Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_027339.1
Length=38389
Score E
Sequences producing significant alignments: (Bits) Value
seq3088379 563 2e-156
>seq3088379
Length=10556
Score = 563 bits (624), Expect = 2e-156
Identities = 1034/1487 (70%), Gaps = 55/1487 (4%)
Strand=Plus/Plus
Query 734 ATTCAGCTGTTGCCACACACCAAGGGGGAGTGGGCATTCAAGAGGATGCCCATCACACTG 793
|| ||||| | || ||||||||||| ||||||||||||||| | || ||||| ||
Sbjct 604 ATGCAGCTTCTACCGCACACCAAGGGCGAGTGGGCATTCAAGCGTCAGCTGATCACGCTC 663
Query 794 GAACCGTGGCAGCTCTTTGTGATCTGCTGTG-CGTTTGGCTGGGTCAATAA--AGGCTCC 850
|| || |||||||| |||| | || ||| | || |||||||| || || ||| |
Sbjct 664 GAGCCTTGGCAGCTTTTTGGCCTA-GCCGTGACATTCGGCTGGGTAAAGAAGAAGGG--C 720
Query 851 CGGCTGCGCCGCTTCAGGGAGGTGTATACCGAAATCCCCCGTAAGAACGGCAAATCGGCA 910
||| ||||| ||| | || || ||| | ||| | || |||||||||||||
Sbjct 721 GGGCACCGCCGGTTCCGTGAAAGCTACTGGGAAGTGCCCAGAAAAAACGGCAAATCGGTT 780
Query 911 ATCTCTGCCGGTG---TTGCCCT--GTATTGTT--TTGCCTGTGATAACGAGTTTGGCGC 963
| |||||||| ||| | | | || ||| | ||| ||| |||||| |||||
Sbjct 781 GT---TGCCGGTGGCGTTGGCATCAGCAT-GTTCGTCGCC---GATGGCGAGTTCGGCGC 833
Query 964 GGAAGTGTATTCCGGTGCCACGACAGAGAAACAGGCGTGGGAAGTCTTTCGCCCGGCGCG 1023
|| ||||| | || || || || ||||||||||| ||||| || || || || ||
Sbjct 834 CGAGGTGTACGCAGGGGCGACCACTGAGAAACAGGCCTGGGAGGTTTTCCGGCCTGCCAA 893
Query 1024 ACTGATGTGTAAACGCACACCC-ATGCTGACGGAAGCGTTCGGGATTGAGGTTAACGCCT 1082
|||||| || | | | ||| ||||||| | || ||| || ||||| |||||||
Sbjct 894 GCTGATG-GTCAGCAAATCCCCGATGCTGATTCAGGCCGCCGGCATCGAGGTGAACGCCT 952
Query 1083 CAAACATGAACCGTCCGGAGGATGGCGCGCGGTTTGAACCGCTGATCGGTAACCCCGGTG 1142
| || |||||| ||| || | || || || || |||||||||||||| || |
Sbjct 953 CGAATATGAACATCCCGTCCGACTTCAGTCGCTTCGAGCCACTGATCGGTAACCCTGGCG 1012
Query 1143 ATGGTTCATCACCCCACTGTGCCGTGGTGGATGAATATCACGAGCACGCCACCGATGCGC 1202
| || |||| || ||| ||| | || || || || ||||| ||| | || || |
Sbjct 1013 ACGGCGCATCGCCGAGCTGCGCCATCGTCGACGAGTACCACGAACACCCAACGTCGGCAC 1072
Query 1203 TTTATACCACGATGCTTACCGGGATGGGCGCGCGACGTCAGCCACTGATGTGGGCCATCA 1262
|| ||| ||||| || ||||||||||| || |||||||||||||||| |||||
Sbjct 1073 AGTACGACACCATGCTCACAGGGATGGGCGCCCGGCGTCAGCCACTGATGTTCATCATCA 1132
Query 1263 CCACCGCCGGGTACAACATTGAGGGGCCGTGCTACGACAAGCGGCGGGGAGGT-ATCGAG 1321
|||||||||| | ||||||| || |||||||||||||||| || | |||| |||||
Sbjct 1133 CCACCGCCGGCGCCGACATTGAAGGCCCGTGCTACGACAAGC-GCCGCCAGGTCGTCGAG 1191
Query 1322 ATGCTCAACGGTTCGGTACCCAACGATGAACTGTTCGGGATCATCTATACCGTTGACGAA 1381
|||||| |||| | || || | || || | ||||| |||| || |||||||
Sbjct 1192 ATGCTCGCCGGTACCGTGCCGGATGAAGAGTTATTCGGCTGGATCTGGACGCTTGACGAG 1251
Query 1382 GGCGATGACTGGACCGACCCGCAGGTGCTGGAAAAAGCCAATCCAAATATTGGCGTGTCG 1441
||||| ||||||||||| ||| || |||||| || ||||| || || ||||| |||
Sbjct 1252 GGCGACGACTGGACCGATCCGAAGATGCTGGCCAAGGCCAACCCGAACCACGGCGTCTCG 1311
Query 1442 GTTTATCGCGAATTTTTGTTAAGTCAGCAGCAGCGTGCGAAAAATAACGCCCGTCTGGCA 1501
|| | || || | | ||||||||| | || | || ||| | ||
Sbjct 1312 GTGTTTCAAGAGTACCTCGAGAGTCAGCAGGCCAGGGCCATCCGCTCTGCGCGTTTTGCC 1371
Query 1502 AACGTCTTTAAAACAAAACACCTCAATATCTGGGTG-TCGGCGCGTTCGGCGTATTTCAA 1560
||| || ||||| || |||||||| |||||||| || | || |||| | || |||
Sbjct 1372 AACACATTCAAAACTAAGCACCTCAACCTCTGGGTGAGCGCCAAGTCCGGC-TTTTACAA 1430
Query 1561 CCTGGTGAGCTGGCAGAGCTGCGAGGATAAATCACTGACCCTTGAGCAGTTCGAGGGGCA 1620
| ||| |||||| | |||||| || | || |||||||| |||||||||||||||||
Sbjct 1431 CATGGAAAGCTGGAAAGCCTGCGAAGACACGTCGCTGACCCTGGAGCAGTTCGAGGGGCA 1490
Query 1621 GCCGTGCATTCTGGCCTTTGACCTGGCGCGTAAGCTGGATATGAACAGCATGGCGCGACT 1680
||| || | ||| ||| ||||||| ||||| ||||||||| || || || |
Sbjct 1491 AGAGTGGATAGCCGGCTTCGACTTGGCGCGCAAGCTCGATATGAAC-TCAAGG-GCCAGG 1548
Query 1681 TTATAC--CCGTGAGATTGACGGTAAAACGCATTACTACAGTGTGGCCCCGCGTTTCTGG 1738
|| | | |||| |||||||| || | || |||||||| | || ||| ||||||
Sbjct 1549 TTGTTCTGGCGTGTAATTGACGGGAAGAACCACTACTACAGCATTGCTCCGAAATTCTGG 1608
Query 1739 GTACCGTATGACACGGTGTACAGCGTCGAGAAAACTGAAGATCGCCGGACCGCCGAACGC 1798
|| || |||||||| | | || | ||| || ||| || | || || ||
Sbjct 1609 GTCCCTTATGACACCGCCTTCAACACCGATAA----CAAG-----CGCATGGCTGAGCGT 1659
Query 1799 TTTCAGAAATGGGTGGA----AATGGGCGTCCTGACCGTTACCGATGGTGCAGAGGTGGA 1854
|| ||| ||| | | || || | ||| || ||||| ||||| ||||| ||
Sbjct 1660 TTCCAGGCCTGGATTCACTCCAA---GCAT-CTGGATGTGACCGACGGTGCGGAGGTCGA 1715
Query 1855 TTATCGCTACATCCTCGAAGAGGCCAAAGCGGCGAACAA--AATCAGCCCGGTCAGCGAG 1912
|| ||| | ||||| || || |||| | ||||||| | || | ||| || ||||
Sbjct 1716 CTACCGCGAAATCCTTGAGGACACCAAGGAGGCGAACCACCAAGC--CCCTGTGCGCGAA 1773
Query 1913 TCACCCATCGACCCCTTCGGGGCGACCGGGCTCTCACATGACCTTGCTGATGAAGACCTG 1972
| || || ||||| || || || || || |||||||||| ||| | | |
Sbjct 1774 TGCCCAATTGACCCTCATGGCGCAACAGGCCTGAGTCATGACCTTGATGACCAGGGTTTC 1833
Query 1973 AATCCCGTCACTATCGTCCAGAACTTCACCAATATGTCCGATCCGATGAAAGAGCTGGAA 2032
||||| ||||| ||| ||||||| |||||| ||||| ||||||||||||||||||||
Sbjct 1834 AATCCGGTCACCATCACGCAGAACTACACCAACATGTCGGATCCGATGAAAGAGCTGGAG 1893
Query 2033 GCAGCGATTGAATCGGGACGTTTTCATCATGACGGCAATCCCATCATGACCTGGTGTATC 2092
|| ||||| || | || ||||| |||||||||||||| || |||||||||||||| ||
Sbjct 1894 GCCGCGATAGAGGCTGGCCGTTTCCATCATGACGGCAACCCGATCATGACCTGGTGCGTC 1953
Query 2093 GGCAACGTGGTCGGCAAAAACATGCCGGGTAACGATGATGTGGTGAAGCCTGTCAAGGAG 2152
||||||||| ||||||| ||| |||| ||||||||||| | ||| || |||| ||
Sbjct 1954 GGCAACGTGATCGGCAAGAACTTGCCCGGTAACGATGACATCGTGCGCCCGATCAAACAG 2013
Query 2153 CAGGCG--GAAAACAAAATTGACGGTGCAGTTGCGCTGATTATGGCG 2197
|||| || ||||| || ||||| || || |||||||||||| ||
Sbjct 2014 --GGCGATGACAACAAGATCGACGGCGCTGTCGCGCTGATTATGACG 2058
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 118222195556282
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |