Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_027339.1 Length=38389 Score E Sequences producing significant alignments: (Bits) Value seq3088379 563 2e-156 >seq3088379 Length=10556 Score = 563 bits (624), Expect = 2e-156 Identities = 1034/1487 (70%), Gaps = 55/1487 (4%) Strand=Plus/Plus Query 734 ATTCAGCTGTTGCCACACACCAAGGGGGAGTGGGCATTCAAGAGGATGCCCATCACACTG 793 || ||||| | || ||||||||||| ||||||||||||||| | || ||||| || Sbjct 604 ATGCAGCTTCTACCGCACACCAAGGGCGAGTGGGCATTCAAGCGTCAGCTGATCACGCTC 663 Query 794 GAACCGTGGCAGCTCTTTGTGATCTGCTGTG-CGTTTGGCTGGGTCAATAA--AGGCTCC 850 || || |||||||| |||| | || ||| | || |||||||| || || ||| | Sbjct 664 GAGCCTTGGCAGCTTTTTGGCCTA-GCCGTGACATTCGGCTGGGTAAAGAAGAAGGG--C 720 Query 851 CGGCTGCGCCGCTTCAGGGAGGTGTATACCGAAATCCCCCGTAAGAACGGCAAATCGGCA 910 ||| ||||| ||| | || || ||| | ||| | || ||||||||||||| Sbjct 721 GGGCACCGCCGGTTCCGTGAAAGCTACTGGGAAGTGCCCAGAAAAAACGGCAAATCGGTT 780 Query 911 ATCTCTGCCGGTG---TTGCCCT--GTATTGTT--TTGCCTGTGATAACGAGTTTGGCGC 963 | |||||||| ||| | | | || ||| | ||| ||| |||||| ||||| Sbjct 781 GT---TGCCGGTGGCGTTGGCATCAGCAT-GTTCGTCGCC---GATGGCGAGTTCGGCGC 833 Query 964 GGAAGTGTATTCCGGTGCCACGACAGAGAAACAGGCGTGGGAAGTCTTTCGCCCGGCGCG 1023 || ||||| | || || || || ||||||||||| ||||| || || || || || Sbjct 834 CGAGGTGTACGCAGGGGCGACCACTGAGAAACAGGCCTGGGAGGTTTTCCGGCCTGCCAA 893 Query 1024 ACTGATGTGTAAACGCACACCC-ATGCTGACGGAAGCGTTCGGGATTGAGGTTAACGCCT 1082 |||||| || | | | ||| ||||||| | || ||| || ||||| ||||||| Sbjct 894 GCTGATG-GTCAGCAAATCCCCGATGCTGATTCAGGCCGCCGGCATCGAGGTGAACGCCT 952 Query 1083 CAAACATGAACCGTCCGGAGGATGGCGCGCGGTTTGAACCGCTGATCGGTAACCCCGGTG 1142 | || |||||| ||| || | || || || || |||||||||||||| || | Sbjct 953 CGAATATGAACATCCCGTCCGACTTCAGTCGCTTCGAGCCACTGATCGGTAACCCTGGCG 1012 Query 1143 ATGGTTCATCACCCCACTGTGCCGTGGTGGATGAATATCACGAGCACGCCACCGATGCGC 1202 | || |||| || ||| ||| | || || || || ||||| ||| | || || | Sbjct 1013 ACGGCGCATCGCCGAGCTGCGCCATCGTCGACGAGTACCACGAACACCCAACGTCGGCAC 1072 Query 1203 TTTATACCACGATGCTTACCGGGATGGGCGCGCGACGTCAGCCACTGATGTGGGCCATCA 1262 || ||| ||||| || ||||||||||| || |||||||||||||||| ||||| Sbjct 1073 AGTACGACACCATGCTCACAGGGATGGGCGCCCGGCGTCAGCCACTGATGTTCATCATCA 1132 Query 1263 CCACCGCCGGGTACAACATTGAGGGGCCGTGCTACGACAAGCGGCGGGGAGGT-ATCGAG 1321 |||||||||| | ||||||| || |||||||||||||||| || | |||| ||||| Sbjct 1133 CCACCGCCGGCGCCGACATTGAAGGCCCGTGCTACGACAAGC-GCCGCCAGGTCGTCGAG 1191 Query 1322 ATGCTCAACGGTTCGGTACCCAACGATGAACTGTTCGGGATCATCTATACCGTTGACGAA 1381 |||||| |||| | || || | || || | ||||| |||| || ||||||| Sbjct 1192 ATGCTCGCCGGTACCGTGCCGGATGAAGAGTTATTCGGCTGGATCTGGACGCTTGACGAG 1251 Query 1382 GGCGATGACTGGACCGACCCGCAGGTGCTGGAAAAAGCCAATCCAAATATTGGCGTGTCG 1441 ||||| ||||||||||| ||| || |||||| || ||||| || || ||||| ||| Sbjct 1252 GGCGACGACTGGACCGATCCGAAGATGCTGGCCAAGGCCAACCCGAACCACGGCGTCTCG 1311 Query 1442 GTTTATCGCGAATTTTTGTTAAGTCAGCAGCAGCGTGCGAAAAATAACGCCCGTCTGGCA 1501 || | || || | | ||||||||| | || | || ||| | || Sbjct 1312 GTGTTTCAAGAGTACCTCGAGAGTCAGCAGGCCAGGGCCATCCGCTCTGCGCGTTTTGCC 1371 Query 1502 AACGTCTTTAAAACAAAACACCTCAATATCTGGGTG-TCGGCGCGTTCGGCGTATTTCAA 1560 ||| || ||||| || |||||||| |||||||| || | || |||| | || ||| Sbjct 1372 AACACATTCAAAACTAAGCACCTCAACCTCTGGGTGAGCGCCAAGTCCGGC-TTTTACAA 1430 Query 1561 CCTGGTGAGCTGGCAGAGCTGCGAGGATAAATCACTGACCCTTGAGCAGTTCGAGGGGCA 1620 | ||| |||||| | |||||| || | || |||||||| ||||||||||||||||| Sbjct 1431 CATGGAAAGCTGGAAAGCCTGCGAAGACACGTCGCTGACCCTGGAGCAGTTCGAGGGGCA 1490 Query 1621 GCCGTGCATTCTGGCCTTTGACCTGGCGCGTAAGCTGGATATGAACAGCATGGCGCGACT 1680 ||| || | ||| ||| ||||||| ||||| ||||||||| || || || | Sbjct 1491 AGAGTGGATAGCCGGCTTCGACTTGGCGCGCAAGCTCGATATGAAC-TCAAGG-GCCAGG 1548 Query 1681 TTATAC--CCGTGAGATTGACGGTAAAACGCATTACTACAGTGTGGCCCCGCGTTTCTGG 1738 || | | |||| |||||||| || | || |||||||| | || ||| |||||| Sbjct 1549 TTGTTCTGGCGTGTAATTGACGGGAAGAACCACTACTACAGCATTGCTCCGAAATTCTGG 1608 Query 1739 GTACCGTATGACACGGTGTACAGCGTCGAGAAAACTGAAGATCGCCGGACCGCCGAACGC 1798 || || |||||||| | | || | ||| || ||| || | || || || Sbjct 1609 GTCCCTTATGACACCGCCTTCAACACCGATAA----CAAG-----CGCATGGCTGAGCGT 1659 Query 1799 TTTCAGAAATGGGTGGA----AATGGGCGTCCTGACCGTTACCGATGGTGCAGAGGTGGA 1854 || ||| ||| | | || || | ||| || ||||| ||||| ||||| || Sbjct 1660 TTCCAGGCCTGGATTCACTCCAA---GCAT-CTGGATGTGACCGACGGTGCGGAGGTCGA 1715 Query 1855 TTATCGCTACATCCTCGAAGAGGCCAAAGCGGCGAACAA--AATCAGCCCGGTCAGCGAG 1912 || ||| | ||||| || || |||| | ||||||| | || | ||| || |||| Sbjct 1716 CTACCGCGAAATCCTTGAGGACACCAAGGAGGCGAACCACCAAGC--CCCTGTGCGCGAA 1773 Query 1913 TCACCCATCGACCCCTTCGGGGCGACCGGGCTCTCACATGACCTTGCTGATGAAGACCTG 1972 | || || ||||| || || || || || |||||||||| ||| | | | Sbjct 1774 TGCCCAATTGACCCTCATGGCGCAACAGGCCTGAGTCATGACCTTGATGACCAGGGTTTC 1833 Query 1973 AATCCCGTCACTATCGTCCAGAACTTCACCAATATGTCCGATCCGATGAAAGAGCTGGAA 2032 ||||| ||||| ||| ||||||| |||||| ||||| |||||||||||||||||||| Sbjct 1834 AATCCGGTCACCATCACGCAGAACTACACCAACATGTCGGATCCGATGAAAGAGCTGGAG 1893 Query 2033 GCAGCGATTGAATCGGGACGTTTTCATCATGACGGCAATCCCATCATGACCTGGTGTATC 2092 || ||||| || | || ||||| |||||||||||||| || |||||||||||||| || Sbjct 1894 GCCGCGATAGAGGCTGGCCGTTTCCATCATGACGGCAACCCGATCATGACCTGGTGCGTC 1953 Query 2093 GGCAACGTGGTCGGCAAAAACATGCCGGGTAACGATGATGTGGTGAAGCCTGTCAAGGAG 2152 ||||||||| ||||||| ||| |||| ||||||||||| | ||| || |||| || Sbjct 1954 GGCAACGTGATCGGCAAGAACTTGCCCGGTAACGATGACATCGTGCGCCCGATCAAACAG 2013 Query 2153 CAGGCG--GAAAACAAAATTGACGGTGCAGTTGCGCTGATTATGGCG 2197 |||| || ||||| || ||||| || || |||||||||||| || Sbjct 2014 --GGCGATGACAACAAGATCGACGGCGCTGTCGCGCTGATTATGACG 2058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118222195556282