Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq324775 113 6e-20 >seq324775 Length=12802 Score = 113 bits (124), Expect = 6e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 213996 AGATTATTGACGGGGAAGTCTACCCTCCTACCGTCAAGGAGGCCCGAGTGCATATGGTTT 214055 |||| ||| | || || | || ||||| || ||||| || | | || | ||| | | Sbjct 7139 AGATGATTAATGGAGAGATGTATCCTCCCACAGTCAAAGATACTCAGGTCGAAATGATCT 7198 Query 214056 ACGAACCCAGCGTTCCCGAAAAGTT-ACGTTTCGCACTGGGTAACGAGATGTTTGGACTC 214114 || ||| ||||| ||| | || | |||| || |||| | ||| | ||||| || Sbjct 7199 ACCCACCTCATGTTCCTGAACACTTGAAGTTT-GCTGTGGGCCAGGAGGTCTTTGGTCTG 7257 Query 214115 GTGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGAGAGAGCACAACAGGGTTTGCGAC 214174 ||||| ||| | ||| |||| |||| || |||||| | || |||||||| || || || Sbjct 7258 GTGCCTGGTCTGATGATGTATGCCACCATTTGGCTGCGGGAACACAACAGAGTGTGTGAT 7317 Query 214175 GTGCTGAAACAAGAGCACCCGGAATGGAACGACGAACAGCTGTTCCAGA 214223 ||||| ||||||||||| || |||||| ||| || ||| ||||||||| Sbjct 7318 GTGCTTAAACAAGAGCATCCAGAATGGGGCGATGAGCAGTTGTTCCAGA 7366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 695415224780640