Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq28392 187 3e-42 seq141641 120 4e-22 seq58757 118 1e-21 seq85459 111 2e-19 seq142543 104 3e-17 seq273157 102 1e-16 seq2306809 100 4e-16 seq194669 84.2 3e-11 >seq28392 Length=738 Score = 187 bits (206), Expect = 3e-42 Identities = 279/396 (70%), Gaps = 0/396 (0%) Strand=Plus/Plus Query 39353 aaaaaaTTAGTTTTGCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCA 39412 || || ||||| || || |||| ||| ||||||||||| || ||||| ||||| | | Sbjct 1 AAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTCCATAAAGTCAAATGGATTTTCTACT 60 Query 39413 TTATAtttttttttAAATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTAT 39472 | | || |||| || | || || | ||||||||| || || || ||||| Sbjct 61 CTGCAAACCTTGCTAAAGCCCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGTAC 120 Query 39473 GTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAAC 39532 ||||||| || ||||| || ||||| || || || || |||||||| || ||| Sbjct 121 TGCTTCATCAAAGTGCACTTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTGAGGAAC 180 Query 39533 TCTTTTTCGATGTCTACGGCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGA 39592 || | ||| || || || | ||||| | ||||| || || ||| Sbjct 181 TCCTGTTCTATCCTAACTGCATTGACGATTATTTCTTTTACTCTCTGTTCCGAAGGTTTG 240 Query 39593 TGCAATAAATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTA 39652 ||||| | ||||| ||||| | |||||| |||||||| || | ||||||||||| ||| Sbjct 241 TGCAACAGGTGTTTGAACATAAGGCAGGCAAAGTCACAGTGCAAACCCTCATCTCTGCTA 300 Query 39653 ATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATG 39712 || | ||| | ||||| ||||| |||||||| || || || || |||||||| ||||| Sbjct 301 ATAAGTTCACTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATC 360 Query 39713 GCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACT 39748 | |||||||| || ||||||||||||||||| ||| Sbjct 361 GACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACT 396 >seq141641 Length=332 Score = 120 bits (132), Expect = 4e-22 Identities = 146/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 39999 CCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAA 40058 ||||||||||||| ||||| |||||||| || ||||| || |||| ||||| ||||| Sbjct 332 CCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGCACATGGGAAATAA 273 Query 40059 AATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTT 40118 ||| | | || || || ||| | ||||| | || || || || | || || | Sbjct 272 AATCTCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCTTGGAAAGGTCCACCT 213 Query 40119 CTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATT 40178 | |||||||||||||| || ||||| || || || ||||| | ||| |||||| | |||| Sbjct 212 CCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCAAATATCATGGTATT 153 Query 40179 GTATTGGAAAAATAACAAA 40197 || ||||| || ||||| Sbjct 152 TAATAGGAAAGATGACAAA 134 >seq58757 Length=22028 Score = 118 bits (130), Expect = 1e-21 Identities = 106/133 (80%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| || || || ||||| ||||| || || ||||||||||| ||||| | || Sbjct 18138 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTATAAGGTTCAATTGAC 18197 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 ||||||||||||| || ||||||||||| ||||| ||||| || || | | |||||| Sbjct 18198 TCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 18257 Query 68839 TTTCTAAGACCAT 68851 ||||| | ||||| Sbjct 18258 TTTCTTATACCAT 18270 >seq85459 Length=10496 Score = 111 bits (122), Expect = 2e-19 Identities = 91/111 (82%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 39652 AATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATAT 39711 ||| | ||| || ||||| ||||| ||||||||||| || || || |||||||| ||||| Sbjct 8943 AATAAGTTCATTGGAAAACGTGAGACCAGGCATTAGTCCTCGTTTCTTGAGCCAGAATAT 8884 Query 39712 GGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAAC 39762 | |||||||| || ||||||||||||||||| ||||| ||||| || || Sbjct 8883 CGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGGCTAC 8833 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936 |||||||| || ||||| || | |||||||||||||| ||||| |||||||| || || Sbjct 6860 ATCTTTAATGTAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 6801 Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCT 39982 || || || || || ||||||| ||||| ||||| || || ||| Sbjct 6800 AATTTGGAAGCCATAGAAACATCGGGCTTCGGTAATCTGAACTTCT 6755 >seq142543 Length=7870 Score = 104 bits (114), Expect = 3e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 |||||||| || || | || || ||||| |||||||| ||||| || || | || || Sbjct 6769 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCGGGCATGAGTCCTCTTTTCTTT 6828 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 ||||| ||||| |||||||||||||| || ||||| || |||||||| || ||||| || Sbjct 6829 AGCCAGAATATAGCAGCAAAAGATCCGGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 6888 Query 39761 AC 39762 || Sbjct 6889 AC 6890 >seq273157 Length=43465 Score = 102 bits (112), Expect = 1e-16 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 70331 CATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTA 70390 || |||| |||| ||| || ||||| ||||| || || || | || || || ||||| | Sbjct 35136 CACCACTGAATACTTTCTTGGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCCA 35077 Query 70391 GAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTAT 70450 | || ||||||||||| || | ||||| | || || ||| | || ||||| || |||| Sbjct 35076 GGATGGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTCTCAGCAGCCAAAGTAT 35017 Query 70451 CTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 | | ||| | ||| || || || | |||| ||||| || |||||||||| Sbjct 35016 CCAGTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCATGG 34966 >seq2306809 Length=138 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 39924 TGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTG 39983 ||||||| || || || || || || || ||||| | ||||| ||||| || || ||| Sbjct 1 TGTTTTCCATGGCAATTTGGAAGCCATAGAAACAACGGGCTTCGGTAATCTGAACTTCTT 60 Query 39984 AACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCA 40043 ||||| | ||| ||||||||||||| ||||| |||||||| || ||||| || |||| Sbjct 61 GGCAAAACCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCA 120 Query 40044 ATACATGTTTAATAAAAT 40061 ||||| |||||||| Sbjct 121 GCACATGGGAAATAAAAT 138 >seq194669 Length=4388 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/130 (75%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 39987 AAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATA 40046 ||||||| | |||||||||||||||| ||||||||||| || |||||||| || || | Sbjct 1263 AAAATCT---CACCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 1207 Query 40047 CATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTG 40106 || ||||||||| || || || | | | | || ||||||| | | ||| |||| Sbjct 1206 TGTGAGAAATAAAATACTTCTCTTCTGATTTAAGCTTGTTCCAGTGAGGAAGATCCTTTG 1147 Query 40107 ATATATCTAC 40116 ||| ||| || Sbjct 1146 ATAAATCAAC 1137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 660389732690040