTGAGTCGCCTTTCGAATACGCCT--------TCGCTGACG 2531
Query 26406 GTCAGCTGCGCGTCACCAGCCCCGGCGCAACCCTCCCGGCCCGCACCCTGCTCCTGGGCA 26465
| |||||| | ||||||||| | |||| || |||| |||||||| | |||||||
Sbjct 2530 GCCAGCTGTTCATCACCAGCCGCTTTGCAAGGCTGGAGGCCAGCACCCTGGTGCTGGGCA 2471
Query 26466 GCTCGACCAAGACGGACGACGCCCGGACG--ATCGGCTCCTTCGGCGAAGGCTACAAGCT 26523
|| || ||||| | ||| ||| | || | |||||| ||||||||| || ||||| |
Sbjct 2470 GCACGTCCAAGTCTGAC--CGCACTGATGCCATCGGCAGCTTCGGCGAGGGGTACAAAAT 2413
Query 26524 GGCGCTGCTGGTGCTGACGCG 26544
|| |||||||||||||| ||
Sbjct 2412 CGCCCTGCTGGTGCTGACCCG 2392
>seq2862014
Length=281
Score = 87.8 bits (96), Expect = 6e-13
Identities = 133/185 (72%), Gaps = 12/185 (6%)
Strand=Plus/Plus
Query 36805 CGCCCCGCCGTCGAGGCCGAGGAGAAGCTCGGCTACCTGCCCGGCGGCATCGAAGAGAAG 36864
||||| || |||||||||| || ||||| |||| ||||||||||| | | | |||||
Sbjct 103 CGCCCGGCGGTCGAGGCCGGCGAAAAGCTTGGCTTCCTGCCCGGCGACCTGGCCCAGAAG 162
Query 36865 ATGGCTCCGTACCTGATCCCGATGCTGGACGCGGTGATCGACCTGGTTGGC-CCGACGA- 36922
|| | ||||||||| |||| | |||||| || ||| || | ||| || |
Sbjct 163 ATCGACCCGTACCTGCGCCCGCTCTATGACGCGCTGTACGAGATGCTCGGCTTTGAATAC 222
Query 36923 -TGGCCAAGCGCCTGCAGGAGACCCGCCA---GCTCGAGATCGCCCCGCTGGCCTACATG 36978
||||||| ||| ||| ||||| | ||||||||||||||||||||||||||
Sbjct 223 GTGGCCAA---ACTGATCGAG---CGCCAGGTGATCGAGATCGCCCCGCTGGCCTACATG 276
Query 36979 CGAGG 36983
|| ||
Sbjct 277 CGTGG 281
>seq3016724
Length=778
Score = 82.4 bits (90), Expect = 3e-11
Identities = 68/83 (82%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 36953 TCGAGATCGCCCCGCTGGCCTACATGCGAGGCCGAACCTTCAACGACACGTTCCTCATCG 37012
||||||||||||||||||| |||||||| || || ||||| ||| ||| ||| |||||
Sbjct 696 TCGAGATCGCCCCGCTGGCTTACATGCGTGGTCGCACCTTGAACAACAGTTTCATCATCC 637
Query 37013 CCGACGAGATGCAGAACGCCACC 37035
|||||| | |||||| |||||
Sbjct 636 TCGACGAAAGCCAGAACACCACC 614
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 174165884246418
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |