Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq28392 187 3e-42
seq141641 120 4e-22
seq58757 118 1e-21
seq85459 111 2e-19
seq142543 104 3e-17
seq273157 102 1e-16
seq2306809 100 4e-16
seq194669 84.2 3e-11
>seq28392
Length=738
Score = 187 bits (206), Expect = 3e-42
Identities = 279/396 (70%), Gaps = 0/396 (0%)
Strand=Plus/Plus
Query 39353 aaaaaaTTAGTTTTGCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCA 39412
|| || ||||| || || |||| ||| ||||||||||| || ||||| ||||| | |
Sbjct 1 AAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTCCATAAAGTCAAATGGATTTTCTACT 60
Query 39413 TTATAtttttttttAAATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTAT 39472
| | || |||| || | || || | ||||||||| || || || |||||
Sbjct 61 CTGCAAACCTTGCTAAAGCCCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGTAC 120
Query 39473 GTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAAC 39532
||||||| || ||||| || ||||| || || || || |||||||| || |||
Sbjct 121 TGCTTCATCAAAGTGCACTTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTGAGGAAC 180
Query 39533 TCTTTTTCGATGTCTACGGCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGA 39592
|| | ||| || || || | ||||| | ||||| || || |||
Sbjct 181 TCCTGTTCTATCCTAACTGCATTGACGATTATTTCTTTTACTCTCTGTTCCGAAGGTTTG 240
Query 39593 TGCAATAAATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTA 39652
||||| | ||||| ||||| | |||||| |||||||| || | ||||||||||| |||
Sbjct 241 TGCAACAGGTGTTTGAACATAAGGCAGGCAAAGTCACAGTGCAAACCCTCATCTCTGCTA 300
Query 39653 ATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATG 39712
|| | ||| | ||||| ||||| |||||||| || || || || |||||||| |||||
Sbjct 301 ATAAGTTCACTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATC 360
Query 39713 GCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACT 39748
| |||||||| || ||||||||||||||||| |||
Sbjct 361 GACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACT 396
>seq141641
Length=332
Score = 120 bits (132), Expect = 4e-22
Identities = 146/199 (73%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 39999 CCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAA 40058
||||||||||||| ||||| |||||||| || ||||| || |||| ||||| |||||
Sbjct 332 CCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGCACATGGGAAATAA 273
Query 40059 AATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTT 40118
||| | | || || || ||| | ||||| | || || || || | || || |
Sbjct 272 AATCTCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCTTGGAAAGGTCCACCT 213
Query 40119 CTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATT 40178
| |||||||||||||| || ||||| || || || ||||| | ||| |||||| | ||||
Sbjct 212 CCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCAAATATCATGGTATT 153
Query 40179 GTATTGGAAAAATAACAAA 40197
|| ||||| || |||||
Sbjct 152 TAATAGGAAAGATGACAAA 134
>seq58757
Length=22028
Score = 118 bits (130), Expect = 1e-21
Identities = 106/133 (80%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778
|||||||| || || || ||||| ||||| || || ||||||||||| ||||| | ||
Sbjct 18138 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTATAAGGTTCAATTGAC 18197
Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838
||||||||||||| || ||||||||||| ||||| ||||| || || | | ||||||
Sbjct 18198 TCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 18257
Query 68839 TTTCTAAGACCAT 68851
||||| | |||||
Sbjct 18258 TTTCTTATACCAT 18270
>seq85459
Length=10496
Score = 111 bits (122), Expect = 2e-19
Identities = 91/111 (82%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 39652 AATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATAT 39711
||| | ||| || ||||| ||||| ||||||||||| || || || |||||||| |||||
Sbjct 8943 AATAAGTTCATTGGAAAACGTGAGACCAGGCATTAGTCCTCGTTTCTTGAGCCAGAATAT 8884
Query 39712 GGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAAC 39762
| |||||||| || ||||||||||||||||| ||||| ||||| || ||
Sbjct 8883 CGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGGCTAC 8833
Score = 87.8 bits (96), Expect = 2e-12
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936
|||||||| || ||||| || | |||||||||||||| ||||| |||||||| || ||
Sbjct 6860 ATCTTTAATGTAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 6801
Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCT 39982
|| || || || || ||||||| ||||| ||||| || || |||
Sbjct 6800 AATTTGGAAGCCATAGAAACATCGGGCTTCGGTAATCTGAACTTCT 6755
>seq142543
Length=7870
Score = 104 bits (114), Expect = 3e-17
Identities = 96/122 (79%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700
|||||||| || || | || || ||||| |||||||| ||||| || || | || ||
Sbjct 6769 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCGGGCATGAGTCCTCTTTTCTTT 6828
Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760
||||| ||||| |||||||||||||| || ||||| || |||||||| || ||||| ||
Sbjct 6829 AGCCAGAATATAGCAGCAAAAGATCCGGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 6888
Query 39761 AC 39762
||
Sbjct 6889 AC 6890
>seq273157
Length=43465
Score = 102 bits (112), Expect = 1e-16
Identities = 125/171 (73%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 70331 CATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTA 70390
|| |||| |||| ||| || ||||| ||||| || || || | || || || ||||| |
Sbjct 35136 CACCACTGAATACTTTCTTGGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCCA 35077
Query 70391 GAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTAT 70450
| || ||||||||||| || | ||||| | || || ||| | || ||||| || ||||
Sbjct 35076 GGATGGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTCTCAGCAGCCAAAGTAT 35017
Query 70451 CTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501
| | ||| | ||| || || || | |||| ||||| || ||||||||||
Sbjct 35016 CCAGTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCATGG 34966
>seq2306809
Length=138
Score = 100 bits (110), Expect = 4e-16
Identities = 105/138 (76%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 39924 TGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTG 39983
||||||| || || || || || || || ||||| | ||||| ||||| || || |||
Sbjct 1 TGTTTTCCATGGCAATTTGGAAGCCATAGAAACAACGGGCTTCGGTAATCTGAACTTCTT 60
Query 39984 AACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCA 40043
||||| | ||| ||||||||||||| ||||| |||||||| || ||||| || ||||
Sbjct 61 GGCAAAACCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCA 120
Query 40044 ATACATGTTTAATAAAAT 40061
||||| ||||||||
Sbjct 121 GCACATGGGAAATAAAAT 138
>seq194669
Length=4388
Score = 84.2 bits (92), Expect = 3e-11
Identities = 97/130 (75%), Gaps = 3/130 (2%)
Strand=Plus/Minus
Query 39987 AAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATA 40046
||||||| | |||||||||||||||| ||||||||||| || |||||||| || || |
Sbjct 1263 AAAATCT---CACCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 1207
Query 40047 CATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTG 40106
|| ||||||||| || || || | | | | || ||||||| | | ||| ||||
Sbjct 1206 TGTGAGAAATAAAATACTTCTCTTCTGATTTAAGCTTGTTCCAGTGAGGAAGATCCTTTG 1147
Query 40107 ATATATCTAC 40116
||| ||| ||
Sbjct 1146 ATAAATCAAC 1137
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 660389732690040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |