Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_027298.1 Length=36814 Score E Sequences producing significant alignments: (Bits) Value seq3084660 147 5e-31 seq3087822 123 6e-24 seq3088451 91.5 3e-14 seq156999 84.2 5e-12 >seq3084660 Length=3030 Score = 147 bits (162), Expect = 5e-31 Identities = 137/170 (81%), Gaps = 3/170 (2%) Strand=Plus/Minus Query 25559 CGATGCAGGAAGCGACCGGCAAGGCTGTTTCGGATACGGTCGCCGAGTTCTCCAAGCTGG 25618 ||||||||||||||||||||||||| || || ||||| |||||||| |||||||||| Sbjct 2200 CGATGCAGGAAGCGACCGGCAAGGCCGTGAGCGAGACGGTTGCCGAGTTTTCCAAGCTGG 2141 Query 25619 CCGACGAACCGGTCAAAGCCTC-GCAGCAACTCAACGAGAAATATCACTACCTGACCGCC 25677 | ||||| |||||||| || || || || || |||||| | || ||||||||||| ||| Sbjct 2140 CTGACGATCCGGTCAAGGCGTCCGCCGCG-CTAAACGAGCAGTACCACTACCTGACTGCC 2082 Query 25678 TCGGTTTACGAGCAGATAGCCGCCCTCGATCAGCAAGGCGAT-TCGCTGG 25726 ||||||||| ||| || | || || || ||||||||||| |||||| Sbjct 2081 TCGGTTTACTCGCAAATCGTGGCTCTGGAGAAGCAAGGCGATCACGCTGG 2032 >seq3087822 Length=6084 Score = 123 bits (136), Expect = 6e-24 Identities = 126/162 (78%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 25559 CGATGCAGGAAGCGACCGGCAAGGCTGTTTCGGATACGGTCGCCGAGTTCTCCAAGCTGG 25618 |||||||||| || ||||||||||| || || |||||||| ||||||||||| |||| Sbjct 5242 CGATGCAGGAGGCCACCGGCAAGGCCGTAAGCGAAACGGTCGCTGAGTTCTCCAAACTGG 5183 Query 25619 CCGACGAACCGGTCAAAGCCTC-GCAGCAACTCAACGAGAAATATCACTACCTGACCGCC 25677 | ||||| |||||||| || || || || || || ||| |||| || |||||||| ||| Sbjct 5182 CTGACGATCCGGTCAAGGCATCCGCCGCG-CTTAATGAGCAATACCATTACCTGACTGCC 5124 Query 25678 TCGGTTTACGAGCAGATAGCCGCCCTCGATCAGCAAGGCGAT 25719 |||||||| ||| || | || || || || |||||| || Sbjct 5123 TCGGTTTATTCGCAAATTTCAGCACTGGAACAACAAGGCAAT 5082 >seq3088451 Length=13260 Score = 91.5 bits (100), Expect = 3e-14 Identities = 206/300 (69%), Gaps = 10/300 (3%) Strand=Plus/Plus Query 26410 AACGCCGAGCAGAAGCTCCAGGCGCAGCAGCGCGCCGGCCTA-TTGAGCTATGCGGACTA 26468 |||||| || || | || ||||||||||| || ||| | || ||| | ||||||| Sbjct 7376 AACGCCCAGAAGGAACTGGAGGCGCAGCAGAAGGCTGGCGTGGTTTCGCTGT-CGGACTA 7434 Query 26469 TGTCGCGCAGCGCGGCGAAC-TGATCAGCCAGAACAAGGACCAGGTCACCGCAGCCTATG 26527 | ||| || | ||| | |||||| |||| | |||||| | || || || || || Sbjct 7435 CGCAAAGCAACG-GTCGACCCTGATCAACCAGGAAAAGGACGATGTGACGGCCGCGTACC 7493 Query 26528 AAGGGGAAATCCAGGCGCTGGAGGCG--CTGCGCGACAAAAGTTCCACCACGGCGGCCCA 26585 | | || ||| | || ||||||||| | || | |||| ||| ||| |||| || Sbjct 7494 AGGCTGAGATCGATGCACTGGAGGCGGCCAAGGCCAAGAAAGG--CACAACGACGGCTCA 7551 Query 26586 GCGCATCAGCCTGGACCAGAAGATCGCCGAGGCCAGGAACAACATGGTCAAGGCGCAGAA 26645 | | ||| |||||||| ||||||||||| || || | ||||||||||| ||||| Sbjct 7552 GAGTATCCAGCTGGACCAAAAGATCGCCGATGCACGGCAGGGGATGGTCAAGGCTCAGAA 7611 Query 26646 GAAGGCCGACGCCGACCTGGAAGTC-CTCCAGCTCAACGAACAGGGCCGCCTGAAGAAAC 26704 | | || ||| | | ||| ||| | || | |||||| | ||||||||| || ||| Sbjct 7612 GGATGCTGACAGCCAGCTGACCGTCATTGCAAC-GAACGAAAAAGGCCGCCTGGAGCAAC 7670 >seq156999 Length=6365 Score = 84.2 bits (92), Expect = 5e-12 Identities = 169/247 (68%), Gaps = 3/247 (1%) Strand=Plus/Plus Query 10769 AACCTCGCGGCATCCGCAACAACAACCCCGGCAACATCGTCTGGTCGGCACGCAACAACT 10828 |||| |||||| | || ||| ||||||||||||||||| || || |||| | | Sbjct 3934 AACC-CGCGGCGTTCGTAACCGCAACCCCGGCAACATCGACTACAACTCAGCCAACCAGT 3992 Query 10829 GGCAGGGCCAACTCCCCCACGACCCGCAGATCGAGCCGCGCTTCTGTCGTTTCGACACGG 10888 |||| ||||| ||| | ||| ||| | | ||| ||| ||| || || || ||| Sbjct 3993 GGCAAGGCCAGCTCAAGCCCGATCCGTCGCTTGAGAAGCGGTTCGCCCGGTTTGATACGC 4052 Query 10889 CGCATAACGGCACCCGCGCATTGGCCAAGCTGCTGCTGAACTACC-GCAAGGTCTATGGC 10947 | | ||||| | |||||| ||| |||| ||||||||| ||||| ||| | |||| Sbjct 4053 CCGAGAACGGTATCCGCGCCCTGGGCAAGTTGCTGCTGACCTACCAGCATAAGC-ATGGG 4111 Query 10948 CTGCGCACCGTCGAATCGCTGATCGCACGCTGGGCGCCGTCGAACGAGAACAACACCCGC 11007 ||| || || | | | ||| |||||||| || ||| |||||| ||||| | Sbjct 4112 CTGAAGACGGTGAAGGCCATTATCAGCCGCTGGGCACCATCGGTAGAGAACGACACCGCC 4171 Query 11008 GCGTATG 11014 || |||| Sbjct 4172 GCCTATG 4178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113367042939632