Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_026601.1 Length=37238 Score E Sequences producing significant alignments: (Bits) Value seq3088379 114 3e-21 >seq3088379 Length=10556 Score = 114 bits (126), Expect = 3e-21 Identities = 236/348 (68%), Gaps = 10/348 (3%) Strand=Plus/Plus Query 25169 GTGCAGGCCCGGCTGCTGGAGACGGCCAGCCGCACCTATCGGCCGCTGGCGGAAGCCCAA 25228 || || | ||| || || || || || | || ||||| || || || || ||||| ||| Sbjct 9658 GTTCAAGACCGCCTCCTTGACACAGCGAAGCGTACCTACCGCCCACTCGCTGAAGCACAA 9717 Query 25229 GAGTTGTACATCCGCACCGCCGACAGCCTGAAGTCGTTGCGGTACACCACCGAACAAGCG 25288 || ||||||||||||| | || ||||| || ||| || | |||| |||| || ||| Sbjct 9718 GAACTGTACATCCGCACATCGGATAGCCTTAAATCGATGGGCTACAACACCAGCCAGGCG 9777 Query 25289 CTGGACATCACCGATTCGTTTTC--CTTCTTGCTGGTAACCAACGCCGCGTCGGCGGACC 25346 ||||| | | || | |||| ||| | |||| |||||| |||| || || || Sbjct 9778 CTGGATGTGATGGA--CAGTTTCAGCTTTCTTTTGGTGACCAACTCCGCATCAGCAGA-- 9833 Query 25347 GTGCGGCGAG---CGCCATCGACGCCTACTCGAAATCGATCCAGACCGGCAAGGTCAGCT 25403 ||| || || ||||| |||||||||||| | |||| || |||||||| Sbjct 9834 -AAAGGCCAGTTCGGCAATCGATGCCTACTCGAAAGCACTCCAAACTGGCAAGGTTGAGG 9892 Query 25404 CTGACGCCTGGCAGTCGATCATGGCCGCCATGCCCAGCCTGGTGAACGCCCTGGCAGAGT 25463 |||| | |||||| | ||| | || |||||||| | | || || || | || | | Sbjct 9893 CTGATGGATGGCAGGCCATCCTTGCGGCCATGCCTACTGTTGTCGACACCATTGCCAAAT 9952 Query 25464 CCACCGGCAAGAGCACCGAGGAAATCCGCAAGCTAGGCATCGAGGGCA 25511 ||||||| |||| | || || ||||||| || || | |||||| Sbjct 9953 CCACCGGGAAGACTGCTGAAGAGATCCGCAGCCTTGGAGCCCAGGGCA 10000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114674080850400