Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq300236 123 2e-23
seq155098 93.3 4e-14
seq185925 89.7 5e-13
>seq300236
Length=7644
Score = 123 bits (136), Expect = 2e-23
Identities = 164/228 (72%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| |||||||| || | || ||||| || ||||| || || || ||||||||||| |
Sbjct 7640 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAA 7581
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| |||| | || || |||||||| || ||||| ||||| | |||||| || || ||
Sbjct 7580 AGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGAGGG 7521
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
||||| ||||||||||| || || ||||| || | ||||| | |||||
Sbjct 7520 ATGCCCTCTTTTTCTTGTATCTTCCCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 7461
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714
|| ||||| ||||||||||| || | || || || || || ||||||
Sbjct 7460 TCCAGAGTGATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCATT 7413
>seq155098
Length=7669
Score = 93.3 bits (102), Expect = 4e-14
Identities = 156/223 (70%), Gaps = 2/223 (1%)
Strand=Plus/Plus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554
|||| |||||| || || || ||||| |||||||||||| ||||||| | ||| || |
Sbjct 7220 AGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGCTGTAGTCAGACAA-AGTACG 7278
Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614
|| || || || ||||| ||||| |||| ||||| || || || || |||||
Sbjct 7279 TTCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTATTTGCTGGTCAGGAGGAATTCCTTC 7338
Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674
|| || || || || || || || | ||| || || | ||| || ||||||||
Sbjct 7339 CTTATCCTGGATCTTGGTCTTTACATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGT 7398
Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717
||||| || || || | || || || ||||| ||||| |||
Sbjct 7399 GATGGTCTTCCCCGTCAGGGTCTTCACAAAAATCTGCATCTTG 7441
>seq185925
Length=7279
Score = 89.7 bits (98), Expect = 5e-13
Identities = 155/223 (70%), Gaps = 2/223 (1%)
Strand=Plus/Plus
Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554
|||| |||||| || || || ||||| |||||||||||||||||||| | ||| || ||
Sbjct 299 AGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAA-AGTATG 357
Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614
|| || || || ||||| ||| | ||| | ||||| || || || || |||||
Sbjct 358 TCCATCTTCCAGTTGCTTGCCAGCACAGATCTGTCTTTGCTGGTCAGGAGGAATTCCTTC 417
Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674
|| || || || || || || || | ||| || | | ||| || || |||||
Sbjct 418 CTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGTTCGACCTCAAGAGT 477
Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717
||||| || || || | || || | |||||| ||||| |||
Sbjct 478 GATGGTCTTCCCCGTCAGGGTCTTCATGAAAATCTGCATCTTG 520
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 485886793527720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |