Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq300236 123 2e-23 seq155098 93.3 4e-14 seq185925 89.7 5e-13 >seq300236 Length=7644 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||||||| || | || ||||| || ||||| || || || ||||||||||| | Sbjct 7640 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAA 7581 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || |||||||| || ||||| ||||| | |||||| || || || Sbjct 7580 AGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGAGGG 7521 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| ||||||||||| || || ||||| || | ||||| | ||||| Sbjct 7520 ATGCCCTCTTTTTCTTGTATCTTCCCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 7461 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || ||||| ||||||||||| || | || || || || || |||||| Sbjct 7460 TCCAGAGTGATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCATT 7413 >seq155098 Length=7669 Score = 93.3 bits (102), Expect = 4e-14 Identities = 156/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 |||| |||||| || || || ||||| |||||||||||| ||||||| | ||| || | Sbjct 7220 AGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGCTGTAGTCAGACAA-AGTACG 7278 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || || || || ||||| ||||| |||| ||||| || || || || ||||| Sbjct 7279 TTCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTATTTGCTGGTCAGGAGGAATTCCTTC 7338 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || || || || || || || | ||| || || | ||| || |||||||| Sbjct 7339 CTTATCCTGGATCTTGGTCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGT 7398 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||||| || || || | || || || ||||| ||||| ||| Sbjct 7399 GATGGTCTTCCCCGTCAGGGTCTTCACAAAAATCTGCATCTTG 7441 >seq185925 Length=7279 Score = 89.7 bits (98), Expect = 5e-13 Identities = 155/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 |||| |||||| || || || ||||| |||||||||||||||||||| | ||| || || Sbjct 299 AGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAA-AGTATG 357 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || || || || ||||| ||| | ||| | ||||| || || || || ||||| Sbjct 358 TCCATCTTCCAGTTGCTTGCCAGCACAGATCTGTCTTTGCTGGTCAGGAGGAATTCCTTC 417 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || || || || || || || | ||| || | | ||| || || ||||| Sbjct 418 CTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCGACCTCAAGAGT 477 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||||| || || || | || || | |||||| ||||| ||| Sbjct 478 GATGGTCTTCCCCGTCAGGGTCTTCATGAAAATCTGCATCTTG 520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 485886793527720